Wall clock time and date at job start Tue Mar 31 2020 10:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00084 * 2 1 4 4 C 1.52998 * 109.46791 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47308 * 65.19409 * 4 3 2 6 6 C 1.36935 * 119.99920 * 262.99161 * 5 4 3 7 7 H 1.07999 * 120.00223 * 171.75589 * 6 5 4 8 8 C 1.38813 * 120.00043 * 351.76035 * 6 5 4 9 9 N 1.31621 * 119.99997 * 42.19250 * 8 6 5 10 10 Si 1.86800 * 120.00046 * 222.19623 * 8 6 5 11 11 H 1.48506 * 109.46740 * 89.99587 * 10 8 6 12 12 H 1.48498 * 109.47242 * 209.99738 * 10 8 6 13 13 H 1.48496 * 109.46926 * 329.99988 * 10 8 6 14 14 C 1.46501 * 120.00224 * 82.98855 * 5 4 3 15 15 C 1.53003 * 109.46909 * 93.99437 * 14 5 4 16 16 N 1.46500 * 109.46868 * 182.23628 * 15 14 5 17 17 C 1.34775 * 119.99997 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99718 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00022 * 180.02562 * 17 16 15 20 20 C 1.53011 * 109.46887 * 180.02562 * 19 17 16 21 21 H 1.08997 * 109.47900 * 54.99834 * 20 19 17 22 22 C 1.53089 * 109.47729 * 175.02526 * 20 19 17 23 23 C 1.53182 * 109.16061 * 177.58139 * 22 20 19 24 24 C 1.53182 * 109.04306 * 303.03202 * 23 22 20 25 25 C 1.53089 * 109.16190 * 56.97668 * 24 23 22 26 26 O 1.42899 * 109.47635 * 294.97369 * 20 19 17 27 27 H 1.08999 * 109.47777 * 300.00289 * 1 2 3 28 28 H 1.09000 * 109.47095 * 60.00111 * 1 2 3 29 29 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47168 * 299.99924 * 3 2 1 31 31 H 1.09003 * 109.46791 * 59.99670 * 3 2 1 32 32 H 1.09000 * 109.46637 * 185.19087 * 4 3 2 33 33 H 1.08996 * 109.47486 * 305.19050 * 4 3 2 34 34 H 0.97002 * 119.99831 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47130 * 214.00028 * 14 5 4 36 36 H 1.09004 * 109.47179 * 333.99890 * 14 5 4 37 37 H 1.08998 * 109.47045 * 302.23768 * 15 14 5 38 38 H 1.08999 * 109.46574 * 62.23773 * 15 14 5 39 39 H 0.97002 * 120.00440 * 0.02562 * 16 15 14 40 40 H 1.08998 * 109.47347 * 299.99681 * 19 17 16 41 41 H 1.08999 * 109.47434 * 60.00398 * 19 17 16 42 42 H 1.08999 * 109.51973 * 297.49314 * 22 20 19 43 43 H 1.08995 * 109.52638 * 57.68476 * 22 20 19 44 44 H 1.09003 * 109.54309 * 183.15844 * 23 22 20 45 45 H 1.08997 * 109.60588 * 62.94154 * 23 22 20 46 46 H 1.08990 * 109.52037 * 297.07074 * 24 23 22 47 47 H 1.09001 * 109.56917 * 176.91323 * 24 23 22 48 48 H 1.08996 * 109.48218 * 182.40573 * 25 24 23 49 49 H 1.08997 * 109.49144 * 62.37692 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9770 0.5680 -1.2528 6 6 4.2363 -0.7757 -1.3008 7 1 4.4318 -1.2544 -2.2489 8 6 4.2478 -1.5225 -0.1308 9 7 3.3248 -1.3234 0.7862 10 14 5.5733 -2.8102 0.1424 11 1 6.7366 -2.1863 0.8226 12 1 5.0334 -3.9045 0.9885 13 1 6.0035 -3.3630 -1.1670 14 6 4.1411 1.3891 -2.4550 15 6 5.5973 1.8453 -2.5661 16 7 5.7500 2.7100 -3.7388 17 6 6.9555 3.2329 -4.0382 18 8 7.9141 2.9871 -3.3369 19 6 7.1125 4.1228 -5.2441 20 6 8.5690 4.5779 -5.3560 21 1 9.2222 3.7054 -5.3718 22 6 8.7558 5.3790 -6.6471 23 6 10.2007 5.8820 -6.7222 24 6 10.5060 6.7136 -5.4725 25 6 10.2516 5.8607 -4.2269 26 8 8.8988 5.4000 -4.2347 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8464 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.9784 2.1761 0.0936 33 1 3.8505 0.5656 0.8407 34 1 3.3331 -1.8451 1.6040 35 1 3.8759 0.8025 -3.3346 36 1 3.4910 2.2616 -2.3906 37 1 5.8744 2.3981 -1.6685 38 1 6.2439 0.9740 -2.6704 39 1 4.9834 2.9062 -4.2999 40 1 6.8348 3.5705 -6.1419 41 1 6.4663 4.9943 -5.1392 42 1 8.5472 4.7403 -7.5054 43 1 8.0737 6.2291 -6.6502 44 1 10.3258 6.5003 -7.6112 45 1 10.8817 5.0324 -6.7701 46 1 9.8592 7.5906 -5.4517 47 1 11.5488 7.0303 -5.4905 48 1 10.4262 6.4606 -3.3337 49 1 10.9270 5.0052 -4.2278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677310165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:19 Heat of formation + Delta-G solvation = -96.938332 kcal Electronic energy + Delta-G solvation = -26901.224841 eV Core-core repulsion = 23057.822780 eV Total energy + Delta-G solvation = -3843.402061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.94330 -38.72618 -36.95727 -35.57444 -34.04616 -33.75055 -32.96268 -31.36590 -29.53876 -28.50103 -26.98274 -25.28678 -24.62993 -23.67718 -22.71833 -21.88236 -20.44529 -20.25052 -19.67902 -16.92347 -16.63460 -16.54110 -16.21111 -15.60028 -15.29127 -14.90892 -14.73904 -14.69938 -14.50052 -14.28612 -13.84265 -13.75127 -13.61895 -13.11465 -13.00288 -12.84191 -12.70267 -12.33132 -12.01965 -11.88597 -11.44413 -11.37342 -11.30774 -11.13904 -10.98033 -10.86236 -10.67823 -10.53109 -10.47641 -10.33427 -10.06929 -9.83191 -9.56271 -9.44453 -9.39516 -8.58039 -8.34302 -7.97953 -6.95196 -5.72392 -2.82533 2.98879 3.46595 3.55468 3.62992 3.67436 3.69323 4.48202 4.54869 4.59842 4.66312 4.74216 4.92613 5.03515 5.07275 5.16231 5.24665 5.32571 5.34489 5.46644 5.48576 5.56288 5.57762 5.65664 5.68307 5.79179 5.87128 5.87584 5.96255 6.05166 6.06107 6.09872 6.25351 6.33420 6.44427 6.48228 6.68233 6.72509 6.75918 6.86871 7.01337 7.20650 7.65185 7.87445 7.98996 8.34277 8.60732 8.63616 9.25153 9.97092 10.41739 11.28520 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.002592 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.588888 B =10800.097232 C =11633.838678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.294 6.294 3 C 0.057 3.943 4 C 0.145 3.855 5 N -0.584 5.584 6 C -0.281 4.281 7 H 0.075 0.925 8 C 0.030 3.970 9 N -0.821 5.821 10 Si 0.845 3.155 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.282 1.282 14 C 0.149 3.851 15 C 0.096 3.904 16 N -0.729 5.729 17 C 0.508 3.492 18 O -0.532 6.532 19 C -0.136 4.136 20 C 0.106 3.894 21 H 0.065 0.935 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.063 3.937 26 O -0.365 6.365 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.069 0.931 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.111 0.889 34 H 0.249 0.751 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.394 0.606 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 15.558 -13.443 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.210 6.210 3 C -0.023 4.023 4 C 0.019 3.981 5 N -0.305 5.305 6 C -0.408 4.408 7 H 0.093 0.907 8 C -0.172 4.172 9 N -0.460 5.460 10 Si 0.673 3.327 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.207 1.207 14 C 0.021 3.979 15 C -0.029 4.029 16 N -0.381 5.381 17 C 0.293 3.707 18 O -0.408 6.408 19 C -0.176 4.176 20 C 0.048 3.952 21 H 0.083 0.917 22 C -0.189 4.189 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.014 4.014 26 O -0.284 6.284 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.227 0.773 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.071 15.134 -12.589 20.600 hybrid contribution 0.178 -0.372 -0.332 0.530 sum 6.249 14.761 -12.922 20.589 Atomic orbital electron populations 1.22611 0.86785 1.00799 0.97138 1.88785 1.13581 1.24391 1.94197 1.22987 0.98394 0.85438 0.95431 1.21407 0.89365 0.95301 0.91980 1.43869 1.76895 1.04765 1.04983 1.18854 1.44564 0.84086 0.93249 0.90673 1.24690 0.97778 0.97298 0.97420 1.70606 1.26083 1.39868 1.09492 0.87110 0.86175 0.81567 0.77847 1.21648 1.22443 1.20714 1.20743 0.91805 0.94238 0.91160 1.22371 1.01365 0.93066 0.86144 1.46124 1.10389 1.51015 1.30564 1.20428 0.83223 0.80622 0.86439 1.90716 1.38852 1.59850 1.51431 1.21746 0.97463 1.00320 0.98077 1.21750 0.94960 0.92898 0.85585 0.91671 1.22241 0.97519 1.00950 0.98196 1.21572 0.96515 0.99883 0.97988 1.22219 1.02006 0.99449 0.95825 1.22502 0.84135 0.97091 0.97693 1.87996 1.27921 1.67935 1.44549 0.96448 0.96676 0.91196 0.97055 0.96660 0.95640 0.87165 0.94096 0.93536 0.94202 0.92341 0.91409 0.77304 0.87789 0.88323 0.90803 0.90965 0.91571 0.91772 0.91178 0.91093 0.89088 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 101.05 1.11 1.59 16 2 O -0.29 -7.06 7.89 -35.23 -0.28 -7.34 16 3 C 0.06 1.24 6.26 37.16 0.23 1.48 16 4 C 0.15 3.37 5.55 -4.04 -0.02 3.35 16 5 N -0.58 -13.98 2.49 -173.24 -0.43 -14.41 16 6 C -0.28 -7.58 9.46 -15.06 -0.14 -7.73 16 7 H 0.08 2.05 8.06 -52.49 -0.42 1.63 16 8 C 0.03 0.82 4.74 -17.43 -0.08 0.74 16 9 N -0.82 -22.85 8.38 55.49 0.47 -22.38 16 10 Si 0.85 21.41 29.69 -169.99 -5.05 16.36 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 C 0.15 2.87 5.80 -4.04 -0.02 2.84 16 15 C 0.10 1.79 5.98 -4.04 -0.02 1.77 16 16 N -0.73 -10.59 5.56 -60.29 -0.33 -10.92 16 17 C 0.51 7.79 7.71 -10.99 -0.08 7.70 16 18 O -0.53 -10.69 15.42 -8.84 -0.14 -10.83 16 19 C -0.14 -1.42 5.41 -27.88 -0.15 -1.57 16 20 C 0.11 1.19 2.19 -26.68 -0.06 1.14 16 21 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 22 C -0.15 -1.21 5.42 -26.59 -0.14 -1.36 16 23 C -0.12 -0.91 6.03 -26.54 -0.16 -1.07 16 24 C -0.16 -1.25 6.14 -26.59 -0.16 -1.41 16 25 C 0.06 0.66 6.84 37.20 0.25 0.91 16 26 O -0.37 -4.94 9.64 -49.63 -0.48 -5.42 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.11 2.90 5.28 -51.93 -0.27 2.63 16 34 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.39 4.33 8.47 -40.82 -0.35 3.98 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.08 389.52 -8.86 -41.94 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -9.03 Total: -1.26 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 0.54 Total: 8.38 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.30 Total: -47.71 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.89 Total: -23.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.05 Total: 16.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.08 -8.86 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677310165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.000 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds