Wall clock time and date at job start Tue Mar 31 2020 11:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36658 * 120.11723 * 2 1 4 4 C 1.38785 * 120.53026 * 180.02562 * 3 2 1 5 5 C 1.37793 * 120.66527 * 359.97438 * 4 3 2 6 6 C 1.39080 * 119.77776 * 0.02562 * 5 4 3 7 7 N 1.37692 * 133.51259 * 179.97438 * 6 5 4 8 8 H 0.96996 * 125.06708 * 0.02562 * 7 6 5 9 9 C 1.36840 * 109.87131 * 180.02562 * 7 6 5 10 10 C 1.50704 * 125.02783 * 180.02562 * 9 7 6 11 11 N 1.46895 * 109.47175 * 85.04760 * 10 9 7 12 12 C 1.46897 * 111.00056 * 164.27895 * 11 10 9 13 13 C 1.50704 * 109.47164 * 190.00040 * 12 11 10 14 14 H 1.07996 * 119.99859 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99958 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99941 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99755 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47116 * 90.00043 * 17 15 13 19 19 H 1.48503 * 109.46699 * 210.00223 * 17 15 13 20 20 H 1.48491 * 109.47195 * 329.99733 * 17 15 13 21 21 C 1.46907 * 110.99969 * 288.23043 * 11 10 9 22 22 C 1.53006 * 109.46658 * 297.97028 * 21 11 10 23 23 C 1.53004 * 109.46565 * 183.98534 * 22 21 11 24 24 C 1.53006 * 109.47052 * 175.00170 * 23 22 21 25 25 C 1.52996 * 109.47311 * 294.99648 * 23 22 21 26 26 C 1.34228 * 109.93732 * 0.26526 * 9 7 6 27 27 C 1.39583 * 120.11806 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46923 * 90.00191 * 1 2 3 29 29 H 1.09001 * 109.47261 * 210.00258 * 1 2 3 30 30 H 1.08998 * 109.47262 * 329.99956 * 1 2 3 31 31 H 1.08004 * 119.73498 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.66949 * 179.97438 * 4 3 2 33 33 H 1.08007 * 120.11025 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46967 * 325.04252 * 10 9 7 35 35 H 1.09001 * 109.46715 * 205.04900 * 10 9 7 36 36 H 1.08998 * 109.47080 * 309.99617 * 12 11 10 37 37 H 1.08999 * 109.47483 * 69.99395 * 12 11 10 38 38 H 0.97004 * 119.99614 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47274 * 57.97022 * 21 11 10 40 40 H 1.09000 * 109.47282 * 177.97183 * 21 11 10 41 41 H 1.09003 * 109.46951 * 303.97720 * 22 21 11 42 42 H 1.08992 * 109.47538 * 63.98367 * 22 21 11 43 43 H 1.08999 * 109.47507 * 54.99678 * 23 22 21 44 44 H 1.08996 * 109.46868 * 59.99310 * 24 23 22 45 45 H 1.08998 * 109.47102 * 179.97438 * 24 23 22 46 46 H 1.09006 * 109.46504 * 299.99621 * 24 23 22 47 47 H 1.08998 * 109.47770 * 180.02562 * 25 23 22 48 48 H 1.09004 * 109.47332 * 300.00950 * 25 23 22 49 49 H 1.09001 * 109.46957 * 59.99850 * 25 23 22 50 50 H 1.08005 * 126.49791 * 179.70925 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5805 1.1921 -0.0005 5 6 4.2918 0.0120 -0.0005 6 6 3.6145 -1.2028 -0.0006 7 7 4.0249 -2.5171 -0.0010 8 1 4.9489 -2.8124 -0.0011 9 6 2.9352 -3.3447 -0.0013 10 6 2.9927 -4.8506 -0.0013 11 7 3.1304 -5.3354 1.3785 12 6 2.8195 -6.7684 1.4665 13 6 2.7305 -7.1750 2.9149 14 1 2.8894 -6.4423 3.6922 15 6 2.4461 -8.4825 3.2477 16 7 2.3689 -8.8375 4.5117 17 14 2.1705 -9.7497 1.9031 18 1 3.4655 -10.3830 1.5468 19 1 1.2279 -10.7894 2.3885 20 1 1.5989 -9.0839 0.7051 21 6 4.4735 -5.0549 1.9034 22 6 5.5149 -5.7951 1.0615 23 6 6.9040 -5.5836 1.6671 24 6 7.9278 -6.4231 0.9003 25 6 7.2826 -4.1044 1.5706 26 6 1.8075 -2.6166 -0.0070 27 6 2.2074 -1.2074 -0.0005 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6503 2.1160 -0.0004 32 1 4.1083 2.1344 -0.0009 33 1 5.3717 0.0302 -0.0005 34 1 3.8484 -5.1815 -0.5899 35 1 2.0763 -5.2492 -0.4367 36 1 1.8666 -6.9643 0.9750 37 1 3.6060 -7.3417 0.9758 38 1 2.1692 -9.7574 4.7457 39 1 4.6649 -3.9828 1.8579 40 1 4.5369 -5.3917 2.9381 41 1 5.2821 -6.8599 1.0494 42 1 5.5000 -5.4083 0.0426 43 1 6.8945 -5.8886 2.7135 44 1 7.9372 -6.1181 -0.1460 45 1 8.9175 -6.2721 1.3314 46 1 7.6580 -7.4770 0.9692 47 1 8.2724 -3.9537 2.0015 48 1 7.2921 -3.7992 0.5241 49 1 6.5532 -3.5062 2.1167 50 1 0.7969 -2.9976 -0.0130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663716955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:58 Heat of formation + Delta-G solvation = 25.329982 kcal Electronic energy + Delta-G solvation = -26639.383403 eV Core-core repulsion = 23244.425308 eV Total energy + Delta-G solvation = -3394.958094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24499 -39.62759 -37.93829 -36.52935 -34.64269 -33.88708 -31.44250 -30.95465 -30.31831 -28.86356 -28.04929 -27.45101 -26.04707 -24.76870 -22.77876 -22.22293 -21.46280 -21.22755 -20.50548 -18.89117 -18.03733 -17.13710 -16.95631 -16.66941 -16.04366 -15.98235 -15.90985 -15.31850 -15.23299 -14.80423 -14.49254 -14.47175 -14.19829 -14.15431 -13.95560 -13.88169 -13.48465 -13.25031 -13.16268 -13.07431 -12.91490 -12.72117 -12.60533 -12.29318 -12.16861 -12.12878 -12.04916 -11.80956 -11.77677 -11.67216 -11.55450 -11.34882 -11.33413 -10.76403 -10.39812 -9.08913 -8.90350 -8.46619 -8.26352 -6.28910 0.24364 0.78882 1.34062 1.36687 1.46750 1.75842 2.22530 2.34858 3.02611 3.07236 3.34798 3.70801 3.85933 3.90489 3.92343 4.08733 4.18975 4.22489 4.26728 4.29408 4.45127 4.52355 4.54885 4.58315 4.66781 4.70923 4.75968 4.78590 4.79108 4.79926 4.89379 4.93682 4.96313 5.01544 5.06856 5.14667 5.14861 5.18758 5.23494 5.34489 5.36899 5.46462 5.47528 5.55534 5.64337 5.79708 5.93064 5.95135 5.99001 6.31898 6.35986 6.61410 6.71047 6.76934 7.33881 8.90575 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.003998 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.263894 B = 7001.344726 C = 8645.439518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.056 4.056 3 C -0.159 4.159 4 C -0.099 4.099 5 C -0.146 4.146 6 C 0.085 3.915 7 N -0.585 5.585 8 H 0.418 0.582 9 C 0.097 3.903 10 C 0.107 3.893 11 N -0.536 5.536 12 C 0.171 3.829 13 C -0.508 4.508 14 H 0.032 0.968 15 C 0.009 3.991 16 N -0.950 5.950 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.245 1.245 21 C 0.071 3.929 22 C -0.143 4.143 23 C -0.094 4.094 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.205 4.205 27 C -0.131 4.131 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.030 0.970 37 H 0.001 0.999 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.047 0.953 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 16.974 -14.335 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.057 4.057 3 C -0.178 4.178 4 C -0.118 4.118 5 C -0.167 4.167 6 C -0.023 4.023 7 N -0.190 5.190 8 H 0.256 0.744 9 C -0.011 4.011 10 C -0.021 4.021 11 N -0.259 5.259 12 C 0.044 3.956 13 C -0.547 4.547 14 H 0.050 0.950 15 C -0.188 4.188 16 N -0.591 5.591 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.168 1.168 21 C -0.057 4.057 22 C -0.182 4.182 23 C -0.113 4.113 24 C -0.199 4.199 25 C -0.199 4.199 26 C -0.231 4.231 27 C -0.136 4.136 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.129 16.992 -13.934 22.814 hybrid contribution 0.643 -1.756 -0.089 1.872 sum 6.771 15.236 -14.023 21.786 Atomic orbital electron populations 1.20760 0.90235 1.02959 1.02750 1.19416 0.96778 0.91231 0.98227 1.20813 0.94631 0.97491 1.04816 1.21125 0.94091 0.97697 0.98861 1.20306 1.00174 0.89175 1.07044 1.18536 0.93986 0.85472 1.04287 1.41775 1.08312 1.03679 1.65184 0.74412 1.20156 0.86543 0.92076 1.02331 1.20792 1.03028 0.87758 0.90497 1.62053 1.27348 1.17813 1.18685 1.20001 0.95340 0.84774 0.95488 1.21192 1.47007 0.94427 0.92046 0.94961 1.25802 0.94793 1.00586 0.97613 1.70059 1.51305 1.18897 1.18857 0.85777 0.78745 0.78700 0.80123 1.19325 1.21047 1.16807 1.22024 0.86313 0.98907 0.98469 1.22190 0.95538 1.00754 0.99741 1.21027 0.94026 0.97018 0.99264 1.21796 0.98560 0.98994 1.00511 1.21848 1.01507 0.94395 1.02186 1.21542 0.97862 0.90873 1.12785 1.19326 0.92731 0.93579 1.07979 0.90380 0.92469 0.90118 0.83985 0.83081 0.84570 0.92359 0.88455 0.95174 0.98169 0.92585 0.91079 0.93665 0.93299 0.90979 0.93172 0.91696 0.91623 0.93938 0.91596 0.91519 0.93427 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 9.95 71.24 0.71 -1.52 16 2 C -0.06 -1.39 5.87 -19.91 -0.12 -1.51 16 3 C -0.16 -3.28 9.62 22.03 0.21 -3.06 16 4 C -0.10 -1.90 10.01 22.30 0.22 -1.68 16 5 C -0.15 -3.22 10.08 22.37 0.23 -2.99 16 6 C 0.08 2.30 7.28 39.03 0.28 2.59 16 7 N -0.59 -15.44 5.27 -175.91 -0.93 -16.36 16 8 H 0.42 9.20 8.58 -92.71 -0.80 8.40 16 9 C 0.10 2.94 6.01 40.86 0.25 3.19 16 10 C 0.11 3.37 5.34 85.56 0.46 3.83 16 11 N -0.54 -21.37 4.65 -905.35 -4.21 -25.58 16 12 C 0.17 7.86 3.58 85.56 0.31 8.16 16 13 C -0.51 -29.10 9.04 25.60 0.23 -28.86 16 14 H 0.03 2.10 7.35 -2.91 -0.02 2.08 16 15 C 0.01 0.52 5.47 84.66 0.46 0.98 16 16 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 17 Si 0.94 43.41 27.47 68.60 1.88 45.29 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 21 C 0.07 2.60 4.67 86.30 0.40 3.00 16 22 C -0.14 -4.40 4.04 30.60 0.12 -4.27 16 23 C -0.09 -2.48 2.92 -10.79 -0.03 -2.51 16 24 C -0.14 -3.17 9.19 71.98 0.66 -2.50 16 25 C -0.14 -2.95 8.95 71.98 0.64 -2.31 16 26 C -0.20 -6.38 10.64 23.51 0.25 -6.13 16 27 C -0.13 -3.87 6.14 -20.20 -0.12 -3.99 16 28 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.06 1.27 7.91 -2.39 -0.02 1.25 16 30 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.06 1.62 5.92 -2.39 -0.01 1.60 16 35 H 0.10 2.96 7.81 -2.39 -0.02 2.94 16 36 H 0.03 1.38 6.92 -2.39 -0.02 1.37 16 37 H 0.00 0.03 5.41 -2.39 -0.01 0.02 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 39 H 0.07 2.34 5.02 -2.39 -0.01 2.33 16 40 H 0.04 2.04 6.81 -2.39 -0.02 2.02 16 41 H 0.05 1.78 6.13 -2.39 -0.01 1.76 16 42 H 0.07 1.87 6.41 -2.39 -0.02 1.85 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.05 1.08 6.65 -2.39 -0.02 1.06 16 50 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -68.95 387.46 2.29 -66.66 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.07 Total: 28.89 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 5.17 Total: -39.61 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -4.84 Total: -101.23 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -68.95 2.29 -66.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663716955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.993 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds