Wall clock time and date at job start Tue Mar 31 2020 11:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.93758 * 2 1 4 4 C 1.54130 * 113.65103 * 228.63647 * 2 1 3 5 5 H 1.08998 * 112.99339 * 106.05806 * 4 2 1 6 6 N 1.43845 * 112.22863 * 339.27313 * 4 2 1 7 7 C 1.46341 * 112.99069 * 221.42269 * 6 4 2 8 8 C 1.53148 * 108.98232 * 58.89068 * 7 6 4 9 9 C 1.52727 * 108.68199 * 292.74123 * 8 7 6 10 10 C 1.51663 * 111.06868 * 54.59748 * 9 8 7 11 11 H 1.08995 * 111.88349 * 193.49392 * 10 9 8 12 12 C 1.53506 * 114.25050 * 64.48127 * 10 9 8 13 13 H 1.08999 * 113.69912 * 101.82088 * 12 10 9 14 14 N 1.46902 * 113.69555 * 330.66431 * 12 10 9 15 15 C 1.46904 * 111.00406 * 104.79512 * 14 12 10 16 16 C 1.50695 * 109.47492 * 179.97438 * 15 14 12 17 17 C 1.38634 * 119.74877 * 269.72547 * 16 15 14 18 18 C 1.37617 * 120.24736 * 179.76051 * 17 16 15 19 19 C 1.40724 * 119.74512 * 0.49002 * 18 17 16 20 20 C 1.41394 * 120.24347 * 179.78911 * 19 18 17 21 21 H 1.07995 * 120.00462 * 26.52015 * 20 19 18 22 22 C 1.39954 * 119.99417 * 206.52057 * 20 19 18 23 23 N 1.30818 * 120.00303 * 12.88815 * 22 20 19 24 24 Si 1.86798 * 119.99565 * 192.88417 * 22 20 19 25 25 H 1.48495 * 109.47165 * 90.00419 * 24 22 20 26 26 H 1.48501 * 109.46902 * 210.00317 * 24 22 20 27 27 H 1.48500 * 109.47385 * 330.00011 * 24 22 20 28 28 C 1.40716 * 119.50903 * 359.76058 * 19 18 17 29 29 C 1.37618 * 119.74586 * 0.02562 * 28 19 18 30 30 H 1.08995 * 109.46812 * 299.31717 * 1 2 3 31 31 H 1.08992 * 109.47045 * 59.31940 * 1 2 3 32 32 H 1.08998 * 109.46512 * 179.31537 * 1 2 3 33 33 H 1.09005 * 109.46818 * 171.85917 * 3 2 1 34 34 H 1.08999 * 109.47298 * 291.86300 * 3 2 1 35 35 H 1.08999 * 109.46987 * 51.86312 * 3 2 1 36 36 H 1.00900 * 110.99962 * 346.86907 * 6 4 2 37 37 H 1.09000 * 109.55480 * 299.04078 * 7 6 4 38 38 H 1.08998 * 109.63667 * 178.78989 * 7 6 4 39 39 H 1.09005 * 109.59901 * 172.98355 * 8 7 6 40 40 H 1.08994 * 109.73712 * 52.58348 * 8 7 6 41 41 H 1.09004 * 109.15850 * 294.18301 * 9 8 7 42 42 H 1.08999 * 109.15746 * 175.00709 * 9 8 7 43 43 H 1.00904 * 110.99760 * 228.74789 * 14 12 10 44 44 H 1.09004 * 109.46700 * 300.00447 * 15 14 12 45 45 H 1.09004 * 109.47013 * 59.99509 * 15 14 12 46 46 H 1.07997 * 119.87298 * 0.02562 * 17 16 15 47 47 H 1.07997 * 120.13322 * 180.22953 * 18 17 16 48 48 H 0.96991 * 120.00359 * 179.97438 * 23 22 20 49 49 H 1.07996 * 120.12721 * 179.97438 * 28 19 18 50 50 H 1.07997 * 119.87455 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4090 0.0000 4 6 2.1483 -0.9330 -1.0596 5 1 2.5734 -0.3935 -1.9060 6 7 1.2259 -1.9462 -1.4973 7 6 1.8508 -3.2607 -1.6500 8 6 2.4513 -3.6858 -0.3068 9 6 3.6184 -2.7576 0.0231 10 6 3.1854 -1.3045 -0.0098 11 1 4.0387 -0.6263 -0.0118 12 6 2.1474 -0.9315 1.0578 13 1 2.5690 -0.4042 1.9135 14 7 1.2726 -2.0462 1.4455 15 6 1.6490 -2.5775 2.7624 16 6 0.7313 -3.7162 3.1257 17 6 -0.4383 -3.4610 3.8248 18 6 -1.2861 -4.4926 4.1576 19 6 -0.9569 -5.8117 3.7945 20 6 -1.8182 -6.8801 4.1350 21 1 -2.8744 -6.7001 4.2710 22 6 -1.3020 -8.1710 4.2957 23 7 -0.0093 -8.3525 4.3823 24 14 -2.4588 -9.6348 4.3867 25 1 -2.6925 -10.1668 3.0202 26 1 -1.8519 -10.6934 5.2330 27 1 -3.7517 -9.2079 4.9795 28 6 0.2354 -6.0595 3.0896 29 6 1.0661 -5.0119 2.7635 30 1 -0.3633 0.5032 0.8960 31 1 -0.3633 0.5243 -0.8838 32 1 -0.3632 -1.0276 -0.0123 33 1 3.2048 1.3471 0.1455 34 1 1.9155 1.8928 -0.9537 35 1 1.6835 1.9909 0.8083 36 1 0.4254 -1.9953 -0.8850 37 1 2.6392 -3.2048 -2.4006 38 1 1.1016 -3.9885 -1.9613 39 1 2.8091 -4.7132 -0.3751 40 1 1.6944 -3.6134 0.4742 41 1 4.4141 -2.9105 -0.7060 42 1 3.9951 -2.9962 1.0177 43 1 0.3032 -1.7666 1.4320 44 1 2.6779 -2.9358 2.7290 45 1 1.5630 -1.7892 3.5103 46 1 -0.6870 -2.4483 4.1056 47 1 -2.1986 -4.2912 4.6991 48 1 0.3484 -9.2470 4.4940 49 1 0.4981 -7.0680 2.8063 50 1 1.9820 -5.1997 2.2228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576391135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:22 Heat of formation + Delta-G solvation = 44.353165 kcal Electronic energy + Delta-G solvation = -27459.938373 eV Core-core repulsion = 24065.805185 eV Total energy + Delta-G solvation = -3394.133187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43880 -37.71660 -35.36626 -34.73404 -33.29774 -32.08651 -30.03551 -29.72399 -29.24915 -27.57172 -26.53010 -24.77685 -23.40023 -22.99753 -21.78007 -20.96701 -19.92684 -19.34370 -18.13277 -17.30827 -16.08596 -15.92759 -15.62944 -15.33385 -14.54038 -14.23802 -14.05782 -13.81641 -13.70958 -13.52176 -13.14773 -13.03855 -12.69233 -12.51551 -12.38933 -12.26881 -12.21758 -11.96891 -11.85236 -11.54711 -11.30418 -11.12122 -11.11246 -10.96284 -10.80137 -10.59962 -10.42237 -10.37582 -10.11537 -10.08731 -9.88582 -9.58099 -9.34980 -9.19866 -8.06201 -7.76416 -7.45970 -7.28752 -6.73471 -4.38210 2.71974 3.05047 3.07021 3.09902 3.15922 3.92631 4.18888 4.33538 4.47522 4.63790 4.76464 4.84142 4.99358 5.08973 5.28152 5.44654 5.53395 5.54238 5.55993 5.58399 5.68073 5.74144 5.76478 5.78571 5.83241 5.90295 5.94268 6.02441 6.03960 6.08880 6.19299 6.22820 6.30338 6.32145 6.42348 6.45747 6.51924 6.58171 6.94212 7.06590 7.21901 7.27395 7.32174 7.35622 7.49336 7.58503 7.62399 7.74240 7.85845 8.05067 8.12110 8.29283 8.64158 8.88987 8.96248 10.19871 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.003331 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.850275 B = 8402.845407 C = 8807.086609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.123 4.123 4 C 0.102 3.898 5 H 0.070 0.930 6 N -0.671 5.671 7 C 0.069 3.931 8 C -0.180 4.180 9 C -0.086 4.086 10 C -0.124 4.124 11 H 0.081 0.919 12 C 0.067 3.933 13 H 0.053 0.947 14 N -0.659 5.659 15 C 0.124 3.876 16 C -0.212 4.212 17 C -0.087 4.087 18 C -0.225 4.225 19 C 0.112 3.888 20 C -0.463 4.463 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.798 5.798 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.163 4.163 29 C -0.080 4.080 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.349 0.651 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.134 0.866 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.341 0.659 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.280 0.720 49 H 0.120 0.880 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 12.658 -8.172 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.181 4.181 4 C -0.009 4.009 5 H 0.088 0.912 6 N -0.305 5.305 7 C -0.060 4.060 8 C -0.219 4.219 9 C -0.124 4.124 10 C -0.145 4.145 11 H 0.099 0.901 12 C -0.043 4.043 13 H 0.071 0.929 14 N -0.292 5.292 15 C -0.003 4.003 16 C -0.214 4.214 17 C -0.106 4.106 18 C -0.245 4.245 19 C 0.110 3.890 20 C -0.493 4.493 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.424 5.424 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.182 4.182 29 C -0.099 4.099 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.152 0.848 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.163 0.837 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.137 0.863 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.452 12.154 -9.111 16.139 hybrid contribution -0.428 -0.288 1.698 1.775 sum 5.024 11.865 -7.413 14.866 Atomic orbital electron populations 1.21699 0.94174 1.02283 1.01891 1.22458 0.95682 0.94904 0.97324 1.21510 1.00443 0.94268 1.01861 1.21611 0.92723 0.92783 0.93826 0.91175 1.59613 1.09923 1.06394 1.54550 1.21717 0.98103 0.89614 0.96554 1.22747 1.01024 0.97086 1.01053 1.20740 0.97610 0.93732 1.00329 1.22423 0.96853 0.97680 0.97565 0.90104 1.22809 0.95123 0.90987 0.95386 0.92934 1.60799 1.06854 1.31375 1.30154 1.20632 0.98229 0.94482 0.86979 1.18880 0.98593 0.93252 1.10681 1.20350 0.94684 0.96524 0.98998 1.20953 1.01188 0.93704 1.08608 1.17638 0.91981 0.91509 0.87876 1.19615 0.95837 0.91946 1.41852 0.90588 1.25896 0.95413 1.00494 0.92484 1.69794 1.12853 1.24147 1.35568 0.86290 0.80999 0.80204 0.79082 1.19297 1.20337 1.18691 1.21390 0.96880 0.98172 1.01764 1.20511 0.98011 0.92407 0.98971 0.92641 0.91846 0.91144 0.92441 0.92127 0.92501 0.82688 0.92592 0.91432 0.93514 0.84838 0.94012 0.92807 0.83745 0.91828 0.96261 0.90016 0.89218 0.90954 0.86260 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.79 37.16 0.29 -1.19 16 2 C -0.10 -1.08 1.34 -153.47 -0.21 -1.29 16 3 C -0.12 -1.09 9.07 37.16 0.34 -0.75 16 4 C 0.10 1.21 3.96 -69.17 -0.27 0.93 16 5 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 6 N -0.67 -8.67 6.31 -108.95 -0.69 -9.36 16 7 C 0.07 0.93 6.55 -4.05 -0.03 0.91 16 8 C -0.18 -2.62 5.70 -26.79 -0.15 -2.77 16 9 C -0.09 -1.15 5.44 -27.55 -0.15 -1.30 16 10 C -0.12 -1.49 3.63 -91.47 -0.33 -1.82 16 11 H 0.08 0.89 7.46 -51.93 -0.39 0.50 16 12 C 0.07 0.82 3.54 -66.99 -0.24 0.58 16 13 H 0.05 0.66 7.86 -51.93 -0.41 0.25 16 14 N -0.66 -9.17 1.88 -107.23 -0.20 -9.37 16 15 C 0.12 2.03 5.19 -4.98 -0.03 2.01 16 16 C -0.21 -4.30 5.31 -104.33 -0.55 -4.85 16 17 C -0.09 -1.84 9.67 -39.66 -0.38 -2.22 16 18 C -0.22 -5.37 9.80 -38.87 -0.38 -5.75 16 19 C 0.11 2.93 5.57 -106.82 -0.59 2.34 16 20 C -0.46 -12.15 9.07 -37.74 -0.34 -12.49 16 21 H 0.08 1.93 7.88 -52.49 -0.41 1.51 16 22 C 0.07 1.85 5.23 -17.34 -0.09 1.76 16 23 N -0.80 -20.49 10.81 55.55 0.60 -19.89 16 24 Si 0.91 18.63 29.58 -169.99 -5.03 13.60 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 28 C -0.16 -4.12 8.68 -38.87 -0.34 -4.45 16 29 C -0.08 -1.78 9.07 -39.66 -0.36 -2.14 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.80 4.25 -51.93 -0.22 0.58 16 33 H 0.06 0.49 7.21 -51.93 -0.37 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.35 4.62 4.69 -39.29 -0.18 4.44 16 37 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.13 2.18 3.92 -51.93 -0.20 1.97 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.77 7.24 -51.93 -0.38 0.39 16 43 H 0.34 4.80 6.07 -39.29 -0.24 4.57 16 44 H 0.06 1.06 7.16 -51.93 -0.37 0.69 16 45 H 0.02 0.31 8.07 -51.93 -0.42 -0.11 16 46 H 0.08 1.54 8.06 -52.49 -0.42 1.11 16 47 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 48 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 49 H 0.12 3.17 6.13 -52.49 -0.32 2.85 16 50 H 0.09 1.82 8.00 -52.49 -0.42 1.40 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -25.23 368.05 -11.71 -36.94 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -8.12 Total: 15.04 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -3.82 Total: -32.52 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.29 Total: -38.62 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -25.23 -11.71 -36.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576391135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.298 kcal (2) G-P(sol) polarization free energy of solvation -25.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds