Wall clock time and date at job start Tue Mar 31 2020 10:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99869 * 2 1 4 4 C 1.53003 * 109.54485 * 58.13352 * 3 2 1 5 5 N 1.46498 * 109.47203 * 59.53033 * 4 3 2 6 6 C 1.34771 * 120.00042 * 174.83741 * 5 4 3 7 7 O 1.21282 * 120.00190 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00023 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.47233 * 320.01066 * 8 6 5 10 10 N 1.46897 * 109.47437 * 200.00176 * 8 6 5 11 11 C 1.53005 * 109.46845 * 80.00511 * 8 6 5 12 12 C 1.52993 * 109.47194 * 184.99763 * 11 8 6 13 13 C 1.53005 * 109.47194 * 179.97438 * 12 11 8 14 14 C 1.50703 * 109.47021 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99388 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00651 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99370 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47292 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47021 * 120.00260 * 18 16 14 21 21 H 1.48498 * 109.46923 * 239.99549 * 18 16 14 22 22 C 1.53181 * 109.54019 * 178.31083 * 3 2 1 23 23 C 1.53101 * 109.15743 * 63.06311 * 22 3 2 24 24 O 1.42909 * 109.48693 * 57.47275 * 23 22 3 25 25 C 1.42905 * 114.09708 * 298.88982 * 24 23 22 26 26 C 1.53086 * 109.41653 * 61.15647 * 25 24 23 27 27 H 1.09005 * 109.47009 * 59.62894 * 1 2 3 28 28 H 1.08996 * 109.47256 * 179.62881 * 1 2 3 29 29 H 1.08997 * 109.47223 * 299.63216 * 1 2 3 30 30 H 1.09006 * 109.46905 * 299.53034 * 4 3 2 31 31 H 1.08995 * 109.46981 * 179.53412 * 4 3 2 32 32 H 0.97005 * 119.99949 * 354.83943 * 5 4 3 33 33 H 1.00902 * 111.00106 * 300.00933 * 10 8 6 34 34 H 1.00902 * 110.99804 * 63.95652 * 10 8 6 35 35 H 1.09002 * 109.46829 * 305.00378 * 11 8 6 36 36 H 1.09005 * 109.47079 * 64.99563 * 11 8 6 37 37 H 1.08993 * 109.47603 * 299.99990 * 12 11 8 38 38 H 1.09006 * 109.46941 * 60.00349 * 12 11 8 39 39 H 1.09005 * 109.46674 * 300.00104 * 13 12 11 40 40 H 1.08995 * 109.47155 * 59.99889 * 13 12 11 41 41 H 0.97000 * 120.00138 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.51956 * 182.88275 * 22 3 2 43 43 H 1.08995 * 109.51821 * 303.06427 * 22 3 2 44 44 H 1.08995 * 109.40641 * 297.49406 * 23 22 3 45 45 H 1.08994 * 109.49281 * 177.50661 * 23 22 3 46 46 H 1.09003 * 109.47442 * 301.17148 * 25 24 23 47 47 H 1.08996 * 109.48532 * 181.14616 * 25 24 23 48 48 H 1.08997 * 109.52094 * 182.48566 * 26 25 24 49 49 H 1.09008 * 109.57336 * 62.32790 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5230 2.0827 1.2246 5 7 1.9097 1.3669 2.4429 6 6 1.6771 1.9178 3.6507 7 8 1.1472 3.0059 3.7290 8 6 2.0743 1.1812 4.9040 9 1 1.8536 0.1202 4.7873 10 7 1.3204 1.7156 6.0459 11 6 3.5729 1.3661 5.1508 12 6 4.0006 0.5186 6.3506 13 6 5.4993 0.7030 6.5971 14 6 5.9206 -0.1324 7.7785 15 1 5.1922 -0.7343 8.3015 16 6 7.2358 -0.1274 8.1922 17 7 8.1228 0.6059 7.5557 18 14 7.7579 -1.1623 9.6571 19 1 6.5803 -1.8906 10.1935 20 1 8.7912 -2.1396 9.2296 21 1 8.3177 -0.2799 10.7122 22 6 3.5369 1.1867 0.0426 23 6 4.0213 0.4791 -1.2258 24 8 3.5802 1.2053 -2.3748 25 6 2.1595 1.3061 -2.4914 26 6 1.6004 2.0488 -1.2751 27 1 -0.3633 0.5196 -0.8867 28 1 -0.3633 -1.0276 -0.0067 29 1 -0.3633 0.5081 0.8932 30 1 0.4376 2.1764 1.1872 31 1 1.9735 3.0752 1.2278 32 1 2.3332 0.4964 2.3803 33 1 1.5081 2.6986 6.1749 34 1 0.3315 1.5477 5.9367 35 1 4.1282 1.0515 4.2672 36 1 3.7806 2.4165 5.3554 37 1 3.4453 0.8332 7.2341 38 1 3.7930 -0.5318 6.1459 39 1 6.0543 0.3880 5.7133 40 1 5.7074 1.7532 6.8015 41 1 9.0479 0.6097 7.8470 42 1 3.9783 2.1819 0.0942 43 1 3.8330 0.6100 0.9188 44 1 3.6129 -0.5310 -1.2554 45 1 5.1102 0.4310 -1.2221 46 1 1.7268 0.3067 -2.5376 47 1 1.9071 1.8538 -3.3994 48 1 0.5131 2.0880 -1.3404 49 1 2.0007 3.0624 -1.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578926755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:25 Heat of formation + Delta-G solvation = -150.351534 kcal Electronic energy + Delta-G solvation = -27292.961967 eV Core-core repulsion = 23447.243736 eV Total energy + Delta-G solvation = -3845.718231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.93266 -39.69325 -37.70241 -35.77480 -34.91359 -33.33110 -32.75305 -31.61828 -31.34398 -28.57640 -27.43645 -27.27811 -25.00416 -23.99096 -23.12086 -22.07455 -20.49924 -20.06887 -19.98051 -17.50578 -17.12402 -16.78748 -16.34675 -16.29962 -15.89101 -15.87425 -15.57723 -15.46641 -15.01508 -14.66801 -14.42049 -14.17778 -13.82227 -13.42430 -13.21760 -13.01876 -12.95745 -12.80602 -12.55724 -12.36743 -11.94194 -11.76682 -11.65599 -11.47659 -11.14756 -11.02166 -10.75731 -10.74160 -10.60450 -10.41516 -10.25864 -10.17353 -9.77952 -9.60224 -9.28279 -9.20888 -9.02169 -8.57348 -8.29163 -5.94684 -3.96174 2.54227 2.92130 3.33530 3.34489 3.41909 3.46648 3.55707 4.11023 4.13760 4.27438 4.50314 4.54996 4.59967 4.81409 4.83473 4.85442 4.92686 5.01117 5.03578 5.15628 5.17357 5.21883 5.26185 5.32524 5.40132 5.40460 5.41437 5.44141 5.56605 5.65357 5.78334 5.93195 6.12043 6.20256 6.44421 6.68736 6.82584 6.85416 7.01559 7.08450 7.25099 7.37308 7.50755 7.75827 7.91077 8.06957 8.09321 8.50444 9.11713 9.67672 11.16779 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.002708 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.051756 B =10338.829978 C =11493.425347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.371 6.371 3 C 0.105 3.895 4 C 0.096 3.904 5 N -0.722 5.722 6 C 0.483 3.517 7 O -0.552 6.552 8 C 0.078 3.922 9 H 0.100 0.900 10 N -0.811 5.811 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.019 3.981 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.142 4.142 23 C 0.063 3.937 24 O -0.382 6.382 25 C 0.068 3.932 26 C -0.179 4.179 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.406 0.594 33 H 0.350 0.650 34 H 0.337 0.663 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.012 0.988 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.535 0.537 -21.186 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C 0.066 3.934 4 C -0.029 4.029 5 N -0.376 5.376 6 C 0.268 3.732 7 O -0.430 6.430 8 C -0.038 4.038 9 H 0.118 0.882 10 N -0.339 5.339 11 C -0.141 4.141 12 C -0.137 4.137 13 C -0.018 4.018 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.179 4.179 23 C -0.013 4.013 24 O -0.301 6.301 25 C -0.009 4.009 26 C -0.217 4.217 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.242 0.758 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.082 0.762 -20.794 26.298 hybrid contribution -0.375 -0.101 0.206 0.439 sum -16.457 0.661 -20.589 26.366 Atomic orbital electron populations 1.22842 0.81169 1.03035 1.00345 1.87983 1.19800 1.26385 1.94825 1.21787 0.94593 0.83838 0.93216 1.21871 1.00363 0.96613 0.84058 1.46037 1.63125 1.23246 1.05163 1.22596 0.77602 0.86767 0.86250 1.90668 1.43634 1.21291 1.87398 1.21762 0.97649 0.99062 0.85278 0.88205 1.59045 1.12053 1.23560 1.39249 1.21648 0.89639 1.02003 1.00824 1.21537 0.99578 0.97126 0.95507 1.19126 0.89228 0.96959 0.96478 1.21319 0.93787 1.26426 1.13843 0.92616 1.25032 0.96877 0.95761 0.96927 1.69977 1.02623 1.40426 1.40689 0.86568 0.78556 0.80234 0.82839 1.19725 1.21112 1.21081 1.22223 0.91919 1.03482 1.00299 1.22563 1.00076 0.94736 0.83966 1.87941 1.21283 1.75944 1.44938 1.22440 0.81642 0.99787 0.97057 1.22723 1.02258 1.01177 0.95581 0.93737 0.89326 0.93545 0.91435 0.90303 0.75773 0.83583 0.85089 0.91947 0.91953 0.91846 0.93673 0.96957 0.96800 0.93174 0.89238 0.89459 0.92126 0.88405 0.92592 0.88849 0.90189 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.21 101.05 1.03 1.18 16 2 O -0.37 -3.06 8.98 -35.23 -0.32 -3.38 16 3 C 0.11 0.84 0.36 -90.43 -0.03 0.81 16 4 C 0.10 0.90 4.16 -4.04 -0.02 0.89 16 5 N -0.72 -7.60 5.12 -60.29 -0.31 -7.90 16 6 C 0.48 6.42 7.07 -10.99 -0.08 6.34 16 7 O -0.55 -9.02 16.24 5.56 0.09 -8.92 16 8 C 0.08 1.06 3.15 -68.86 -0.22 0.84 16 9 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 10 N -0.81 -11.07 8.44 -5.65 -0.05 -11.12 16 11 C -0.10 -1.68 4.84 -26.73 -0.13 -1.81 16 12 C -0.10 -2.03 5.04 -26.73 -0.13 -2.16 16 13 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.14 -1.19 4.94 -26.59 -0.13 -1.33 16 23 C 0.06 0.54 6.69 37.21 0.25 0.79 16 24 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16 25 C 0.07 0.49 6.69 37.20 0.25 0.74 16 26 C -0.18 -1.22 4.70 -26.60 -0.12 -1.34 16 27 H 0.04 0.23 6.38 -51.93 -0.33 -0.10 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.33 6.42 -51.93 -0.33 -0.01 16 30 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 31 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.41 3.83 7.36 -40.82 -0.30 3.53 16 33 H 0.35 4.99 8.58 -39.29 -0.34 4.65 16 34 H 0.34 3.98 9.06 -39.29 -0.36 3.63 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.34 7.75 -51.93 -0.40 0.93 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.75 7.12 -51.93 -0.37 0.38 16 44 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.40 7.82 -51.93 -0.41 0.00 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.44 6.43 -51.93 -0.33 0.11 16 49 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -33.36 386.15 -7.84 -41.20 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.53 Total: 6.30 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 0.12 Total: -8.29 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.38 Total: -45.54 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.61 Total: -16.37 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.36 -7.84 -41.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578926755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.148 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds