Wall clock time and date at job start Tue Mar 31 2020 10:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99869 * 2 1 4 4 C 1.53003 * 109.54485 * 58.13352 * 3 2 1 5 5 N 1.46498 * 109.47203 * 59.53033 * 4 3 2 6 6 C 1.34771 * 120.00042 * 174.83741 * 5 4 3 7 7 O 1.21282 * 120.00190 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00023 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.47233 * 320.01066 * 8 6 5 10 10 N 1.46897 * 109.47437 * 200.00176 * 8 6 5 11 11 C 1.53005 * 109.46845 * 80.00511 * 8 6 5 12 12 C 1.52993 * 109.47194 * 184.99763 * 11 8 6 13 13 C 1.53005 * 109.47194 * 179.97438 * 12 11 8 14 14 C 1.50703 * 109.47021 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99388 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00651 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99370 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47292 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47021 * 120.00260 * 18 16 14 21 21 H 1.48498 * 109.46923 * 239.99549 * 18 16 14 22 22 C 1.53181 * 109.54019 * 178.31083 * 3 2 1 23 23 C 1.53101 * 109.15743 * 63.06311 * 22 3 2 24 24 O 1.42909 * 109.48693 * 57.47275 * 23 22 3 25 25 C 1.42905 * 114.09708 * 298.88982 * 24 23 22 26 26 C 1.53086 * 109.41653 * 61.15647 * 25 24 23 27 27 H 1.09005 * 109.47009 * 59.62894 * 1 2 3 28 28 H 1.08996 * 109.47256 * 179.62881 * 1 2 3 29 29 H 1.08997 * 109.47223 * 299.63216 * 1 2 3 30 30 H 1.09006 * 109.46905 * 299.53034 * 4 3 2 31 31 H 1.08995 * 109.46981 * 179.53412 * 4 3 2 32 32 H 0.97005 * 119.99949 * 354.83943 * 5 4 3 33 33 H 1.00902 * 111.00106 * 300.00933 * 10 8 6 34 34 H 1.00902 * 110.99804 * 63.95652 * 10 8 6 35 35 H 1.09002 * 109.46829 * 305.00378 * 11 8 6 36 36 H 1.09005 * 109.47079 * 64.99563 * 11 8 6 37 37 H 1.08993 * 109.47603 * 299.99990 * 12 11 8 38 38 H 1.09006 * 109.46941 * 60.00349 * 12 11 8 39 39 H 1.09005 * 109.46674 * 300.00104 * 13 12 11 40 40 H 1.08995 * 109.47155 * 59.99889 * 13 12 11 41 41 H 0.97000 * 120.00138 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.51956 * 182.88275 * 22 3 2 43 43 H 1.08995 * 109.51821 * 303.06427 * 22 3 2 44 44 H 1.08995 * 109.40641 * 297.49406 * 23 22 3 45 45 H 1.08994 * 109.49281 * 177.50661 * 23 22 3 46 46 H 1.09003 * 109.47442 * 301.17148 * 25 24 23 47 47 H 1.08996 * 109.48532 * 181.14616 * 25 24 23 48 48 H 1.08997 * 109.52094 * 182.48566 * 26 25 24 49 49 H 1.09008 * 109.57336 * 62.32790 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5230 2.0827 1.2246 5 7 1.9097 1.3669 2.4429 6 6 1.6771 1.9178 3.6507 7 8 1.1472 3.0059 3.7290 8 6 2.0743 1.1812 4.9040 9 1 1.8536 0.1202 4.7873 10 7 1.3204 1.7156 6.0459 11 6 3.5729 1.3661 5.1508 12 6 4.0006 0.5186 6.3506 13 6 5.4993 0.7030 6.5971 14 6 5.9206 -0.1324 7.7785 15 1 5.1922 -0.7343 8.3015 16 6 7.2358 -0.1274 8.1922 17 7 8.1228 0.6059 7.5557 18 14 7.7579 -1.1623 9.6571 19 1 6.5803 -1.8906 10.1935 20 1 8.7912 -2.1396 9.2296 21 1 8.3177 -0.2799 10.7122 22 6 3.5369 1.1867 0.0426 23 6 4.0213 0.4791 -1.2258 24 8 3.5802 1.2053 -2.3748 25 6 2.1595 1.3061 -2.4914 26 6 1.6004 2.0488 -1.2751 27 1 -0.3633 0.5196 -0.8867 28 1 -0.3633 -1.0276 -0.0067 29 1 -0.3633 0.5081 0.8932 30 1 0.4376 2.1764 1.1872 31 1 1.9735 3.0752 1.2278 32 1 2.3332 0.4964 2.3803 33 1 1.5081 2.6986 6.1749 34 1 0.3315 1.5477 5.9367 35 1 4.1282 1.0515 4.2672 36 1 3.7806 2.4165 5.3554 37 1 3.4453 0.8332 7.2341 38 1 3.7930 -0.5318 6.1459 39 1 6.0543 0.3880 5.7133 40 1 5.7074 1.7532 6.8015 41 1 9.0479 0.6097 7.8470 42 1 3.9783 2.1819 0.0942 43 1 3.8330 0.6100 0.9188 44 1 3.6129 -0.5310 -1.2554 45 1 5.1102 0.4310 -1.2221 46 1 1.7268 0.3067 -2.5376 47 1 1.9071 1.8538 -3.3994 48 1 0.5131 2.0880 -1.3404 49 1 2.0007 3.0624 -1.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578926755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:24 Heat of formation + Delta-G solvation = -175.886131 kcal Electronic energy + Delta-G solvation = -27294.069230 eV Core-core repulsion = 23447.243736 eV Total energy + Delta-G solvation = -3846.825494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68236 -40.66318 -38.36903 -37.15667 -35.81235 -35.22902 -33.47730 -33.11691 -32.22150 -29.81207 -28.72548 -27.80317 -26.48929 -24.72436 -24.27108 -23.23057 -21.75390 -21.35751 -20.83388 -18.50317 -18.42329 -17.79371 -17.68097 -17.02048 -16.93563 -16.57118 -16.47115 -16.37453 -16.25937 -15.86413 -15.57169 -15.32799 -14.90493 -14.55526 -14.29104 -14.07747 -13.84742 -13.63927 -13.62594 -13.44787 -13.22974 -13.08309 -12.84961 -12.51637 -12.49369 -12.34007 -12.23946 -12.18166 -11.64916 -11.53066 -11.38647 -11.37069 -11.21760 -10.95957 -10.77967 -10.51876 -10.44141 -10.19885 -9.69660 -8.16522 -6.26747 1.41524 1.42069 1.46266 1.55633 2.05062 2.43923 2.69767 2.95030 3.16651 3.41971 3.47894 3.52200 3.66371 3.79533 3.97018 4.00149 4.16151 4.25741 4.30483 4.36551 4.39366 4.43096 4.50050 4.52496 4.60549 4.64122 4.69114 4.75932 4.79035 4.85571 4.93176 5.01300 5.03521 5.14129 5.14289 5.26370 5.30681 5.35294 5.61734 5.85286 5.94578 6.02716 6.10523 6.23590 6.31397 6.39126 6.48766 6.91243 7.08758 7.42343 8.95425 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.002708 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.051756 B =10338.829978 C =11493.425347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.381 6.381 3 C 0.113 3.887 4 C 0.097 3.903 5 N -0.709 5.709 6 C 0.486 3.514 7 O -0.583 6.583 8 C 0.087 3.913 9 H 0.121 0.879 10 N -0.818 5.818 11 C -0.094 4.094 12 C -0.084 4.084 13 C 0.022 3.978 14 C -0.538 4.538 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.963 3.037 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.143 4.143 23 C 0.064 3.936 24 O -0.402 6.402 25 C 0.064 3.936 26 C -0.176 4.176 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.414 0.586 33 H 0.346 0.654 34 H 0.349 0.651 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.055 0.945 39 H -0.007 1.007 40 H -0.016 1.016 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.750 -0.723 -21.565 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.300 6.300 3 C 0.073 3.927 4 C -0.027 4.027 5 N -0.361 5.361 6 C 0.272 3.728 7 O -0.464 6.464 8 C -0.028 4.028 9 H 0.139 0.861 10 N -0.347 5.347 11 C -0.132 4.132 12 C -0.121 4.121 13 C -0.015 4.015 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.788 3.212 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.181 4.181 23 C -0.012 4.012 24 O -0.321 6.321 25 C -0.012 4.012 26 C -0.214 4.214 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.011 0.989 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.076 0.924 47 H 0.127 0.873 48 H 0.114 0.886 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.315 -0.526 -21.199 27.376 hybrid contribution 0.001 0.295 0.276 0.404 sum -17.314 -0.231 -20.923 27.159 Atomic orbital electron populations 1.22972 0.80161 1.03921 1.00710 1.87976 1.20898 1.26246 1.94865 1.21681 0.94146 0.83878 0.93012 1.21935 1.00540 0.96225 0.84032 1.45946 1.61967 1.23351 1.04869 1.22426 0.77413 0.86186 0.86823 1.90660 1.45327 1.22547 1.87817 1.21609 0.95402 1.00277 0.85540 0.86127 1.59041 1.13021 1.23270 1.39333 1.21456 0.92120 1.00157 0.99476 1.21279 0.95439 0.98455 0.96955 1.19055 0.92889 0.94597 0.94987 1.21762 0.94290 1.26814 1.14743 0.92242 1.25979 0.96976 0.97011 1.00039 1.70105 1.03095 1.41902 1.42470 0.85431 0.78429 0.78502 0.78886 1.18548 1.20294 1.20605 1.22217 0.92477 1.03136 1.00253 1.22569 1.00377 0.94559 0.83728 1.87915 1.22750 1.76121 1.45292 1.22594 0.80527 1.00218 0.97864 1.22709 1.03266 1.00776 0.94638 0.92338 0.88289 0.94153 0.91032 0.91393 0.74900 0.84090 0.83767 0.90933 0.93544 0.92560 0.92640 0.98889 0.99780 0.92902 0.89772 0.89704 0.92175 0.88062 0.92402 0.87317 0.88564 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 113.37 1.16 1.35 16 2 O -0.38 -5.59 8.98 -148.98 -1.34 -6.93 16 3 C 0.11 1.64 0.36 -10.67 0.00 1.64 16 4 C 0.10 1.72 4.16 86.38 0.36 2.08 16 5 N -0.71 -13.98 5.12 -463.06 -2.37 -16.35 16 6 C 0.49 12.39 7.07 87.66 0.62 13.01 16 7 O -0.58 -18.66 16.24 -3.04 -0.05 -18.71 16 8 C 0.09 2.24 3.15 44.17 0.14 2.38 16 9 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 10 N -0.82 -21.45 8.44 -171.80 -1.45 -22.90 16 11 C -0.09 -3.03 4.84 30.59 0.15 -2.88 16 12 C -0.08 -3.37 5.04 30.59 0.15 -3.22 16 13 C 0.02 1.15 4.97 29.85 0.15 1.30 16 14 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 17 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 18 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 C -0.14 -2.31 4.94 30.69 0.15 -2.16 16 23 C 0.06 1.05 6.69 72.02 0.48 1.53 16 24 O -0.40 -7.36 10.77 -148.98 -1.60 -8.96 16 25 C 0.06 0.83 6.69 72.01 0.48 1.31 16 26 C -0.18 -2.09 4.70 30.68 0.14 -1.95 16 27 H 0.06 0.46 6.38 -2.38 -0.02 0.45 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.49 6.42 -2.39 -0.02 0.47 16 30 H 0.07 1.25 6.56 -2.38 -0.02 1.23 16 31 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 32 H 0.41 7.10 7.36 -92.70 -0.68 6.42 16 33 H 0.35 9.72 8.58 -89.69 -0.77 8.95 16 34 H 0.35 7.73 9.06 -89.69 -0.81 6.92 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.06 2.35 7.75 -2.39 -0.02 2.33 16 38 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 39 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.39 7.12 -2.39 -0.02 1.37 16 44 H 0.06 0.97 7.82 -2.39 -0.02 0.96 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 0.73 7.82 -2.39 -0.02 0.71 16 47 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 0.83 6.43 -2.39 -0.02 0.82 16 49 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -71.48 386.15 -1.13 -72.60 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -1.30 Total: 27.82 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.68 Total: -16.07 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -3.54 Total: -96.55 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -2.99 Total: -34.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.48 -1.13 -72.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578926755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.282 kcal (2) G-P(sol) polarization free energy of solvation -71.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds