Wall clock time and date at job start Tue Mar 31 2020 10:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47477 * 2 1 4 4 C 1.34637 * 117.00235 * 180.02562 * 3 2 1 5 5 O 1.21510 * 119.99569 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00234 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63131 * 179.97438 * 6 4 3 8 8 C 1.53192 * 108.77565 * 233.58669 * 7 6 4 9 9 C 1.53046 * 109.31128 * 305.36180 * 8 7 6 10 10 C 1.52995 * 109.46027 * 181.38838 * 9 8 7 11 11 H 1.08996 * 109.47526 * 59.99740 * 10 9 8 12 12 C 1.53003 * 109.47073 * 299.99664 * 10 9 8 13 13 N 1.46906 * 109.46978 * 180.02562 * 10 9 8 14 14 C 1.46902 * 110.99540 * 205.00067 * 13 10 9 15 15 C 1.53007 * 109.46803 * 179.97438 * 14 13 10 16 16 H 1.08997 * 109.46978 * 59.99718 * 15 14 13 17 17 O 1.42897 * 109.46752 * 299.99631 * 15 14 13 18 18 C 1.50702 * 109.47121 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99536 * 359.97438 * 18 15 14 20 20 C 1.37869 * 119.99752 * 180.02562 * 18 15 14 21 21 N 1.31516 * 120.00244 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 119.99829 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47176 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47075 * 119.99735 * 22 20 18 25 25 H 1.48497 * 109.47308 * 239.99748 * 22 20 18 26 26 C 1.53046 * 109.53579 * 61.36447 * 9 8 7 27 27 C 1.46928 * 120.62932 * 359.97089 * 6 4 3 28 28 H 1.09010 * 109.46795 * 300.00528 * 1 2 3 29 29 H 1.08999 * 109.47148 * 59.99819 * 1 2 3 30 30 H 1.08999 * 109.47609 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46972 * 239.99239 * 2 1 3 32 32 H 1.09007 * 109.47023 * 119.99860 * 2 1 3 33 33 H 1.08996 * 109.58905 * 113.79723 * 7 6 4 34 34 H 1.09008 * 109.58585 * 353.36923 * 7 6 4 35 35 H 1.09002 * 109.49998 * 185.41388 * 8 7 6 36 36 H 1.08995 * 109.50229 * 65.31205 * 8 7 6 37 37 H 1.09000 * 109.45949 * 301.34958 * 9 8 7 38 38 H 1.09002 * 109.46807 * 60.00271 * 12 10 9 39 39 H 1.08998 * 109.46979 * 179.97438 * 12 10 9 40 40 H 1.08992 * 109.47708 * 300.00573 * 12 10 9 41 41 H 1.00903 * 110.99669 * 328.95071 * 13 10 9 42 42 H 1.09000 * 109.46810 * 299.99418 * 14 13 10 43 43 H 1.08997 * 109.47584 * 60.00000 * 14 13 10 44 44 H 0.96701 * 114.00570 * 300.00263 * 17 15 14 45 45 H 0.97001 * 119.99658 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49519 * 58.58791 * 26 9 8 47 47 H 1.08996 * 109.49601 * 178.68448 * 26 9 8 48 48 H 1.09000 * 109.58351 * 246.20638 * 27 6 4 49 49 H 1.08999 * 109.58293 * 6.62848 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3489 1.5453 -0.0005 5 8 4.0890 0.5816 -0.0005 6 7 3.8641 2.7907 -0.0011 7 6 5.3184 2.9991 -0.0011 8 6 5.6843 3.9219 1.1657 9 6 4.8646 5.2106 1.0680 10 6 5.2524 6.1493 2.2122 11 1 6.3138 6.3875 2.1430 12 6 4.9696 5.4652 3.5512 13 7 4.4653 7.3862 2.1190 14 6 5.1640 8.5047 2.7662 15 6 4.3156 9.7726 2.6483 16 1 3.3543 9.6132 3.1367 17 8 4.1041 10.0775 1.2684 18 6 5.0320 10.9199 3.3128 19 1 5.9958 10.7606 3.7734 20 6 4.4566 12.1726 3.3335 21 7 3.2827 12.3664 2.7730 22 14 5.3442 13.5947 4.1577 23 1 6.6380 13.1178 4.7090 24 1 5.5954 14.6661 3.1606 25 1 4.5048 14.1305 5.2592 26 6 3.3740 4.8776 1.1645 27 6 2.9820 3.9657 -0.0018 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 5.6214 3.4607 -0.9409 34 1 5.8249 2.0412 0.1179 35 1 6.7465 4.1621 1.1204 36 1 5.4639 3.4212 2.1085 37 1 5.0667 5.6981 0.1143 38 1 5.5533 4.5472 3.6206 39 1 5.2463 6.1338 4.3664 40 1 3.9083 5.2269 3.6206 41 1 4.2463 7.6039 1.1584 42 1 5.3257 8.2718 3.8187 43 1 6.1251 8.6644 2.2775 44 1 4.9185 10.2318 0.7703 45 1 2.8781 13.2479 2.7872 46 1 3.1754 4.3679 2.1073 47 1 2.7919 5.7980 1.1183 48 1 3.0941 4.5061 -0.9417 49 1 1.9468 3.6455 0.1168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647450435.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:25 Heat of formation + Delta-G solvation = -167.079813 kcal Electronic energy + Delta-G solvation = -27088.173780 eV Core-core repulsion = 23241.730156 eV Total energy + Delta-G solvation = -3846.443624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76170 -40.06982 -38.41091 -37.58413 -36.57397 -34.26746 -33.85958 -32.53996 -31.98766 -30.76569 -29.24274 -26.93313 -25.89936 -24.46469 -24.08187 -23.03273 -22.23570 -21.47779 -20.23665 -19.02434 -18.94626 -18.06533 -17.69972 -17.03590 -16.63495 -16.37600 -15.95573 -15.79053 -15.69164 -15.60577 -15.22046 -14.72973 -14.60365 -14.48860 -14.29842 -13.77155 -13.58882 -13.42727 -13.27934 -13.12481 -13.00797 -12.85942 -12.84552 -12.82817 -12.65348 -12.50472 -12.42931 -12.03850 -11.84923 -11.73730 -11.54874 -11.51662 -11.39169 -11.13125 -10.97019 -10.70074 -10.11660 -9.80328 -9.15147 -8.12446 -6.37823 1.11936 1.39819 1.41566 1.53170 1.67788 2.39276 2.84258 3.13371 3.33344 3.73502 3.78158 3.96117 4.03012 4.10053 4.13599 4.24001 4.33324 4.35407 4.35701 4.46530 4.48526 4.55545 4.61694 4.65189 4.71870 4.79061 4.83132 4.90322 4.92454 4.93734 4.98076 5.08456 5.13679 5.15567 5.18922 5.30251 5.32717 5.40756 5.53040 5.59113 5.65044 5.78296 6.06576 6.24344 6.32247 6.66641 6.78254 7.16658 7.35299 7.58122 8.92074 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002331 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.775789 B =12010.985520 C =12511.556189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.373 6.373 4 C 0.645 3.355 5 O -0.611 6.611 6 N -0.589 5.589 7 C 0.127 3.873 8 C -0.122 4.122 9 C -0.079 4.079 10 C 0.089 3.911 11 H 0.039 0.961 12 C -0.138 4.138 13 N -0.684 5.684 14 C 0.058 3.942 15 C 0.233 3.767 16 H 0.021 0.979 17 O -0.576 6.576 18 C -0.586 4.586 19 H 0.057 0.943 20 C 0.025 3.975 21 N -0.898 5.898 22 Si 0.959 3.041 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.280 1.280 26 C -0.118 4.118 27 C 0.114 3.886 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.343 0.657 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.353 0.647 45 H 0.261 0.739 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -22.724 -6.875 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.287 6.287 4 C 0.400 3.600 5 O -0.503 6.503 6 N -0.329 5.329 7 C 0.006 3.994 8 C -0.160 4.160 9 C -0.098 4.098 10 C -0.021 4.021 11 H 0.057 0.943 12 C -0.196 4.196 13 N -0.316 5.316 14 C -0.071 4.071 15 C 0.176 3.824 16 H 0.039 0.961 17 O -0.379 6.379 18 C -0.624 4.624 19 H 0.075 0.925 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.784 3.216 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.206 1.206 26 C -0.157 4.157 27 C -0.008 4.008 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.163 0.837 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.198 0.802 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.975 -23.168 -6.178 23.997 hybrid contribution 1.538 1.188 -0.076 1.944 sum 0.563 -21.980 -6.254 22.859 Atomic orbital electron populations 1.21843 0.90303 1.04494 1.03648 1.23206 0.96524 0.77783 1.02498 1.86262 1.21262 1.34482 1.86672 1.18217 0.81451 0.84246 0.76101 1.90940 1.60615 1.40533 1.58220 1.47127 1.08226 1.02843 1.74665 1.21755 0.76899 1.00918 0.99788 1.21984 1.00978 0.94681 0.98372 1.21235 0.95421 0.95170 0.97960 1.21547 0.94891 0.89735 0.95892 0.94349 1.21856 1.01944 0.99631 0.96130 1.60474 1.46088 1.02598 1.22469 1.22411 0.94780 0.91528 0.98390 1.19207 0.93877 0.89524 0.79835 0.96081 1.86518 1.34947 1.93081 1.23363 1.22068 1.05777 0.95715 1.38837 0.92468 1.25891 0.95241 1.01698 0.94921 1.70224 1.16968 1.23052 1.43293 0.85527 0.78872 0.79006 0.78239 1.18840 1.20425 1.20620 1.21859 0.96193 0.99653 0.97963 1.21870 0.94067 0.85155 0.99706 0.91513 0.91245 0.87820 0.91321 0.91615 0.89291 0.89557 0.88774 0.91522 0.90287 0.91130 0.94487 0.92523 0.83732 0.92439 0.96069 0.80232 0.93032 0.92033 0.90098 0.89708 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.07 1.21 6.19 71.98 0.45 1.66 16 3 O -0.37 -8.07 8.86 -55.46 -0.49 -8.57 16 4 C 0.64 15.98 8.43 129.79 1.09 17.08 16 5 O -0.61 -18.37 15.54 19.81 0.31 -18.06 16 6 N -0.59 -12.06 2.97 -949.34 -2.82 -14.89 16 7 C 0.13 2.22 6.43 86.36 0.56 2.77 16 8 C -0.12 -2.01 4.96 30.67 0.15 -1.86 16 9 C -0.08 -1.52 1.83 -10.76 -0.02 -1.54 16 10 C 0.09 2.21 2.44 44.91 0.11 2.32 16 11 H 0.04 0.98 7.80 -2.39 -0.02 0.96 16 12 C -0.14 -3.41 8.71 71.98 0.63 -2.78 16 13 N -0.68 -22.12 5.57 -491.55 -2.74 -24.85 16 14 C 0.06 2.30 5.13 86.31 0.44 2.74 16 15 C 0.23 11.71 3.10 29.85 0.09 11.81 16 16 H 0.02 1.23 8.14 -2.39 -0.02 1.22 16 17 O -0.58 -28.53 12.07 -148.98 -1.80 -30.33 16 18 C -0.59 -31.86 8.76 25.60 0.22 -31.64 16 19 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 20 C 0.02 1.39 5.40 84.65 0.46 1.84 16 21 N -0.90 -53.46 12.84 21.44 0.28 -53.19 16 22 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 C -0.12 -2.39 4.82 30.66 0.15 -2.24 16 27 C 0.11 2.04 6.44 86.35 0.56 2.60 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.69 7.00 -2.38 -0.02 1.68 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.22 6.51 -2.39 -0.02 1.21 16 37 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 38 H 0.07 1.44 6.46 -2.39 -0.02 1.43 16 39 H 0.04 1.02 7.45 -2.39 -0.02 1.01 16 40 H 0.06 1.46 6.46 -2.39 -0.02 1.44 16 41 H 0.34 11.03 7.57 -89.69 -0.68 10.35 16 42 H 0.06 2.32 7.44 -2.39 -0.02 2.30 16 43 H 0.02 0.81 8.06 -2.39 -0.02 0.79 16 44 H 0.35 15.31 9.04 -74.06 -0.67 14.64 16 45 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.06 1.36 6.51 -2.39 -0.02 1.35 16 47 H 0.08 1.87 7.44 -2.39 -0.02 1.85 16 48 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.09 1.66 6.93 -2.39 -0.02 1.64 16 Total: -1.00 -68.55 383.77 -0.01 -68.56 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.40 Total: 34.19 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.63 Total: 2.00 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -5.28 Total: -92.92 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.98 Total: -56.96 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.55 -0.01 -68.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647450435.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.515 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds