Wall clock time and date at job start Tue Mar 31 2020 10:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47136 * 2 1 4 4 C 1.42901 * 114.00134 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.39007 * 27.76808 * 4 3 2 6 6 C 1.54386 * 110.34205 * 265.53795 * 4 3 2 7 7 N 1.48155 * 104.61749 * 264.99280 * 6 4 3 8 8 C 1.34778 * 127.83678 * 140.39435 * 7 6 4 9 9 O 1.21270 * 119.99919 * 179.97438 * 8 7 6 10 10 C 1.50701 * 119.99900 * 359.97429 * 8 7 6 11 11 O 1.42900 * 109.46938 * 180.02562 * 10 8 7 12 12 C 1.42899 * 113.99602 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.46958 * 149.99998 * 12 11 10 14 14 C 1.52998 * 109.47449 * 269.99757 * 12 11 10 15 15 C 1.48144 * 104.32186 * 320.41624 * 7 6 4 16 16 C 1.54295 * 110.34379 * 149.99984 * 4 3 2 17 17 H 1.09001 * 110.33918 * 359.89577 * 16 4 3 18 18 C 1.52994 * 110.34022 * 237.74331 * 16 4 3 19 19 N 1.46510 * 109.46884 * 175.00171 * 18 16 4 20 20 C 1.36935 * 119.99776 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00259 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99472 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00240 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46845 * 90.00337 * 24 22 20 26 26 H 1.48503 * 109.47399 * 209.99827 * 24 22 20 27 27 H 1.48498 * 109.47295 * 330.00433 * 24 22 20 28 28 H 1.08991 * 109.47547 * 300.00330 * 1 2 3 29 29 H 1.09011 * 109.46938 * 60.00208 * 1 2 3 30 30 H 1.08998 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47713 * 239.99878 * 2 1 3 32 32 H 1.09001 * 109.47397 * 119.99594 * 2 1 3 33 33 H 1.08994 * 110.41222 * 23.77743 * 6 4 3 34 34 H 1.09001 * 110.40867 * 146.09732 * 6 4 3 35 35 H 1.08996 * 109.47596 * 300.00659 * 10 8 7 36 36 H 1.09000 * 109.46930 * 60.00213 * 10 8 7 37 37 H 1.08994 * 109.47854 * 30.00275 * 12 11 10 38 38 H 1.09005 * 109.46894 * 59.99895 * 13 12 11 39 39 H 1.09000 * 109.47278 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47367 * 300.00052 * 13 12 11 41 41 H 1.09008 * 109.46897 * 60.00142 * 14 12 11 42 42 H 1.08991 * 109.47325 * 180.02562 * 14 12 11 43 43 H 1.09004 * 109.46897 * 300.01043 * 14 12 11 44 44 H 1.08995 * 110.40756 * 280.79279 * 15 7 6 45 45 H 1.09001 * 110.40292 * 158.36558 * 15 7 6 46 46 H 1.08995 * 109.47727 * 55.00184 * 18 16 4 47 47 H 1.09001 * 109.47087 * 294.99661 * 18 16 4 48 48 H 0.96998 * 119.99423 * 359.97438 * 19 18 16 49 49 H 0.97000 * 119.99789 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8810 0.5888 -0.4751 6 6 3.9563 1.6150 1.4440 7 7 4.0884 3.0777 1.6389 8 6 3.7935 3.7949 2.7412 9 8 3.9583 4.9963 2.7450 10 6 3.2589 3.1037 3.9691 11 8 3.0249 4.0699 4.9956 12 6 2.5147 3.5156 6.2099 13 6 2.9808 4.3655 7.3938 14 6 0.9855 3.5031 6.1619 15 6 4.6177 3.5732 0.3469 16 6 3.8669 2.7514 -0.7228 17 1 2.9945 3.2985 -1.0801 18 6 4.7993 2.4185 -1.8892 19 7 5.1059 3.6424 -2.6339 20 6 5.9276 3.5903 -3.7281 21 1 6.3500 2.6472 -4.0418 22 6 6.2175 4.7499 -4.4340 23 7 5.7022 5.8992 -4.0520 24 14 7.3390 4.6790 -5.9262 25 1 6.5262 4.4365 -7.1452 26 1 8.0633 5.9682 -6.0628 27 1 8.3189 3.5761 -5.7571 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2422 1.1998 2.1551 34 1 4.9250 1.1267 1.5502 35 1 2.3237 2.6002 3.7245 36 1 3.9857 2.3704 4.3186 37 1 2.8828 2.4965 6.3271 38 1 2.6126 5.3847 7.2767 39 1 2.5912 3.9430 8.3200 40 1 4.0702 4.3744 7.4281 41 1 0.6534 2.8977 5.3184 42 1 0.5963 3.0808 7.0883 43 1 0.6173 4.5224 6.0447 44 1 5.6906 3.3926 0.2814 45 1 4.4024 4.6354 0.2304 46 1 4.3120 1.7028 -2.5512 47 1 5.7231 1.9866 -1.5040 48 1 4.7261 4.4893 -2.3523 49 1 5.1196 5.9358 -3.2773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689060436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:36 Heat of formation + Delta-G solvation = -114.541473 kcal Electronic energy + Delta-G solvation = -27133.695221 eV Core-core repulsion = 23289.529831 eV Total energy + Delta-G solvation = -3844.165390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28917 -38.97159 -37.92987 -36.57083 -34.88737 -33.07191 -32.41289 -31.37893 -29.78849 -28.51368 -27.89819 -27.42419 -24.84556 -23.71358 -22.98218 -22.09943 -21.63147 -20.09696 -19.55060 -17.60288 -17.24582 -17.03999 -16.80580 -16.39733 -15.83454 -15.55092 -15.07734 -14.79718 -14.57572 -14.30562 -14.02421 -13.70338 -13.53962 -13.27659 -13.19117 -12.93392 -12.84547 -12.56547 -12.51656 -12.40219 -12.24687 -12.04188 -11.82721 -11.73061 -11.44474 -11.24175 -11.08280 -11.01774 -10.68474 -10.65834 -10.41294 -10.02437 -9.94149 -9.83547 -9.68341 -9.16591 -8.89565 -8.65851 -7.01742 -6.09049 -3.10065 2.55315 2.61789 3.47715 3.52795 3.57675 3.62053 3.71845 4.29324 4.43211 4.55690 4.66433 4.68837 4.78527 4.80184 4.84661 4.86563 4.89759 4.99778 5.04624 5.15768 5.26121 5.26730 5.27356 5.32286 5.38312 5.47893 5.52178 5.55839 5.56520 5.66066 5.70430 5.76631 5.86497 5.88126 5.90453 5.93358 6.09634 6.17183 6.25343 6.55198 6.64273 6.87490 7.16121 7.51318 7.80177 8.17844 8.76890 9.22520 10.08945 10.23133 11.39386 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003062 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.472412 B = 9143.209794 C =10762.149780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.082 3.918 5 H 0.084 0.916 6 C 0.079 3.921 7 N -0.619 5.619 8 C 0.535 3.465 9 O -0.517 6.517 10 C 0.052 3.948 11 O -0.357 6.357 12 C 0.079 3.921 13 C -0.149 4.149 14 C -0.176 4.176 15 C 0.119 3.881 16 C -0.107 4.107 17 H 0.095 0.905 18 C 0.171 3.829 19 N -0.742 5.742 20 C -0.335 4.335 21 H 0.065 0.935 22 C -0.044 4.044 23 N -0.941 5.941 24 Si 1.084 2.916 25 H -0.295 1.295 26 H -0.287 1.287 27 H -0.295 1.295 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.368 0.632 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -15.422 20.219 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.292 6.292 4 C 0.023 3.977 5 H 0.102 0.898 6 C -0.045 4.045 7 N -0.356 5.356 8 C 0.322 3.678 9 O -0.391 6.391 10 C -0.028 4.028 11 O -0.275 6.275 12 C 0.021 3.979 13 C -0.207 4.207 14 C -0.234 4.234 15 C -0.003 4.003 16 C -0.127 4.127 17 H 0.113 0.887 18 C 0.043 3.957 19 N -0.388 5.388 20 C -0.466 4.466 21 H 0.083 0.917 22 C -0.242 4.242 23 N -0.587 5.587 24 Si 0.914 3.086 25 H -0.223 1.223 26 H -0.213 1.213 27 H -0.222 1.222 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.202 0.798 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.455 -13.628 19.049 24.901 hybrid contribution -0.812 -1.437 1.271 2.083 sum -9.267 -15.064 20.320 26.939 Atomic orbital electron populations 1.21735 0.93840 1.02050 1.03225 1.22537 0.95628 0.84145 0.99997 1.88031 1.20374 1.26061 1.94740 1.23053 0.81500 0.99167 0.93973 0.89770 1.22965 1.01406 0.82010 0.98073 1.48858 1.65163 1.08196 1.13371 1.19752 0.78138 0.87069 0.82834 1.90756 1.52107 1.14004 1.82258 1.22163 1.00711 0.91743 0.88223 1.88079 1.85130 1.32385 1.21946 1.22171 0.93584 0.97135 0.85005 1.21854 1.02133 1.00927 0.95753 1.22317 0.95817 1.03210 1.02051 1.22438 0.98006 1.00222 0.79629 1.22476 0.99920 0.94732 0.95579 0.88688 1.20612 0.94356 0.90717 0.90004 1.42354 1.58868 1.04334 1.33288 1.20015 1.24462 0.96325 1.05822 0.91706 1.25796 1.02786 0.91801 1.03805 1.70839 1.34475 1.25446 1.27901 0.83190 0.75367 0.75101 0.74903 1.22315 1.21347 1.22169 0.92054 0.91670 0.91241 0.93062 0.93640 0.90087 0.89849 0.90446 0.90576 0.92160 0.91513 0.91169 0.91853 0.92480 0.91540 0.91477 0.90113 0.89438 0.95805 0.95864 0.79828 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.50 6.50 37.15 0.24 0.74 16 3 O -0.37 -4.80 9.95 -35.23 -0.35 -5.15 16 4 C 0.08 1.02 3.20 -25.33 -0.08 0.94 16 5 H 0.08 0.91 7.39 -51.93 -0.38 0.52 16 6 C 0.08 0.84 6.66 -2.40 -0.02 0.83 16 7 N -0.62 -8.97 3.32 -169.31 -0.56 -9.53 16 8 C 0.53 8.50 7.99 -10.98 -0.09 8.41 16 9 O -0.52 -10.74 16.77 -14.35 -0.24 -10.98 16 10 C 0.05 0.59 5.21 36.01 0.19 0.78 16 11 O -0.36 -4.70 9.52 -55.14 -0.52 -5.23 16 12 C 0.08 0.70 3.34 -26.73 -0.09 0.61 16 13 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 14 C -0.18 -1.37 9.53 37.16 0.35 -1.02 16 15 C 0.12 1.99 6.41 -2.41 -0.02 1.97 16 16 C -0.11 -1.74 2.90 -89.22 -0.26 -2.00 16 17 H 0.09 1.74 7.98 -51.93 -0.41 1.32 16 18 C 0.17 3.32 5.38 -4.04 -0.02 3.30 16 19 N -0.74 -18.66 5.48 -59.91 -0.33 -18.99 16 20 C -0.34 -9.48 9.99 -15.06 -0.15 -9.63 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 23 N -0.94 -29.63 13.70 55.49 0.76 -28.87 16 24 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 25 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.68 7.24 -51.93 -0.38 0.31 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 36 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.44 7.87 -51.92 -0.41 0.03 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 45 H 0.09 1.68 7.88 -51.93 -0.41 1.27 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 48 H 0.37 9.61 6.44 -40.82 -0.26 9.35 16 49 H 0.26 7.99 6.77 -40.82 -0.28 7.71 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -36.35 398.76 -8.47 -44.82 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.85 Total: 5.00 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 0.70 Total: 1.84 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.13 Total: -57.39 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.12 Total: -21.36 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.35 -8.47 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689060436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.726 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds