Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36660 * 120.12048 * 2 1 4 4 C 1.38785 * 120.53329 * 180.02562 * 3 2 1 5 5 C 1.37792 * 120.66184 * 359.97438 * 4 3 2 6 6 C 1.39088 * 119.77993 * 0.02562 * 5 4 3 7 7 N 1.37693 * 133.51218 * 179.97438 * 6 5 4 8 8 H 0.97000 * 125.06405 * 0.02562 * 7 6 5 9 9 C 1.36836 * 109.87032 * 180.02562 * 7 6 5 10 10 C 1.50700 * 125.02700 * 179.97438 * 9 7 6 11 11 N 1.46904 * 109.46909 * 83.44560 * 10 9 7 12 12 C 1.46898 * 111.00036 * 175.22958 * 11 10 9 13 13 C 1.50701 * 109.47367 * 178.68506 * 12 11 10 14 14 H 1.07997 * 119.99501 * 5.08595 * 13 12 11 15 15 C 1.37873 * 120.00276 * 185.08420 * 13 12 11 16 16 N 1.31516 * 119.99936 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00307 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47077 * 89.99930 * 17 15 13 19 19 H 1.48496 * 109.47370 * 209.99822 * 17 15 13 20 20 H 1.48501 * 109.46743 * 330.00025 * 17 15 13 21 21 C 1.46905 * 110.99607 * 51.28136 * 11 10 9 22 22 C 1.53003 * 109.47394 * 74.81066 * 21 11 10 23 23 C 1.53005 * 109.46979 * 80.52289 * 22 21 11 24 24 C 1.53001 * 109.47251 * 200.52832 * 22 21 11 25 25 C 1.53003 * 109.46653 * 320.52871 * 22 21 11 26 26 C 1.34232 * 109.93851 * 0.26478 * 9 7 6 27 27 C 1.39589 * 120.11815 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47215 * 90.00154 * 1 2 3 29 29 H 1.09004 * 109.46906 * 210.00464 * 1 2 3 30 30 H 1.08996 * 109.47096 * 329.99873 * 1 2 3 31 31 H 1.08005 * 119.73285 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.67088 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.10508 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47425 * 323.44900 * 10 9 7 35 35 H 1.08998 * 109.47011 * 203.44793 * 10 9 7 36 36 H 1.08996 * 109.47487 * 298.68862 * 12 11 10 37 37 H 1.09005 * 109.46789 * 58.68563 * 12 11 10 38 38 H 0.97007 * 120.00254 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46773 * 194.80666 * 21 11 10 40 40 H 1.08994 * 109.47301 * 314.80429 * 21 11 10 41 41 H 1.09002 * 109.46826 * 37.64065 * 23 22 21 42 42 H 1.09004 * 109.46458 * 157.63646 * 23 22 21 43 43 H 1.08994 * 109.47045 * 277.63686 * 23 22 21 44 44 H 1.08999 * 109.47255 * 59.99651 * 24 22 21 45 45 H 1.09000 * 109.47016 * 179.97438 * 24 22 21 46 46 H 1.08999 * 109.46551 * 299.99730 * 24 22 21 47 47 H 1.08995 * 109.47333 * 70.17221 * 25 22 21 48 48 H 1.09009 * 109.46440 * 190.17272 * 25 22 21 49 49 H 1.09000 * 109.47076 * 310.16540 * 25 22 21 50 50 H 1.07997 * 126.49939 * 179.71475 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5806 1.1921 -0.0005 5 6 4.2919 0.0119 -0.0005 6 6 3.6145 -1.2029 -0.0006 7 7 4.0249 -2.5172 -0.0010 8 1 4.9489 -2.8125 -0.0011 9 6 2.9351 -3.3448 -0.0013 10 6 2.9926 -4.8507 -0.0024 11 7 3.1696 -5.3349 1.3732 12 6 3.1169 -6.8020 1.4257 13 6 3.3340 -7.2620 2.8443 14 1 3.4129 -6.5371 3.6409 15 6 3.4317 -8.6083 3.1251 16 7 3.3360 -9.4911 2.1550 17 14 3.7001 -9.1786 4.8836 18 1 2.3857 -9.3902 5.5414 19 1 4.4626 -10.4528 4.8799 20 1 4.4653 -8.1459 5.6274 21 6 2.1726 -4.7398 2.2731 22 6 0.8124 -5.3986 2.0345 23 6 0.7581 -6.7380 2.7721 24 6 -0.2965 -4.4831 2.5571 25 6 0.6156 -5.6336 0.5355 26 6 1.8075 -2.6167 -0.0070 27 6 2.2075 -1.2074 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6504 2.1160 -0.0004 32 1 4.1085 2.1343 -0.0009 33 1 5.3717 0.0302 -0.0005 34 1 3.8313 -5.1819 -0.6149 35 1 2.0643 -5.2494 -0.4114 36 1 2.1418 -7.1433 1.0783 37 1 3.8960 -7.2167 0.7860 38 1 3.4044 -10.4383 2.3526 39 1 2.4765 -4.8983 3.3078 40 1 2.0978 -3.6704 2.0762 41 1 1.2733 -6.6472 3.7284 42 1 -0.2817 -7.0159 2.9445 43 1 1.2440 -7.5049 2.1690 44 1 -0.2577 -3.5289 2.0316 45 1 -1.2654 -4.9523 2.3867 46 1 -0.1561 -4.3157 3.6250 47 1 1.2897 -6.4216 0.1996 48 1 -0.4156 -5.9327 0.3470 49 1 0.8323 -4.7140 -0.0080 50 1 0.7969 -2.9976 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461893515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = 85.920802 kcal Electronic energy + Delta-G solvation = -27711.471308 eV Core-core repulsion = 24319.140628 eV Total energy + Delta-G solvation = -3392.330679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43383 -40.72324 -38.02285 -35.16245 -34.70736 -33.82915 -31.49421 -30.79312 -29.35711 -29.03261 -27.49714 -27.34219 -26.85582 -25.43377 -22.73810 -22.56951 -21.55165 -20.98723 -19.76534 -18.38230 -17.99700 -17.14977 -16.99261 -16.52184 -16.20702 -16.12529 -15.43330 -15.22285 -15.11111 -14.84829 -14.48919 -14.26657 -14.08208 -13.91301 -13.82570 -13.36246 -13.16767 -13.01514 -12.94639 -12.81610 -12.60809 -12.54892 -12.34963 -12.29356 -12.17391 -12.05852 -11.95065 -11.82153 -11.66368 -11.56144 -11.29330 -10.96915 -10.84915 -10.46753 -10.34541 -9.02241 -8.58192 -8.39721 -8.10128 -6.09364 0.25908 0.80946 1.39326 1.41929 1.49996 1.78739 2.29274 2.44858 3.03964 3.23325 3.53154 3.80282 3.91748 4.04895 4.10563 4.20396 4.23772 4.27194 4.43787 4.48299 4.55294 4.60115 4.72243 4.77044 4.78705 4.82944 4.86381 4.93181 4.97352 5.00956 5.04718 5.11233 5.13191 5.18507 5.22389 5.26520 5.29348 5.39103 5.46378 5.48739 5.54732 5.65281 5.71611 5.75682 5.81402 5.95509 5.98609 6.05117 6.19300 6.35841 6.47707 6.70784 6.76160 6.97834 7.51671 9.00022 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003772 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.709509 B = 7421.772503 C = 7983.950756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.159 4.159 4 C -0.100 4.100 5 C -0.149 4.149 6 C 0.080 3.920 7 N -0.585 5.585 8 H 0.419 0.581 9 C 0.103 3.897 10 C 0.062 3.938 11 N -0.537 5.537 12 C 0.182 3.818 13 C -0.486 4.486 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.929 5.929 17 Si 0.940 3.060 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.079 3.921 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.170 4.170 26 C -0.209 4.209 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.029 0.971 37 H -0.007 1.007 38 H 0.259 0.741 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.028 0.972 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 19.196 -5.763 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.178 4.178 4 C -0.119 4.119 5 C -0.170 4.170 6 C -0.027 4.027 7 N -0.187 5.187 8 H 0.256 0.744 9 C -0.006 4.006 10 C -0.065 4.065 11 N -0.260 5.260 12 C 0.057 3.943 13 C -0.525 4.525 14 H 0.070 0.930 15 C -0.184 4.184 16 N -0.571 5.571 17 Si 0.767 3.233 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.049 4.049 22 C -0.087 4.087 23 C -0.191 4.191 24 C -0.187 4.187 25 C -0.225 4.225 26 C -0.235 4.235 27 C -0.132 4.132 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.046 0.954 37 H 0.011 0.989 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.102 0.898 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.701 19.063 -5.626 20.424 hybrid contribution 0.374 -1.523 0.798 1.760 sum -4.327 17.540 -4.828 18.699 Atomic orbital electron populations 1.20768 0.89940 1.03186 1.02780 1.19403 0.96856 0.91026 0.98061 1.20810 0.94434 0.97669 1.04867 1.21100 0.94268 0.97489 0.99037 1.20296 1.00034 0.89442 1.07214 1.18573 0.94324 0.85333 1.04493 1.41831 1.08761 1.03783 1.64338 0.74370 1.20205 0.86597 0.91983 1.01838 1.21859 1.04294 0.87695 0.92632 1.62329 1.48895 1.09270 1.05515 1.20145 0.95854 0.82261 0.96055 1.21195 1.46501 0.91123 0.93652 0.93013 1.25454 0.96202 0.97003 0.99785 1.70032 1.52606 1.01540 1.32896 0.85824 0.78185 0.77555 0.81782 1.20157 1.21352 1.19832 1.22143 0.88790 0.97645 0.96346 1.21017 0.96355 0.95895 0.95423 1.22357 0.98138 0.97688 1.00877 1.21799 0.97312 0.98975 1.00582 1.22888 1.01583 1.02136 0.95930 1.21565 0.97595 0.90495 1.13839 1.19293 0.92302 0.93708 1.07872 0.90508 0.91927 0.90136 0.83963 0.83331 0.85118 0.91593 0.87533 0.95417 0.98904 0.93154 0.93651 0.90886 0.94178 0.95334 0.91206 0.91839 0.92308 0.93326 0.92328 0.92446 0.89769 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.95 71.24 0.71 -1.25 16 2 C -0.05 -1.23 5.87 -19.91 -0.12 -1.35 16 3 C -0.16 -3.17 9.62 22.03 0.21 -2.96 16 4 C -0.10 -1.96 10.01 22.30 0.22 -1.73 16 5 C -0.15 -3.43 10.08 22.37 0.23 -3.21 16 6 C 0.08 2.23 7.28 39.03 0.28 2.51 16 7 N -0.58 -16.56 6.07 -175.91 -1.07 -17.62 16 8 H 0.42 10.64 8.96 -92.71 -0.83 9.81 16 9 C 0.10 3.11 5.27 40.86 0.22 3.33 16 10 C 0.06 2.09 5.01 85.56 0.43 2.52 16 11 N -0.54 -21.64 4.88 -905.35 -4.42 -26.05 16 12 C 0.18 8.80 3.92 85.56 0.34 9.14 16 13 C -0.49 -25.61 5.26 25.60 0.13 -25.48 16 14 H 0.05 2.79 6.14 -2.91 -0.02 2.77 16 15 C 0.01 0.71 5.17 84.65 0.44 1.15 16 16 N -0.93 -53.23 13.29 21.45 0.28 -52.95 16 17 Si 0.94 43.71 29.54 68.60 2.03 45.73 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 21 C 0.08 2.96 4.48 86.30 0.39 3.35 16 22 C -0.09 -2.91 0.77 -52.18 -0.04 -2.95 16 23 C -0.13 -5.48 6.98 71.98 0.50 -4.98 16 24 C -0.13 -3.59 8.25 71.98 0.59 -3.00 16 25 C -0.17 -5.34 6.39 71.98 0.46 -4.88 16 26 C -0.21 -5.95 8.45 23.51 0.20 -5.75 16 27 C -0.13 -3.55 6.14 -20.20 -0.12 -3.67 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.17 7.91 -2.39 -0.02 1.15 16 30 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 3.43 3.17 -5.49 -0.02 3.41 16 36 H 0.03 1.39 2.65 -2.39 -0.01 1.39 16 37 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 39 H 0.05 1.93 6.16 -2.38 -0.01 1.92 16 40 H 0.07 2.58 5.19 -2.39 -0.01 2.57 16 41 H 0.04 1.77 6.26 -2.39 -0.01 1.75 16 42 H 0.03 1.05 7.93 -2.38 -0.02 1.03 16 43 H 0.07 3.35 4.11 -2.39 -0.01 3.34 16 44 H 0.06 1.58 7.98 -2.39 -0.02 1.56 16 45 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 46 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 2.16 3.90 -2.39 -0.01 2.15 16 48 H 0.06 1.63 8.11 -2.38 -0.02 1.61 16 49 H 0.08 2.36 3.03 -2.39 -0.01 2.35 16 50 H 0.15 3.94 6.19 -2.91 -0.02 3.92 16 Total: -1.00 -60.79 362.94 2.02 -58.76 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.13 Total: 31.34 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 5.07 Total: -39.22 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -5.20 Total: -96.62 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -60.79 2.02 -58.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461893515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.685 kcal (2) G-P(sol) polarization free energy of solvation -60.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds