Wall clock time and date at job start Tue Mar 31 2020 10:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47477 * 2 1 4 4 C 1.34637 * 117.00235 * 180.02562 * 3 2 1 5 5 O 1.21510 * 119.99569 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00234 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63131 * 179.97438 * 6 4 3 8 8 C 1.53192 * 108.77565 * 233.58669 * 7 6 4 9 9 C 1.53046 * 109.31128 * 305.36180 * 8 7 6 10 10 C 1.52995 * 109.46027 * 181.38838 * 9 8 7 11 11 H 1.08996 * 109.47526 * 59.99740 * 10 9 8 12 12 C 1.53003 * 109.47073 * 299.99664 * 10 9 8 13 13 N 1.46906 * 109.46978 * 180.02562 * 10 9 8 14 14 C 1.46902 * 110.99540 * 205.00067 * 13 10 9 15 15 C 1.53007 * 109.46803 * 179.97438 * 14 13 10 16 16 H 1.08997 * 109.46978 * 59.99718 * 15 14 13 17 17 O 1.42897 * 109.46752 * 299.99631 * 15 14 13 18 18 C 1.50702 * 109.47121 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99536 * 359.97438 * 18 15 14 20 20 C 1.37869 * 119.99752 * 180.02562 * 18 15 14 21 21 N 1.31516 * 120.00244 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 119.99829 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47176 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47075 * 119.99735 * 22 20 18 25 25 H 1.48497 * 109.47308 * 239.99748 * 22 20 18 26 26 C 1.53046 * 109.53579 * 61.36447 * 9 8 7 27 27 C 1.46928 * 120.62932 * 359.97089 * 6 4 3 28 28 H 1.09010 * 109.46795 * 300.00528 * 1 2 3 29 29 H 1.08999 * 109.47148 * 59.99819 * 1 2 3 30 30 H 1.08999 * 109.47609 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46972 * 239.99239 * 2 1 3 32 32 H 1.09007 * 109.47023 * 119.99860 * 2 1 3 33 33 H 1.08996 * 109.58905 * 113.79723 * 7 6 4 34 34 H 1.09008 * 109.58585 * 353.36923 * 7 6 4 35 35 H 1.09002 * 109.49998 * 185.41388 * 8 7 6 36 36 H 1.08995 * 109.50229 * 65.31205 * 8 7 6 37 37 H 1.09000 * 109.45949 * 301.34958 * 9 8 7 38 38 H 1.09002 * 109.46807 * 60.00271 * 12 10 9 39 39 H 1.08998 * 109.46979 * 179.97438 * 12 10 9 40 40 H 1.08992 * 109.47708 * 300.00573 * 12 10 9 41 41 H 1.00903 * 110.99669 * 328.95071 * 13 10 9 42 42 H 1.09000 * 109.46810 * 299.99418 * 14 13 10 43 43 H 1.08997 * 109.47584 * 60.00000 * 14 13 10 44 44 H 0.96701 * 114.00570 * 300.00263 * 17 15 14 45 45 H 0.97001 * 119.99658 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49519 * 58.58791 * 26 9 8 47 47 H 1.08996 * 109.49601 * 178.68448 * 26 9 8 48 48 H 1.09000 * 109.58351 * 246.20638 * 27 6 4 49 49 H 1.08999 * 109.58293 * 6.62848 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3489 1.5453 -0.0005 5 8 4.0890 0.5816 -0.0005 6 7 3.8641 2.7907 -0.0011 7 6 5.3184 2.9991 -0.0011 8 6 5.6843 3.9219 1.1657 9 6 4.8646 5.2106 1.0680 10 6 5.2524 6.1493 2.2122 11 1 6.3138 6.3875 2.1430 12 6 4.9696 5.4652 3.5512 13 7 4.4653 7.3862 2.1190 14 6 5.1640 8.5047 2.7662 15 6 4.3156 9.7726 2.6483 16 1 3.3543 9.6132 3.1367 17 8 4.1041 10.0775 1.2684 18 6 5.0320 10.9199 3.3128 19 1 5.9958 10.7606 3.7734 20 6 4.4566 12.1726 3.3335 21 7 3.2827 12.3664 2.7730 22 14 5.3442 13.5947 4.1577 23 1 6.6380 13.1178 4.7090 24 1 5.5954 14.6661 3.1606 25 1 4.5048 14.1305 5.2592 26 6 3.3740 4.8776 1.1645 27 6 2.9820 3.9657 -0.0018 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 5.6214 3.4607 -0.9409 34 1 5.8249 2.0412 0.1179 35 1 6.7465 4.1621 1.1204 36 1 5.4639 3.4212 2.1085 37 1 5.0667 5.6981 0.1143 38 1 5.5533 4.5472 3.6206 39 1 5.2463 6.1338 4.3664 40 1 3.9083 5.2269 3.6206 41 1 4.2463 7.6039 1.1584 42 1 5.3257 8.2718 3.8187 43 1 6.1251 8.6644 2.2775 44 1 4.9185 10.2318 0.7703 45 1 2.8781 13.2479 2.7872 46 1 3.1754 4.3679 2.1073 47 1 2.7919 5.7980 1.1183 48 1 3.0941 4.5061 -0.9417 49 1 1.9468 3.6455 0.1168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647450435.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:26 Heat of formation + Delta-G solvation = -144.393581 kcal Electronic energy + Delta-G solvation = -27087.190031 eV Core-core repulsion = 23241.730156 eV Total energy + Delta-G solvation = -3845.459875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86152 -39.10840 -37.13179 -36.34304 -35.20714 -32.76617 -32.11628 -31.77755 -31.19161 -29.50525 -27.56497 -25.85101 -24.38540 -23.52570 -23.30685 -22.05513 -20.59801 -20.40795 -19.29667 -18.10310 -17.16623 -16.91786 -16.85485 -15.68943 -15.19597 -15.00176 -14.87334 -14.58344 -14.49510 -14.20868 -14.02423 -13.75981 -13.52254 -13.34320 -13.09149 -12.87157 -12.56058 -12.28046 -12.25032 -12.00909 -11.97118 -11.89066 -11.84267 -11.21518 -11.04391 -10.97693 -10.88754 -10.80841 -10.77142 -10.67526 -10.54081 -10.48084 -10.18047 -10.01132 -9.01875 -8.93541 -8.57987 -8.17659 -7.77810 -6.01155 -4.19235 1.92659 2.63369 3.25890 3.34270 3.37395 3.62910 4.34359 4.51472 4.59773 4.63170 4.66745 4.69555 4.88139 4.97182 5.00806 5.10019 5.15081 5.26169 5.27570 5.34214 5.45613 5.47617 5.54257 5.57763 5.65323 5.68450 5.78560 5.82047 5.85861 5.97654 6.10115 6.14322 6.20139 6.21361 6.26120 6.32346 6.38452 6.45145 6.59104 6.90565 7.13904 7.56759 7.76455 7.87110 8.01612 8.08722 8.23589 8.84632 9.37245 9.57889 11.03077 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002331 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.775789 B =12010.985520 C =12511.556189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.651 3.349 5 O -0.581 6.581 6 N -0.591 5.591 7 C 0.128 3.872 8 C -0.131 4.131 9 C -0.087 4.087 10 C 0.087 3.913 11 H 0.037 0.963 12 C -0.141 4.141 13 N -0.680 5.680 14 C 0.037 3.963 15 C 0.231 3.769 16 H 0.063 0.937 17 O -0.565 6.565 18 C -0.572 4.572 19 H 0.054 0.946 20 C 0.079 3.921 21 N -0.858 5.858 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.125 4.125 27 C 0.109 3.891 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.342 0.658 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.340 0.660 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -22.255 -6.464 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.283 6.283 4 C 0.405 3.595 5 O -0.470 6.470 6 N -0.331 5.331 7 C 0.007 3.993 8 C -0.169 4.169 9 C -0.106 4.106 10 C -0.023 4.023 11 H 0.054 0.946 12 C -0.199 4.199 13 N -0.313 5.313 14 C -0.092 4.092 15 C 0.174 3.826 16 H 0.081 0.919 17 O -0.367 6.367 18 C -0.610 4.610 19 H 0.073 0.927 20 C -0.127 4.127 21 N -0.494 5.494 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.163 4.163 27 C -0.013 4.013 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.161 0.839 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.183 0.817 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.111 0.889 48 H 0.089 0.911 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.916 -22.695 -5.766 23.495 hybrid contribution 1.870 1.099 -0.191 2.177 sum -0.047 -21.596 -5.958 22.403 Atomic orbital electron populations 1.21831 0.92511 1.03024 1.03683 1.22936 0.94848 0.78852 1.02631 1.86245 1.22122 1.32973 1.86965 1.17998 0.81141 0.84072 0.76281 1.90968 1.59878 1.39513 1.56689 1.46981 1.07544 1.03115 1.75471 1.21662 0.77636 1.01146 0.98881 1.22057 1.00306 0.95770 0.98791 1.21309 0.95394 0.95125 0.98792 1.21487 0.95300 0.90857 0.94646 0.94551 1.21877 1.01944 0.99143 0.96914 1.60558 1.45651 1.02519 1.22544 1.22865 0.95504 0.92544 0.98262 1.19423 0.95369 0.87640 0.80195 0.91909 1.86586 1.33846 1.92812 1.23443 1.21671 1.05649 0.94732 1.38991 0.92731 1.25036 0.94554 0.98818 0.94320 1.70093 1.15310 1.22350 1.41614 0.86628 0.79920 0.82530 0.79344 1.19777 1.20919 1.20863 1.21961 0.96232 1.00188 0.97921 1.21866 0.94143 0.85745 0.99567 0.91346 0.91428 0.90055 0.91321 0.91272 0.91057 0.88793 0.90412 0.90827 0.91132 0.93224 0.92841 0.91949 0.83872 0.91827 0.96692 0.81678 0.93069 0.91126 0.88858 0.91133 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.08 0.70 6.19 37.16 0.23 0.93 16 3 O -0.37 -4.11 8.86 -40.32 -0.36 -4.47 16 4 C 0.65 8.28 8.43 54.05 0.46 8.74 16 5 O -0.58 -8.81 15.54 -19.28 -0.30 -9.11 16 6 N -0.59 -6.46 2.97 -178.59 -0.53 -6.99 16 7 C 0.13 1.24 6.43 -3.71 -0.02 1.22 16 8 C -0.13 -1.23 4.96 -26.61 -0.13 -1.36 16 9 C -0.09 -0.93 1.83 -90.57 -0.17 -1.10 16 10 C 0.09 1.15 2.44 -67.71 -0.17 0.99 16 11 H 0.04 0.51 7.80 -51.93 -0.41 0.10 16 12 C -0.14 -1.82 8.71 37.16 0.32 -1.50 16 13 N -0.68 -11.22 5.57 -106.72 -0.59 -11.81 16 14 C 0.04 0.74 5.13 -3.82 -0.02 0.72 16 15 C 0.23 5.73 3.10 -27.88 -0.09 5.64 16 16 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 17 O -0.56 -13.93 12.07 -35.23 -0.43 -14.36 16 18 C -0.57 -15.54 8.76 -34.44 -0.30 -15.84 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 21 N -0.86 -25.23 12.84 55.43 0.71 -24.52 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C -0.12 -1.33 4.82 -26.63 -0.13 -1.46 16 27 C 0.11 1.06 6.44 -3.73 -0.02 1.04 16 28 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.98 7.00 -51.92 -0.36 0.62 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 37 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 38 H 0.05 0.55 6.46 -51.93 -0.34 0.22 16 39 H 0.05 0.76 7.45 -51.93 -0.39 0.37 16 40 H 0.06 0.82 6.46 -51.93 -0.34 0.49 16 41 H 0.34 5.64 7.57 -39.29 -0.30 5.34 16 42 H 0.06 1.29 7.44 -51.93 -0.39 0.90 16 43 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 44 H 0.34 7.44 9.04 45.56 0.41 7.85 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 47 H 0.09 1.11 7.44 -51.93 -0.39 0.72 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.87 6.93 -51.93 -0.36 0.51 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -31.86 383.77 -8.19 -40.05 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.71 Total: 9.80 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 0.25 Total: -0.40 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.41 Total: -43.32 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.08 Total: -27.93 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.86 -8.19 -40.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647450435.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.344 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds