Wall clock time and date at job start Tue Mar 31 2020 11:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.93758 * 2 1 4 4 C 1.54130 * 113.65103 * 228.63647 * 2 1 3 5 5 H 1.08998 * 112.99339 * 106.05806 * 4 2 1 6 6 N 1.43845 * 112.22863 * 339.27313 * 4 2 1 7 7 C 1.46341 * 112.99069 * 221.42269 * 6 4 2 8 8 C 1.53148 * 108.98232 * 58.89068 * 7 6 4 9 9 C 1.52727 * 108.68199 * 292.74123 * 8 7 6 10 10 C 1.51663 * 111.06868 * 54.59748 * 9 8 7 11 11 H 1.08995 * 111.88349 * 193.49392 * 10 9 8 12 12 C 1.53506 * 114.25050 * 64.48127 * 10 9 8 13 13 H 1.08999 * 113.69912 * 101.82088 * 12 10 9 14 14 N 1.46902 * 113.69555 * 330.66431 * 12 10 9 15 15 C 1.46904 * 111.00406 * 104.79512 * 14 12 10 16 16 C 1.50695 * 109.47492 * 179.97438 * 15 14 12 17 17 C 1.38634 * 119.74877 * 269.72547 * 16 15 14 18 18 C 1.37617 * 120.24736 * 179.76051 * 17 16 15 19 19 C 1.40724 * 119.74512 * 0.49002 * 18 17 16 20 20 C 1.41394 * 120.24347 * 179.78911 * 19 18 17 21 21 H 1.07995 * 120.00462 * 26.52015 * 20 19 18 22 22 C 1.39954 * 119.99417 * 206.52057 * 20 19 18 23 23 N 1.30818 * 120.00303 * 12.88815 * 22 20 19 24 24 Si 1.86798 * 119.99565 * 192.88417 * 22 20 19 25 25 H 1.48495 * 109.47165 * 90.00419 * 24 22 20 26 26 H 1.48501 * 109.46902 * 210.00317 * 24 22 20 27 27 H 1.48500 * 109.47385 * 330.00011 * 24 22 20 28 28 C 1.40716 * 119.50903 * 359.76058 * 19 18 17 29 29 C 1.37618 * 119.74586 * 0.02562 * 28 19 18 30 30 H 1.08995 * 109.46812 * 299.31717 * 1 2 3 31 31 H 1.08992 * 109.47045 * 59.31940 * 1 2 3 32 32 H 1.08998 * 109.46512 * 179.31537 * 1 2 3 33 33 H 1.09005 * 109.46818 * 171.85917 * 3 2 1 34 34 H 1.08999 * 109.47298 * 291.86300 * 3 2 1 35 35 H 1.08999 * 109.46987 * 51.86312 * 3 2 1 36 36 H 1.00900 * 110.99962 * 346.86907 * 6 4 2 37 37 H 1.09000 * 109.55480 * 299.04078 * 7 6 4 38 38 H 1.08998 * 109.63667 * 178.78989 * 7 6 4 39 39 H 1.09005 * 109.59901 * 172.98355 * 8 7 6 40 40 H 1.08994 * 109.73712 * 52.58348 * 8 7 6 41 41 H 1.09004 * 109.15850 * 294.18301 * 9 8 7 42 42 H 1.08999 * 109.15746 * 175.00709 * 9 8 7 43 43 H 1.00904 * 110.99760 * 228.74789 * 14 12 10 44 44 H 1.09004 * 109.46700 * 300.00447 * 15 14 12 45 45 H 1.09004 * 109.47013 * 59.99509 * 15 14 12 46 46 H 1.07997 * 119.87298 * 0.02562 * 17 16 15 47 47 H 1.07997 * 120.13322 * 180.22953 * 18 17 16 48 48 H 0.96991 * 120.00359 * 179.97438 * 23 22 20 49 49 H 1.07996 * 120.12721 * 179.97438 * 28 19 18 50 50 H 1.07997 * 119.87455 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4090 0.0000 4 6 2.1483 -0.9330 -1.0596 5 1 2.5734 -0.3935 -1.9060 6 7 1.2259 -1.9462 -1.4973 7 6 1.8508 -3.2607 -1.6500 8 6 2.4513 -3.6858 -0.3068 9 6 3.6184 -2.7576 0.0231 10 6 3.1854 -1.3045 -0.0098 11 1 4.0387 -0.6263 -0.0118 12 6 2.1474 -0.9315 1.0578 13 1 2.5690 -0.4042 1.9135 14 7 1.2726 -2.0462 1.4455 15 6 1.6490 -2.5775 2.7624 16 6 0.7313 -3.7162 3.1257 17 6 -0.4383 -3.4610 3.8248 18 6 -1.2861 -4.4926 4.1576 19 6 -0.9569 -5.8117 3.7945 20 6 -1.8182 -6.8801 4.1350 21 1 -2.8744 -6.7001 4.2710 22 6 -1.3020 -8.1710 4.2957 23 7 -0.0093 -8.3525 4.3823 24 14 -2.4588 -9.6348 4.3867 25 1 -2.6925 -10.1668 3.0202 26 1 -1.8519 -10.6934 5.2330 27 1 -3.7517 -9.2079 4.9795 28 6 0.2354 -6.0595 3.0896 29 6 1.0661 -5.0119 2.7635 30 1 -0.3633 0.5032 0.8960 31 1 -0.3633 0.5243 -0.8838 32 1 -0.3632 -1.0276 -0.0123 33 1 3.2048 1.3471 0.1455 34 1 1.9155 1.8928 -0.9537 35 1 1.6835 1.9909 0.8083 36 1 0.4254 -1.9953 -0.8850 37 1 2.6392 -3.2048 -2.4006 38 1 1.1016 -3.9885 -1.9613 39 1 2.8091 -4.7132 -0.3751 40 1 1.6944 -3.6134 0.4742 41 1 4.4141 -2.9105 -0.7060 42 1 3.9951 -2.9962 1.0177 43 1 0.3032 -1.7666 1.4320 44 1 2.6779 -2.9358 2.7290 45 1 1.5630 -1.7892 3.5103 46 1 -0.6870 -2.4483 4.1056 47 1 -2.1986 -4.2912 4.6991 48 1 0.3484 -9.2470 4.4940 49 1 0.4981 -7.0680 2.8063 50 1 1.9820 -5.1997 2.2228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576391135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:21 Heat of formation + Delta-G solvation = 33.523689 kcal Electronic energy + Delta-G solvation = -27460.407974 eV Core-core repulsion = 24065.805185 eV Total energy + Delta-G solvation = -3394.602789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41341 -39.48665 -36.52771 -36.11412 -34.87706 -33.17066 -31.65718 -31.07132 -30.70950 -28.54608 -27.96070 -26.02343 -24.63221 -24.23170 -23.00093 -22.64029 -21.64191 -20.34427 -19.19626 -19.13976 -17.20125 -17.16638 -16.94989 -16.60008 -15.93223 -15.64456 -15.35987 -15.26584 -15.02951 -14.81046 -14.26058 -14.15620 -14.11730 -13.77211 -13.66190 -13.40419 -13.26057 -13.19896 -13.13595 -12.96334 -12.77892 -12.74793 -12.34353 -12.22072 -12.12917 -11.93199 -11.78188 -11.63515 -11.41707 -11.21299 -11.12792 -11.05905 -10.98524 -10.77106 -9.31504 -9.22999 -9.09768 -8.78190 -8.58431 -6.33275 0.96572 1.18380 1.37640 1.49881 1.51462 2.21220 2.72251 3.20587 3.42461 3.53326 3.71374 3.83161 3.87144 4.04729 4.25267 4.29738 4.33577 4.35913 4.40969 4.51990 4.57851 4.59512 4.63915 4.76264 4.80185 4.83928 4.86581 4.91202 5.00021 5.03521 5.06306 5.09444 5.13282 5.17922 5.18802 5.26625 5.35203 5.40564 5.42432 5.49431 5.53712 5.55785 5.74235 5.97409 6.01935 6.13359 6.18169 6.30533 6.42477 6.46020 6.51040 6.71574 6.74859 6.97484 7.07086 8.36982 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.003331 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.850275 B = 8402.845407 C = 8807.086609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.120 4.120 4 C 0.097 3.903 5 H 0.075 0.925 6 N -0.673 5.673 7 C 0.073 3.927 8 C -0.180 4.180 9 C -0.084 4.084 10 C -0.122 4.122 11 H 0.098 0.902 12 C 0.064 3.936 13 H 0.057 0.943 14 N -0.658 5.658 15 C 0.135 3.865 16 C -0.192 4.192 17 C -0.086 4.086 18 C -0.239 4.239 19 C 0.079 3.921 20 C -0.503 4.503 21 H 0.072 0.928 22 C 0.033 3.967 23 N -0.832 5.832 24 Si 0.981 3.019 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.259 1.259 28 C -0.186 4.186 29 C -0.082 4.082 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.346 0.654 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.342 0.658 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.285 0.715 49 H 0.097 0.903 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 14.906 -8.702 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.178 4.178 4 C -0.015 4.015 5 H 0.093 0.907 6 N -0.306 5.306 7 C -0.057 4.057 8 C -0.219 4.219 9 C -0.122 4.122 10 C -0.143 4.143 11 H 0.116 0.884 12 C -0.046 4.046 13 H 0.075 0.925 14 N -0.291 5.291 15 C 0.007 3.993 16 C -0.193 4.193 17 C -0.104 4.104 18 C -0.259 4.259 19 C 0.077 3.923 20 C -0.533 4.533 21 H 0.090 0.910 22 C -0.181 4.181 23 N -0.459 5.459 24 Si 0.802 3.198 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.183 1.183 28 C -0.206 4.206 29 C -0.101 4.101 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.164 0.836 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.132 0.868 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.833 14.427 -9.648 18.310 hybrid contribution -0.449 -0.830 1.802 2.034 sum 5.383 13.598 -7.846 16.596 Atomic orbital electron populations 1.21684 0.94015 1.01669 1.02586 1.22420 0.95767 0.95434 0.95387 1.21514 1.00720 0.92908 1.02681 1.21683 0.92695 0.92792 0.94288 0.90738 1.59623 1.10130 1.06160 1.54697 1.21652 0.98028 0.89986 0.95987 1.22691 1.01128 0.96794 1.01262 1.20699 0.97152 0.94508 0.99806 1.22473 0.97411 0.96897 0.97541 0.88426 1.22848 0.95081 0.90740 0.95912 0.92500 1.60657 1.07284 1.32726 1.28412 1.20464 0.96942 0.93347 0.88568 1.19269 0.98349 0.93706 1.08019 1.20670 0.94186 0.97407 0.98159 1.21158 1.02031 0.93697 1.08987 1.17951 0.92677 0.92707 0.88939 1.19848 0.95858 0.93402 1.44161 0.90971 1.26713 0.96957 1.02831 0.91583 1.69861 1.14454 1.25036 1.36515 0.85213 0.78769 0.76533 0.79243 1.18787 1.19359 1.18277 1.21317 0.97896 0.98079 1.03279 1.20665 0.97876 0.92784 0.98740 0.91935 0.91182 0.92357 0.91867 0.91254 0.91808 0.82952 0.92085 0.92044 0.94920 0.86394 0.93460 0.93867 0.83602 0.91945 0.94952 0.86762 0.88839 0.90426 0.88455 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.79 71.98 0.56 -2.00 16 2 C -0.09 -1.60 1.34 -51.51 -0.07 -1.67 16 3 C -0.12 -1.68 9.07 71.98 0.65 -1.02 16 4 C 0.10 2.04 3.96 45.59 0.18 2.22 16 5 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 6 N -0.67 -16.30 6.31 -498.60 -3.14 -19.44 16 7 C 0.07 1.90 6.55 86.46 0.57 2.47 16 8 C -0.18 -5.13 5.70 30.55 0.17 -4.95 16 9 C -0.08 -2.11 5.44 30.06 0.16 -1.95 16 10 C -0.12 -2.61 3.63 -11.34 -0.04 -2.65 16 11 H 0.10 1.81 7.46 -2.39 -0.02 1.79 16 12 C 0.06 1.38 3.54 45.38 0.16 1.54 16 13 H 0.06 1.22 7.86 -2.39 -0.02 1.20 16 14 N -0.66 -16.94 1.88 -493.16 -0.93 -17.87 16 15 C 0.13 4.11 5.19 85.55 0.44 4.56 16 16 C -0.19 -7.57 5.31 -19.68 -0.10 -7.67 16 17 C -0.09 -3.53 9.67 22.22 0.21 -3.31 16 18 C -0.24 -11.55 9.80 22.73 0.22 -11.33 16 19 C 0.08 4.30 5.57 -21.29 -0.12 4.18 16 20 C -0.50 -27.53 9.07 23.46 0.21 -27.32 16 21 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 22 C 0.03 1.68 5.23 85.26 0.45 2.13 16 23 N -0.83 -44.41 10.81 21.83 0.24 -44.18 16 24 Si 0.98 39.08 29.58 68.60 2.03 41.11 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 26 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 28 C -0.19 -9.82 8.68 22.73 0.20 -9.62 16 29 C -0.08 -3.70 9.07 22.22 0.20 -3.49 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.21 4.25 -2.39 -0.01 1.20 16 33 H 0.06 0.82 7.21 -2.38 -0.02 0.81 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.35 8.69 4.69 -89.69 -0.42 8.27 16 37 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.12 3.78 3.92 -2.39 -0.01 3.77 16 41 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.04 1.17 7.24 -2.39 -0.02 1.15 16 43 H 0.34 8.87 6.07 -89.69 -0.54 8.32 16 44 H 0.06 1.96 7.16 -2.38 -0.02 1.94 16 45 H 0.03 0.93 8.07 -2.39 -0.02 0.91 16 46 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 47 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 48 H 0.29 13.84 8.30 -92.72 -0.77 13.07 16 49 H 0.10 5.49 6.13 -2.91 -0.02 5.47 16 50 H 0.10 4.12 8.00 -2.91 -0.02 4.10 16 Total: -1.00 -56.15 368.05 2.23 -53.92 By element: Atomic # 1 Polarization: 46.39 SS G_CDS: -0.03 Total: 46.36 kcal Atomic # 6 Polarization: -63.96 SS G_CDS: 4.06 Total: -59.90 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -3.83 Total: -81.48 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -56.15 2.23 -53.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576391135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.439 kcal (2) G-P(sol) polarization free energy of solvation -56.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds