Wall clock time and date at job start Tue Mar 31 2020 11:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36660 * 120.12048 * 2 1 4 4 C 1.38785 * 120.53329 * 180.02562 * 3 2 1 5 5 C 1.37792 * 120.66184 * 359.97438 * 4 3 2 6 6 C 1.39088 * 119.77993 * 0.02562 * 5 4 3 7 7 N 1.37693 * 133.51218 * 179.97438 * 6 5 4 8 8 H 0.97000 * 125.06405 * 0.02562 * 7 6 5 9 9 C 1.36836 * 109.87032 * 180.02562 * 7 6 5 10 10 C 1.50700 * 125.02700 * 179.97438 * 9 7 6 11 11 N 1.46904 * 109.46909 * 83.44560 * 10 9 7 12 12 C 1.46898 * 111.00036 * 175.22958 * 11 10 9 13 13 C 1.50701 * 109.47367 * 178.68506 * 12 11 10 14 14 H 1.07997 * 119.99501 * 5.08595 * 13 12 11 15 15 C 1.37873 * 120.00276 * 185.08420 * 13 12 11 16 16 N 1.31516 * 119.99936 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00307 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47077 * 89.99930 * 17 15 13 19 19 H 1.48496 * 109.47370 * 209.99822 * 17 15 13 20 20 H 1.48501 * 109.46743 * 330.00025 * 17 15 13 21 21 C 1.46905 * 110.99607 * 51.28136 * 11 10 9 22 22 C 1.53003 * 109.47394 * 74.81066 * 21 11 10 23 23 C 1.53005 * 109.46979 * 80.52289 * 22 21 11 24 24 C 1.53001 * 109.47251 * 200.52832 * 22 21 11 25 25 C 1.53003 * 109.46653 * 320.52871 * 22 21 11 26 26 C 1.34232 * 109.93851 * 0.26478 * 9 7 6 27 27 C 1.39589 * 120.11815 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47215 * 90.00154 * 1 2 3 29 29 H 1.09004 * 109.46906 * 210.00464 * 1 2 3 30 30 H 1.08996 * 109.47096 * 329.99873 * 1 2 3 31 31 H 1.08005 * 119.73285 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.67088 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.10508 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47425 * 323.44900 * 10 9 7 35 35 H 1.08998 * 109.47011 * 203.44793 * 10 9 7 36 36 H 1.08996 * 109.47487 * 298.68862 * 12 11 10 37 37 H 1.09005 * 109.46789 * 58.68563 * 12 11 10 38 38 H 0.97007 * 120.00254 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46773 * 194.80666 * 21 11 10 40 40 H 1.08994 * 109.47301 * 314.80429 * 21 11 10 41 41 H 1.09002 * 109.46826 * 37.64065 * 23 22 21 42 42 H 1.09004 * 109.46458 * 157.63646 * 23 22 21 43 43 H 1.08994 * 109.47045 * 277.63686 * 23 22 21 44 44 H 1.08999 * 109.47255 * 59.99651 * 24 22 21 45 45 H 1.09000 * 109.47016 * 179.97438 * 24 22 21 46 46 H 1.08999 * 109.46551 * 299.99730 * 24 22 21 47 47 H 1.08995 * 109.47333 * 70.17221 * 25 22 21 48 48 H 1.09009 * 109.46440 * 190.17272 * 25 22 21 49 49 H 1.09000 * 109.47076 * 310.16540 * 25 22 21 50 50 H 1.07997 * 126.49939 * 179.71475 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5806 1.1921 -0.0005 5 6 4.2919 0.0119 -0.0005 6 6 3.6145 -1.2029 -0.0006 7 7 4.0249 -2.5172 -0.0010 8 1 4.9489 -2.8125 -0.0011 9 6 2.9351 -3.3448 -0.0013 10 6 2.9926 -4.8507 -0.0024 11 7 3.1696 -5.3349 1.3732 12 6 3.1169 -6.8020 1.4257 13 6 3.3340 -7.2620 2.8443 14 1 3.4129 -6.5371 3.6409 15 6 3.4317 -8.6083 3.1251 16 7 3.3360 -9.4911 2.1550 17 14 3.7001 -9.1786 4.8836 18 1 2.3857 -9.3902 5.5414 19 1 4.4626 -10.4528 4.8799 20 1 4.4653 -8.1459 5.6274 21 6 2.1726 -4.7398 2.2731 22 6 0.8124 -5.3986 2.0345 23 6 0.7581 -6.7380 2.7721 24 6 -0.2965 -4.4831 2.5571 25 6 0.6156 -5.6336 0.5355 26 6 1.8075 -2.6167 -0.0070 27 6 2.2075 -1.2074 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6504 2.1160 -0.0004 32 1 4.1085 2.1343 -0.0009 33 1 5.3717 0.0302 -0.0005 34 1 3.8313 -5.1819 -0.6149 35 1 2.0643 -5.2494 -0.4114 36 1 2.1418 -7.1433 1.0783 37 1 3.8960 -7.2167 0.7860 38 1 3.4044 -10.4383 2.3526 39 1 2.4765 -4.8983 3.3078 40 1 2.0978 -3.6704 2.0762 41 1 1.2733 -6.6472 3.7284 42 1 -0.2817 -7.0159 2.9445 43 1 1.2440 -7.5049 2.1690 44 1 -0.2577 -3.5289 2.0316 45 1 -1.2654 -4.9523 2.3867 46 1 -0.1561 -4.3157 3.6250 47 1 1.2897 -6.4216 0.1996 48 1 -0.4156 -5.9327 0.3470 49 1 0.8323 -4.7140 -0.0080 50 1 0.7969 -2.9976 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461893515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:02 Heat of formation + Delta-G solvation = 100.441635 kcal Electronic energy + Delta-G solvation = -27710.841637 eV Core-core repulsion = 24319.140628 eV Total energy + Delta-G solvation = -3391.701009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32163 -39.29784 -37.01906 -33.58484 -33.11899 -32.63862 -30.13380 -29.71331 -27.80453 -27.73531 -26.42151 -25.93192 -25.42063 -23.78070 -21.75266 -21.13526 -20.36715 -19.77186 -18.28608 -17.06452 -16.34786 -16.05739 -15.47800 -15.07074 -14.92178 -14.51870 -14.30508 -13.96985 -13.87050 -13.53031 -13.39281 -13.00743 -12.85075 -12.75755 -12.46291 -12.21330 -11.89340 -11.67848 -11.42846 -11.36735 -11.24464 -11.11449 -10.92065 -10.82615 -10.77815 -10.69542 -10.56503 -10.44625 -10.16660 -9.93644 -9.68160 -9.41957 -9.21775 -9.04992 -8.41675 -7.98761 -7.42009 -6.93428 -6.05073 -3.99831 1.23892 1.77258 2.91639 3.29408 3.34939 3.36905 3.40410 3.99748 4.41700 4.78701 4.94567 5.01867 5.11282 5.27336 5.30199 5.32477 5.42471 5.45605 5.53572 5.65002 5.65497 5.68392 5.70075 5.77310 5.93218 6.00717 6.05575 6.07904 6.16034 6.21526 6.23464 6.24761 6.33226 6.43359 6.52073 6.57472 6.61191 6.75331 6.83465 6.88523 6.93734 6.99128 7.06003 7.12792 7.30393 7.36852 7.38037 7.74996 7.78376 7.80252 8.07052 8.20559 8.52182 9.00210 9.58207 11.05689 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003772 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.709509 B = 7421.772503 C = 7983.950756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.042 4.042 3 C -0.155 4.155 4 C -0.105 4.105 5 C -0.135 4.135 6 C 0.096 3.904 7 N -0.583 5.583 8 H 0.415 0.585 9 C 0.121 3.879 10 C 0.056 3.944 11 N -0.527 5.527 12 C 0.168 3.832 13 C -0.490 4.490 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.070 3.930 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.177 4.177 26 C -0.215 4.215 27 C -0.100 4.100 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.041 0.959 49 H 0.066 0.934 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 16.381 -5.755 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.042 4.042 3 C -0.175 4.175 4 C -0.124 4.124 5 C -0.155 4.155 6 C -0.011 4.011 7 N -0.184 5.184 8 H 0.252 0.748 9 C 0.011 3.989 10 C -0.071 4.071 11 N -0.250 5.250 12 C 0.044 3.956 13 C -0.529 4.529 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.058 4.058 22 C -0.091 4.091 23 C -0.198 4.198 24 C -0.193 4.193 25 C -0.232 4.232 26 C -0.240 4.240 27 C -0.105 4.105 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.120 0.880 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.478 16.229 -5.622 17.524 hybrid contribution -0.023 -0.802 0.830 1.155 sum -3.501 15.427 -4.792 16.529 Atomic orbital electron populations 1.20729 0.91571 1.02528 1.01987 1.19032 0.95428 0.91266 0.98496 1.20414 0.94048 0.96979 1.06026 1.20662 0.94004 0.96709 1.01069 1.19974 0.98935 0.89697 1.06927 1.18221 0.93874 0.84996 1.04051 1.41842 1.08749 1.03626 1.64230 0.74789 1.20471 0.85795 0.92896 0.99704 1.21953 1.04068 0.86422 0.94690 1.62526 1.47791 1.11443 1.03278 1.20445 0.97106 0.80007 0.98060 1.21029 1.47763 0.91295 0.92815 0.92074 1.24849 0.96014 0.96743 0.96829 1.69931 1.51113 1.01467 1.31314 0.86650 0.78225 0.78177 0.85372 1.20722 1.21385 1.19963 1.22262 0.88343 0.97061 0.98159 1.21084 0.96099 0.97064 0.94806 1.22537 0.98142 0.96869 1.02289 1.21869 0.97987 0.98864 1.00574 1.23006 1.01280 1.02107 0.96855 1.21453 0.97601 0.90110 1.14806 1.19032 0.91838 0.93229 1.06413 0.91443 0.91449 0.91911 0.86604 0.86272 0.86688 0.91196 0.88237 0.95575 0.95481 0.92998 0.90968 0.92070 0.92071 0.96636 0.87966 0.93456 0.93608 0.93226 0.89954 0.93951 0.91527 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.95 36.01 0.36 -0.80 16 2 C -0.04 -0.54 5.87 -104.69 -0.61 -1.15 16 3 C -0.16 -1.81 9.62 -39.95 -0.38 -2.20 16 4 C -0.11 -1.20 10.01 -39.54 -0.40 -1.59 16 5 C -0.13 -1.68 10.08 -39.43 -0.40 -2.08 16 6 C 0.10 1.39 7.28 -83.99 -0.61 0.78 16 7 N -0.58 -8.34 6.07 -6.95 -0.04 -8.38 16 8 H 0.42 5.23 8.96 -40.82 -0.37 4.86 16 9 C 0.12 1.85 5.27 -81.77 -0.43 1.42 16 10 C 0.06 0.93 5.01 -4.97 -0.02 0.91 16 11 N -0.53 -10.35 4.88 -237.51 -1.16 -11.51 16 12 C 0.17 3.90 3.92 -4.98 -0.02 3.88 16 13 C -0.49 -12.50 5.26 -34.44 -0.18 -12.68 16 14 H 0.06 1.59 6.14 -52.49 -0.32 1.27 16 15 C 0.06 1.49 5.17 -17.82 -0.09 1.40 16 16 N -0.90 -24.98 13.29 55.43 0.74 -24.24 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C 0.07 1.31 4.48 -3.82 -0.02 1.29 16 22 C -0.09 -1.55 0.77 -154.50 -0.12 -1.66 16 23 C -0.14 -2.88 6.98 37.16 0.26 -2.62 16 24 C -0.14 -2.03 8.25 37.16 0.31 -1.73 16 25 C -0.18 -2.87 6.39 37.16 0.24 -2.63 16 26 C -0.21 -3.19 8.45 -37.67 -0.32 -3.51 16 27 C -0.10 -1.48 6.14 -105.14 -0.65 -2.13 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 30 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.60 3.17 -55.23 -0.18 1.43 16 36 H 0.03 0.63 2.65 -51.93 -0.14 0.50 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.07 1.51 6.16 -51.93 -0.32 1.19 16 40 H 0.06 1.10 5.19 -51.93 -0.27 0.83 16 41 H 0.06 1.33 6.26 -51.93 -0.33 1.00 16 42 H 0.01 0.28 7.93 -51.93 -0.41 -0.13 16 43 H 0.10 2.39 4.11 -51.93 -0.21 2.17 16 44 H 0.05 0.66 7.98 -51.93 -0.41 0.24 16 45 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.50 3.90 -51.93 -0.20 1.30 16 48 H 0.04 0.64 8.11 -51.92 -0.42 0.22 16 49 H 0.07 0.98 3.03 -51.93 -0.16 0.82 16 50 H 0.15 2.03 6.19 -52.49 -0.32 1.70 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -27.71 362.94 -10.51 -38.22 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.41 Total: 9.64 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.09 Total: -25.10 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.46 Total: -44.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.71 -10.51 -38.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461893515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.666 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds