Wall clock time and date at job start Tue Mar 31 2020 11:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36658 * 120.11723 * 2 1 4 4 C 1.38785 * 120.53026 * 180.02562 * 3 2 1 5 5 C 1.37793 * 120.66527 * 359.97438 * 4 3 2 6 6 C 1.39080 * 119.77776 * 0.02562 * 5 4 3 7 7 N 1.37692 * 133.51259 * 179.97438 * 6 5 4 8 8 H 0.96996 * 125.06708 * 0.02562 * 7 6 5 9 9 C 1.36840 * 109.87131 * 180.02562 * 7 6 5 10 10 C 1.50704 * 125.02783 * 180.02562 * 9 7 6 11 11 N 1.46895 * 109.47175 * 85.04760 * 10 9 7 12 12 C 1.46897 * 111.00056 * 164.27895 * 11 10 9 13 13 C 1.50704 * 109.47164 * 190.00040 * 12 11 10 14 14 H 1.07996 * 119.99859 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99958 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99941 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99755 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47116 * 90.00043 * 17 15 13 19 19 H 1.48503 * 109.46699 * 210.00223 * 17 15 13 20 20 H 1.48491 * 109.47195 * 329.99733 * 17 15 13 21 21 C 1.46907 * 110.99969 * 288.23043 * 11 10 9 22 22 C 1.53006 * 109.46658 * 297.97028 * 21 11 10 23 23 C 1.53004 * 109.46565 * 183.98534 * 22 21 11 24 24 C 1.53006 * 109.47052 * 175.00170 * 23 22 21 25 25 C 1.52996 * 109.47311 * 294.99648 * 23 22 21 26 26 C 1.34228 * 109.93732 * 0.26526 * 9 7 6 27 27 C 1.39583 * 120.11806 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46923 * 90.00191 * 1 2 3 29 29 H 1.09001 * 109.47261 * 210.00258 * 1 2 3 30 30 H 1.08998 * 109.47262 * 329.99956 * 1 2 3 31 31 H 1.08004 * 119.73498 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.66949 * 179.97438 * 4 3 2 33 33 H 1.08007 * 120.11025 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46967 * 325.04252 * 10 9 7 35 35 H 1.09001 * 109.46715 * 205.04900 * 10 9 7 36 36 H 1.08998 * 109.47080 * 309.99617 * 12 11 10 37 37 H 1.08999 * 109.47483 * 69.99395 * 12 11 10 38 38 H 0.97004 * 119.99614 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47274 * 57.97022 * 21 11 10 40 40 H 1.09000 * 109.47282 * 177.97183 * 21 11 10 41 41 H 1.09003 * 109.46951 * 303.97720 * 22 21 11 42 42 H 1.08992 * 109.47538 * 63.98367 * 22 21 11 43 43 H 1.08999 * 109.47507 * 54.99678 * 23 22 21 44 44 H 1.08996 * 109.46868 * 59.99310 * 24 23 22 45 45 H 1.08998 * 109.47102 * 179.97438 * 24 23 22 46 46 H 1.09006 * 109.46504 * 299.99621 * 24 23 22 47 47 H 1.08998 * 109.47770 * 180.02562 * 25 23 22 48 48 H 1.09004 * 109.47332 * 300.00950 * 25 23 22 49 49 H 1.09001 * 109.46957 * 59.99850 * 25 23 22 50 50 H 1.08005 * 126.49791 * 179.70925 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5805 1.1921 -0.0005 5 6 4.2918 0.0120 -0.0005 6 6 3.6145 -1.2028 -0.0006 7 7 4.0249 -2.5171 -0.0010 8 1 4.9489 -2.8124 -0.0011 9 6 2.9352 -3.3447 -0.0013 10 6 2.9927 -4.8506 -0.0013 11 7 3.1304 -5.3354 1.3785 12 6 2.8195 -6.7684 1.4665 13 6 2.7305 -7.1750 2.9149 14 1 2.8894 -6.4423 3.6922 15 6 2.4461 -8.4825 3.2477 16 7 2.3689 -8.8375 4.5117 17 14 2.1705 -9.7497 1.9031 18 1 3.4655 -10.3830 1.5468 19 1 1.2279 -10.7894 2.3885 20 1 1.5989 -9.0839 0.7051 21 6 4.4735 -5.0549 1.9034 22 6 5.5149 -5.7951 1.0615 23 6 6.9040 -5.5836 1.6671 24 6 7.9278 -6.4231 0.9003 25 6 7.2826 -4.1044 1.5706 26 6 1.8075 -2.6166 -0.0070 27 6 2.2074 -1.2074 -0.0005 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6503 2.1160 -0.0004 32 1 4.1083 2.1344 -0.0009 33 1 5.3717 0.0302 -0.0005 34 1 3.8484 -5.1815 -0.5899 35 1 2.0763 -5.2492 -0.4367 36 1 1.8666 -6.9643 0.9750 37 1 3.6060 -7.3417 0.9758 38 1 2.1692 -9.7574 4.7457 39 1 4.6649 -3.9828 1.8579 40 1 4.5369 -5.3917 2.9381 41 1 5.2821 -6.8599 1.0494 42 1 5.5000 -5.4083 0.0426 43 1 6.8945 -5.8886 2.7135 44 1 7.9372 -6.1181 -0.1460 45 1 8.9175 -6.2721 1.3314 46 1 7.6580 -7.4770 0.9692 47 1 8.2724 -3.9537 2.0015 48 1 7.2921 -3.7992 0.5241 49 1 6.5532 -3.5062 2.1167 50 1 0.7969 -2.9976 -0.0130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663716955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:59 Heat of formation + Delta-G solvation = 41.688043 kcal Electronic energy + Delta-G solvation = -26638.674064 eV Core-core repulsion = 23244.425308 eV Total energy + Delta-G solvation = -3394.248756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19337 -38.28592 -36.91477 -35.26179 -32.99102 -32.51393 -30.20298 -29.82614 -28.78820 -27.57597 -27.09989 -26.35372 -24.77693 -23.09414 -21.77223 -20.97687 -20.24960 -20.09492 -19.16927 -17.08697 -16.77301 -16.09159 -15.54395 -15.19005 -14.93412 -14.76137 -14.38799 -14.14482 -14.05344 -13.58496 -13.44977 -13.19540 -13.02492 -12.78668 -12.75062 -12.48277 -12.38980 -12.22588 -12.12000 -11.80379 -11.55145 -11.48567 -11.22767 -11.14388 -10.92188 -10.81032 -10.74731 -10.66685 -10.46300 -10.31081 -10.00487 -9.87215 -9.37540 -9.30037 -8.60644 -8.01953 -7.47740 -7.37063 -6.07866 -4.05151 1.22861 1.75632 2.90305 3.24094 3.26942 3.33109 3.33502 3.99267 4.38240 4.74673 4.79109 4.92002 5.00571 5.01524 5.07612 5.16291 5.23540 5.26189 5.32743 5.40908 5.47540 5.55243 5.63944 5.66506 5.71616 5.71854 5.79576 5.82620 5.86141 5.89131 5.94690 5.99286 6.06647 6.08547 6.16683 6.19993 6.27127 6.34185 6.43275 6.51417 6.56636 6.71976 6.75022 6.88592 6.93188 6.95495 7.05142 7.34070 7.53299 7.68488 7.81402 7.94846 8.60959 9.01229 9.53304 11.05260 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.003998 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.263894 B = 7001.344726 C = 8645.439518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.039 4.039 3 C -0.156 4.156 4 C -0.103 4.103 5 C -0.137 4.137 6 C 0.099 3.901 7 N -0.591 5.591 8 H 0.410 0.590 9 C 0.109 3.891 10 C 0.101 3.899 11 N -0.516 5.516 12 C 0.159 3.841 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.872 3.128 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.062 3.938 22 C -0.154 4.154 23 C -0.093 4.093 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.191 4.191 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.029 0.971 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 15.177 -11.493 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.039 4.039 3 C -0.175 4.175 4 C -0.122 4.122 5 C -0.158 4.158 6 C -0.009 4.009 7 N -0.194 5.194 8 H 0.247 0.753 9 C 0.001 3.999 10 C -0.028 4.028 11 N -0.238 5.238 12 C 0.033 3.967 13 C -0.544 4.544 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.699 3.301 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.067 4.067 22 C -0.193 4.193 23 C -0.112 4.112 24 C -0.203 4.203 25 C -0.205 4.205 26 C -0.216 4.216 27 C -0.106 4.106 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.008 15.167 -11.075 19.436 hybrid contribution 0.991 -1.400 -1.057 2.015 sum 5.999 13.767 -12.132 19.306 Atomic orbital electron populations 1.20744 0.91456 1.02713 1.02006 1.19057 0.95540 0.91231 0.98112 1.20425 0.94043 0.97019 1.06047 1.20668 0.94016 0.96695 1.00840 1.19952 0.98855 0.89694 1.07276 1.18201 0.93890 0.84860 1.03915 1.41883 1.08328 1.03862 1.65336 0.75319 1.20349 0.85911 0.92523 1.01079 1.20835 1.02092 0.87158 0.92673 1.62224 1.26021 1.19807 1.15780 1.20279 0.95061 0.82517 0.98821 1.20972 1.47827 0.95180 0.90449 0.90163 1.24873 0.95051 0.98134 0.95105 1.69889 1.49470 1.18218 1.16217 0.86915 0.78407 0.81863 0.82867 1.20422 1.21145 1.19154 1.22188 0.86088 0.97853 1.00529 1.22322 0.95115 1.02972 0.98915 1.21040 0.94684 0.94883 1.00613 1.21835 0.98506 1.00189 0.99740 1.21902 1.01120 0.96582 1.00890 1.21364 0.97677 0.89927 1.12634 1.19055 0.91835 0.93310 1.06428 0.91422 0.91240 0.91861 0.86529 0.86240 0.86763 0.94121 0.88836 0.95326 0.99107 0.92663 0.92715 0.89239 0.90541 0.93315 0.90678 0.93293 0.93117 0.92614 0.92967 0.93516 0.92449 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.95 36.01 0.36 -0.84 16 2 C -0.04 -0.51 5.87 -104.69 -0.61 -1.13 16 3 C -0.16 -1.83 9.62 -39.95 -0.38 -2.21 16 4 C -0.10 -1.16 10.01 -39.54 -0.40 -1.56 16 5 C -0.14 -1.68 10.08 -39.43 -0.40 -2.08 16 6 C 0.10 1.42 7.28 -83.99 -0.61 0.80 16 7 N -0.59 -8.16 5.27 -6.95 -0.04 -8.20 16 8 H 0.41 4.92 8.58 -40.82 -0.35 4.57 16 9 C 0.11 1.68 6.01 -81.77 -0.49 1.19 16 10 C 0.10 1.63 5.34 -4.98 -0.03 1.60 16 11 N -0.52 -10.10 4.65 -237.51 -1.10 -11.20 16 12 C 0.16 3.62 3.58 -4.98 -0.02 3.60 16 13 C -0.51 -13.82 9.04 -34.44 -0.31 -14.13 16 14 H 0.08 2.42 7.35 -52.49 -0.39 2.04 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 17 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 21 C 0.06 1.10 4.67 -3.82 -0.02 1.08 16 22 C -0.15 -2.39 4.04 -26.73 -0.11 -2.50 16 23 C -0.09 -1.25 2.92 -90.62 -0.26 -1.52 16 24 C -0.15 -1.76 9.19 37.16 0.34 -1.41 16 25 C -0.15 -1.68 8.95 37.16 0.33 -1.35 16 26 C -0.19 -2.96 10.64 -37.67 -0.40 -3.36 16 27 C -0.10 -1.52 6.14 -105.14 -0.65 -2.17 16 28 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 30 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.04 0.61 5.92 -51.93 -0.31 0.30 16 35 H 0.09 1.46 7.81 -51.93 -0.41 1.06 16 36 H 0.03 0.67 6.92 -51.93 -0.36 0.31 16 37 H -0.01 -0.19 5.41 -51.93 -0.28 -0.47 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.05 0.89 5.02 -51.93 -0.26 0.63 16 40 H 0.09 1.87 6.81 -51.93 -0.35 1.51 16 41 H 0.08 1.39 6.13 -51.93 -0.32 1.07 16 42 H 0.05 0.68 6.41 -51.93 -0.33 0.35 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.68 6.65 -51.93 -0.35 0.34 16 50 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -30.15 387.46 -11.30 -41.45 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.35 Total: 6.26 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -3.75 Total: -24.11 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.37 Total: -45.65 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.15 -11.30 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663716955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.137 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds