Wall clock time and date at job start Tue Mar 31 2020 11:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 112.87619 * 2 1 4 4 C 1.53885 * 113.65085 * 131.30833 * 2 1 3 5 5 H 1.09000 * 113.69577 * 25.45704 * 4 2 1 6 6 N 1.46899 * 113.69550 * 254.39862 * 4 2 1 7 7 C 1.46901 * 111.00387 * 154.99867 * 6 4 2 8 8 C 1.50697 * 109.47114 * 179.97438 * 7 6 4 9 9 C 1.38633 * 119.75040 * 90.00222 * 8 7 6 10 10 C 1.37612 * 120.24983 * 179.97438 * 9 8 7 11 11 C 1.40712 * 119.74491 * 0.02562 * 10 9 8 12 12 C 1.41400 * 120.24460 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00005 * 335.82361 * 12 11 10 14 14 C 1.39950 * 120.00119 * 155.83126 * 12 11 10 15 15 N 1.30821 * 119.99729 * 332.68742 * 14 12 11 16 16 Si 1.86801 * 120.00037 * 152.96741 * 14 12 11 17 17 H 1.48506 * 109.46866 * 179.71927 * 16 14 12 18 18 H 1.48498 * 109.47077 * 299.71979 * 16 14 12 19 19 H 1.48504 * 109.47047 * 59.72105 * 16 14 12 20 20 C 1.40709 * 119.51340 * 0.27015 * 11 10 9 21 21 C 1.37627 * 119.74305 * 359.45248 * 20 11 10 22 22 C 1.53502 * 86.57455 * 139.98040 * 4 2 1 23 23 H 1.08997 * 112.30832 * 87.43406 * 22 4 2 24 24 C 1.51670 * 114.25291 * 215.40878 * 22 4 2 25 25 C 1.52721 * 111.06872 * 64.48028 * 24 22 4 26 26 C 1.53143 * 108.68655 * 54.59137 * 25 24 22 27 27 N 1.46349 * 108.98752 * 292.74765 * 26 25 24 28 28 C 1.45791 * 113.31978 * 59.14431 * 27 26 25 29 29 H 1.08995 * 112.38092 * 93.03002 * 28 27 26 30 30 H 1.09003 * 109.47366 * 299.90129 * 1 2 3 31 31 H 1.08996 * 109.47274 * 59.90383 * 1 2 3 32 32 H 1.08998 * 109.47028 * 179.90328 * 1 2 3 33 33 H 1.09005 * 109.47171 * 171.80365 * 3 2 1 34 34 H 1.08997 * 109.47111 * 291.79694 * 3 2 1 35 35 H 1.08997 * 109.47197 * 51.80766 * 3 2 1 36 36 H 1.00906 * 111.00164 * 31.03769 * 6 4 2 37 37 H 1.08998 * 109.46865 * 59.99903 * 7 6 4 38 38 H 1.09005 * 109.46729 * 300.00140 * 7 6 4 39 39 H 1.08003 * 119.87283 * 359.97438 * 9 8 7 40 40 H 1.08004 * 120.12688 * 180.02562 * 10 9 8 41 41 H 0.97005 * 120.00215 * 354.66844 * 15 14 12 42 42 H 1.08001 * 120.13070 * 179.72317 * 20 11 10 43 43 H 1.08001 * 119.87417 * 180.27424 * 21 20 11 44 44 H 1.09002 * 109.15490 * 304.07389 * 24 22 4 45 45 H 1.09002 * 109.16015 * 184.89144 * 24 22 4 46 46 H 1.09000 * 109.60230 * 294.83465 * 25 24 22 47 47 H 1.09001 * 109.60062 * 174.35323 * 25 24 22 48 48 H 1.09002 * 109.55808 * 172.89034 * 26 25 24 49 49 H 1.09005 * 109.55312 * 52.59800 * 26 25 24 50 50 H 1.00906 * 110.99791 * 293.45571 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1247 1.4097 0.0000 4 6 2.1473 -0.9305 1.0588 5 1 1.4975 -1.7563 1.3486 6 7 2.7155 -0.2185 2.2113 7 6 2.7413 -1.0791 3.4015 8 6 3.3298 -0.3163 4.5603 9 6 2.4998 0.4185 5.3927 10 6 3.0261 1.1185 6.4542 11 6 4.4125 1.0867 6.6927 12 6 4.9646 1.8016 7.7806 13 1 4.4422 2.6552 8.1867 14 6 6.1880 1.4031 8.3311 15 7 6.5632 0.1522 8.2547 16 14 7.2817 2.6559 9.1819 17 1 8.5084 1.9841 9.6811 18 1 7.6579 3.7205 8.2174 19 1 6.5481 3.2590 10.3236 20 6 5.2462 0.3426 5.8376 21 6 4.6972 -0.3544 4.7854 22 6 3.1854 -1.3044 -0.0083 23 1 4.0386 -0.6262 -0.0111 24 6 3.6333 -2.7527 0.0388 25 6 2.4747 -3.6963 -0.2768 26 6 1.8651 -3.2919 -1.6223 27 7 1.2273 -1.9822 -1.4816 28 6 2.1483 -0.9342 -1.0586 29 1 2.5795 -0.3953 -1.9021 30 1 -0.3634 0.5123 0.8909 31 1 -0.3633 0.5153 -0.8891 32 1 -0.3633 -1.0276 -0.0017 33 1 3.2032 1.3490 0.1465 34 1 1.9144 1.8927 -0.9542 35 1 1.6806 1.9914 0.8077 36 1 2.2103 0.6358 2.3936 37 1 3.3508 -1.9599 3.1997 38 1 1.7257 -1.3887 3.6480 39 1 1.4360 0.4417 5.2074 40 1 2.3776 1.6900 7.1017 41 1 5.9611 -0.5132 7.8862 42 1 6.3122 0.3149 6.0087 43 1 5.3345 -0.9299 4.1304 44 1 4.0159 -2.9766 1.0346 45 1 4.4281 -2.9053 -0.6914 46 1 1.7185 -3.6210 0.5046 47 1 2.8428 -4.7206 -0.3352 48 1 1.1210 -4.0297 -1.9222 49 1 2.6502 -3.2362 -2.3764 50 1 0.4296 -2.0328 -0.8657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576391145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:27 Heat of formation + Delta-G solvation = 9.176885 kcal Electronic energy + Delta-G solvation = -26590.022018 eV Core-core repulsion = 23194.363473 eV Total energy + Delta-G solvation = -3395.658545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.26036 -39.74702 -37.13180 -36.16213 -34.84624 -33.18862 -31.60070 -31.08187 -30.84507 -28.48293 -28.04270 -26.09990 -24.90423 -23.92791 -23.24909 -22.99350 -21.82492 -20.47202 -19.85200 -19.05416 -17.48149 -16.73783 -16.60793 -16.36383 -16.23049 -15.81517 -15.60997 -15.39896 -15.27671 -14.94603 -14.72150 -14.32033 -14.02775 -13.84611 -13.77871 -13.73800 -13.42123 -13.40905 -13.08769 -12.96802 -12.70546 -12.66184 -12.47634 -12.25106 -12.10362 -12.02895 -11.98791 -11.76096 -11.51827 -11.37766 -11.26724 -11.11599 -10.85080 -10.81394 -9.59855 -9.48418 -9.27927 -9.17685 -9.08853 -6.45295 0.87557 0.95636 1.48791 1.61787 1.78508 2.31847 2.62115 3.20292 3.33681 3.39523 3.52308 3.63598 3.76390 3.88386 4.07826 4.12442 4.17672 4.19106 4.24005 4.32966 4.43414 4.46317 4.53470 4.59659 4.67815 4.70956 4.80305 4.83917 4.87059 4.91098 4.94733 4.98106 5.05367 5.09959 5.11564 5.14324 5.18510 5.23508 5.24713 5.35914 5.43359 5.48140 5.55080 5.73667 5.78466 5.84318 6.08553 6.18673 6.25380 6.27976 6.41261 6.50263 6.51254 6.80169 6.94275 8.01453 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.002729 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.147566 B =10257.192633 C =10683.982479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.121 4.121 4 C 0.069 3.931 5 H 0.065 0.935 6 N -0.672 5.672 7 C 0.136 3.864 8 C -0.206 4.206 9 C -0.072 4.072 10 C -0.245 4.245 11 C 0.071 3.929 12 C -0.563 4.563 13 H 0.070 0.930 14 C 0.004 3.996 15 N -0.816 5.816 16 Si 1.115 2.885 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.256 1.256 20 C -0.241 4.241 21 C -0.065 4.065 22 C -0.118 4.118 23 H 0.080 0.920 24 C -0.107 4.107 25 C -0.152 4.152 26 C 0.065 3.935 27 N -0.678 5.678 28 C 0.096 3.904 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.340 0.660 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.282 0.718 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.072 0.928 50 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -4.313 -18.104 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C -0.178 4.178 4 C -0.041 4.041 5 H 0.083 0.917 6 N -0.303 5.303 7 C 0.008 3.992 8 C -0.207 4.207 9 C -0.090 4.090 10 C -0.265 4.265 11 C 0.068 3.932 12 C -0.591 4.591 13 H 0.088 0.912 14 C -0.212 4.212 15 N -0.439 5.439 16 Si 0.932 3.068 17 H -0.195 1.195 18 H -0.189 1.189 19 H -0.181 1.181 20 C -0.260 4.260 21 C -0.084 4.084 22 C -0.140 4.140 23 H 0.099 0.901 24 C -0.145 4.145 25 C -0.191 4.191 26 C -0.064 4.064 27 N -0.312 5.312 28 C -0.015 4.015 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.715 -4.200 -18.188 20.198 hybrid contribution -1.927 -0.545 0.914 2.201 sum -9.642 -4.745 -17.275 20.344 Atomic orbital electron populations 1.21694 0.93122 1.01919 1.02422 1.22397 0.95957 0.95413 0.95171 1.21426 1.00747 0.93648 1.02000 1.23260 0.95252 0.95987 0.89563 0.91720 1.60651 1.58120 1.07384 1.04158 1.20421 0.97285 0.94121 0.87367 1.19290 0.93014 1.07571 1.00836 1.20720 0.98336 0.95804 0.94159 1.21087 0.94176 1.08498 1.02725 1.17982 0.92271 0.90649 0.92295 1.20758 1.07819 1.14702 1.15839 0.91191 1.28433 0.98013 0.99702 0.95039 1.70576 1.39351 1.02690 1.31310 0.83039 0.74540 0.72778 0.76426 1.19514 1.18949 1.18070 1.21076 0.97791 1.07596 0.99554 1.20636 0.94986 0.97286 0.95453 1.22468 0.97986 0.96871 0.96631 0.90146 1.21007 0.98333 0.94205 1.00925 1.22159 0.98167 0.99746 0.99051 1.21916 0.99077 0.89832 0.95599 1.59806 1.10055 1.05714 1.55580 1.21979 0.92389 0.92600 0.94540 0.89939 0.92648 0.91097 0.91860 0.92732 0.91267 0.92508 0.84014 0.92218 0.95244 0.86533 0.88738 0.90572 0.89912 0.88087 0.93597 0.91906 0.92752 0.90546 0.89210 0.90971 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.67 71.98 0.62 -1.48 16 2 C -0.09 -1.64 1.23 -51.51 -0.06 -1.71 16 3 C -0.12 -2.37 7.99 71.98 0.58 -1.79 16 4 C 0.07 1.55 2.92 45.38 0.13 1.69 16 5 H 0.07 1.48 6.60 -2.39 -0.02 1.46 16 6 N -0.67 -19.02 5.99 -493.16 -2.95 -21.97 16 7 C 0.14 4.41 5.64 85.56 0.48 4.89 16 8 C -0.21 -8.45 5.41 -19.68 -0.11 -8.56 16 9 C -0.07 -3.04 9.67 22.22 0.21 -2.82 16 10 C -0.25 -12.12 9.80 22.73 0.22 -11.90 16 11 C 0.07 3.88 5.31 -21.29 -0.11 3.77 16 12 C -0.56 -31.30 8.98 23.46 0.21 -31.09 16 13 H 0.07 3.80 7.97 -2.91 -0.02 3.77 16 14 C 0.00 0.23 4.90 85.26 0.42 0.64 16 15 N -0.82 -45.39 12.32 21.83 0.27 -45.12 16 16 Si 1.12 44.25 30.01 68.60 2.06 46.30 16 17 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 20 C -0.24 -12.83 7.99 22.73 0.18 -12.65 16 21 C -0.06 -3.01 9.67 22.22 0.21 -2.79 16 22 C -0.12 -2.59 3.38 -11.34 -0.04 -2.63 16 23 H 0.08 2.06 7.46 -2.39 -0.02 2.04 16 24 C -0.11 -2.22 5.67 30.07 0.17 -2.05 16 25 C -0.15 -2.53 5.89 30.55 0.18 -2.35 16 26 C 0.06 0.96 6.56 86.46 0.57 1.52 16 27 N -0.68 -11.13 6.49 -494.46 -3.21 -14.34 16 28 C 0.10 1.79 4.10 45.24 0.19 1.98 16 29 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.89 5.78 -2.39 -0.01 0.88 16 33 H 0.05 1.25 7.11 -2.38 -0.02 1.23 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 36 H 0.34 9.72 7.42 -89.69 -0.67 9.05 16 37 H 0.06 1.95 8.08 -2.39 -0.02 1.94 16 38 H 0.03 0.89 8.07 -2.38 -0.02 0.87 16 39 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.28 16.35 6.78 -92.70 -0.63 15.72 16 42 H 0.08 4.67 6.49 -2.91 -0.02 4.65 16 43 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 0.97 7.02 -2.39 -0.02 0.95 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 1.10 8.13 -2.38 -0.02 1.08 16 50 H 0.35 5.27 5.57 -89.69 -0.50 4.77 16 Total: -1.00 -58.71 379.30 0.13 -58.59 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.10 Total: 43.88 kcal Atomic # 6 Polarization: -71.39 SS G_CDS: 4.06 Total: -67.33 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -5.89 Total: -81.44 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.06 Total: 46.30 kcal Total: -58.71 0.13 -58.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576391145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.762 kcal (2) G-P(sol) polarization free energy of solvation -58.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds