Wall clock time and date at job start Tue Mar 31 2020 10:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00317 * 2 1 4 4 C 1.52998 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47263 * 304.99859 * 4 3 2 6 6 O 1.42897 * 109.46911 * 65.00330 * 4 3 2 7 7 C 1.42899 * 113.99745 * 269.99564 * 6 4 3 8 8 C 1.50707 * 109.47151 * 184.99963 * 4 3 2 9 9 O 1.21279 * 119.99766 * 245.00156 * 8 4 3 10 10 N 1.34774 * 119.99550 * 64.99877 * 8 4 3 11 11 C 1.47136 * 120.17999 * 359.97438 * 10 8 4 12 12 C 1.53624 * 107.51997 * 252.18156 * 11 10 8 13 13 C 1.53489 * 108.42923 * 290.23537 * 12 11 10 14 14 C 1.52453 * 109.16065 * 114.21184 * 13 12 11 15 15 C 1.53120 * 109.67680 * 316.06415 * 14 13 12 16 16 C 1.53431 * 109.34042 * 282.94197 * 15 14 13 17 17 H 1.08998 * 109.63088 * 312.62619 * 16 15 14 18 18 N 1.46503 * 109.63312 * 192.03008 * 16 15 14 19 19 C 1.36937 * 119.99850 * 155.99533 * 18 16 15 20 20 H 1.08008 * 120.00096 * 0.02562 * 19 18 16 21 21 C 1.38806 * 119.99982 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00383 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46850 * 60.00461 * 23 21 19 25 25 H 1.48500 * 109.46985 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47266 * 300.00578 * 23 21 19 27 27 C 1.46076 * 120.17125 * 180.02562 * 10 8 4 28 28 H 1.09005 * 109.46812 * 59.99740 * 1 2 3 29 29 H 1.08994 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46931 * 299.99955 * 1 2 3 31 31 H 1.08999 * 109.46930 * 59.99737 * 3 2 1 32 32 H 1.09000 * 109.47324 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.47117 * 60.00944 * 7 6 4 34 34 H 1.09006 * 109.47104 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.47670 * 300.00152 * 7 6 4 36 36 H 1.09007 * 109.84374 * 11.67728 * 11 10 8 37 37 H 1.08990 * 109.85292 * 132.67004 * 11 10 8 38 38 H 1.08999 * 109.64370 * 49.91205 * 12 11 10 39 39 H 1.08990 * 109.64421 * 170.54812 * 12 11 10 40 40 H 1.09005 * 109.51760 * 234.11742 * 13 12 11 41 41 H 1.08997 * 109.52231 * 354.30303 * 13 12 11 42 42 H 1.09001 * 109.43669 * 76.12519 * 14 13 12 43 43 H 1.08991 * 109.43632 * 196.04171 * 14 13 12 44 44 H 1.08998 * 109.49749 * 42.90110 * 15 14 13 45 45 H 1.09004 * 109.49546 * 162.98480 * 15 14 13 46 46 H 0.96995 * 120.00185 * 335.99842 * 18 16 15 47 47 H 0.97004 * 120.00177 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.36020 * 187.12228 * 27 10 8 49 49 H 1.09005 * 109.35859 * 306.72438 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8427 6 8 3.9658 0.5791 -1.2201 7 6 4.0472 -0.8465 -1.1648 8 6 4.1481 2.5559 0.1245 9 8 4.8070 3.0102 -0.7867 10 7 3.9635 3.2773 1.2478 11 6 3.1643 2.7302 2.3554 12 6 1.8335 3.4969 2.3882 13 6 2.1119 4.9325 2.8544 14 6 1.8100 5.8968 1.7128 15 6 2.3821 5.3428 0.4050 16 6 3.8990 5.5721 0.3766 17 1 4.1194 6.6002 0.6636 18 7 4.4109 5.3127 -0.9714 19 6 5.5801 5.8943 -1.3834 20 1 6.1251 6.5440 -0.7145 21 6 6.0654 5.6482 -2.6603 22 7 5.4015 4.8561 -3.4754 23 14 7.6608 6.4411 -3.2222 24 1 8.7675 6.0132 -2.3292 25 1 7.9587 6.0209 -4.6150 26 1 7.5248 7.9188 -3.1687 27 6 4.5551 4.6072 1.3717 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.0653 -1.2576 -0.9307 34 1 4.3810 -1.2291 -2.1293 35 1 4.7577 -1.1402 -0.3922 36 1 2.9763 1.6697 2.1873 37 1 3.6943 2.8681 3.2977 38 1 1.3959 3.5142 1.3900 39 1 1.1484 3.0122 3.0836 40 1 1.4763 5.1680 3.7080 41 1 3.1591 5.0253 3.1423 42 1 0.7310 6.0163 1.6147 43 1 2.2642 6.8644 1.9256 44 1 2.1745 4.2748 0.3406 45 1 1.9211 5.8550 -0.4396 46 1 3.9216 4.7290 -1.5720 47 1 5.7405 4.6844 -4.3679 48 1 4.4048 4.9764 2.3861 49 1 5.6238 4.5480 1.1653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689268059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:54 Heat of formation + Delta-G solvation = -88.895051 kcal Electronic energy + Delta-G solvation = -29947.926834 eV Core-core repulsion = 26104.873556 eV Total energy + Delta-G solvation = -3843.053278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75292 -39.57889 -38.51708 -37.66283 -36.42103 -34.94306 -33.70634 -31.87803 -31.05693 -28.41331 -27.86463 -27.80738 -26.67694 -25.52355 -24.39946 -24.01455 -21.80923 -21.16941 -19.43348 -18.95081 -18.42342 -18.08280 -17.34682 -16.96863 -16.62615 -16.58437 -16.37243 -16.12943 -15.83414 -15.54250 -14.99649 -14.92549 -14.83324 -14.67869 -14.47018 -13.90514 -13.53404 -13.29150 -13.17620 -13.03183 -12.89224 -12.74309 -12.69051 -12.55808 -12.36692 -12.30777 -12.10258 -11.90483 -11.74523 -11.63499 -11.44197 -11.17815 -10.90851 -10.82994 -10.78345 -10.54770 -10.17050 -9.48918 -8.55952 -7.70740 -4.93477 1.43050 1.48075 1.52908 1.78140 2.00593 2.65857 2.75663 3.03078 3.58773 3.70931 3.76171 3.88073 3.92586 4.03171 4.11274 4.24885 4.26733 4.29824 4.34146 4.42913 4.49752 4.54223 4.56217 4.62282 4.63406 4.67475 4.70229 4.77748 4.85168 4.90759 4.92011 4.97317 5.03206 5.14133 5.21663 5.27908 5.46076 5.51479 5.56939 5.61677 5.66895 5.89900 6.08154 6.17192 6.45457 6.67774 7.52528 7.63417 8.41409 8.59731 9.52212 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.005994 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.619015 B = 4670.327080 C = 6205.580609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.045 3.955 4 C 0.082 3.918 5 H 0.108 0.892 6 O -0.395 6.395 7 C 0.029 3.971 8 C 0.475 3.525 9 O -0.491 6.491 10 N -0.600 5.600 11 C 0.092 3.908 12 C -0.149 4.149 13 C -0.122 4.122 14 C -0.108 4.108 15 C -0.125 4.125 16 C 0.154 3.846 17 H 0.047 0.953 18 N -0.711 5.711 19 C -0.220 4.220 20 H 0.065 0.935 21 C -0.076 4.076 22 N -0.957 5.957 23 Si 0.959 3.041 24 H -0.288 1.288 25 H -0.302 1.302 26 H -0.277 1.277 27 C 0.105 3.895 28 H 0.035 0.965 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.370 0.630 47 H 0.237 0.763 48 H 0.114 0.886 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 -9.589 19.367 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C -0.031 4.031 4 C 0.021 3.979 5 H 0.126 0.874 6 O -0.313 6.313 7 C -0.067 4.067 8 C 0.259 3.741 9 O -0.362 6.362 10 N -0.337 5.337 11 C -0.029 4.029 12 C -0.187 4.187 13 C -0.159 4.159 14 C -0.146 4.146 15 C -0.163 4.163 16 C 0.044 3.956 17 H 0.065 0.935 18 N -0.351 5.351 19 C -0.353 4.353 20 H 0.083 0.917 21 C -0.269 4.269 22 N -0.608 5.608 23 Si 0.790 3.210 24 H -0.215 1.215 25 H -0.229 1.229 26 H -0.203 1.203 27 C -0.020 4.020 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.204 0.796 47 H 0.046 0.954 48 H 0.132 0.868 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.977 -9.297 18.669 24.564 hybrid contribution 0.912 0.260 -1.256 1.574 sum -12.065 -9.037 17.413 23.032 Atomic orbital electron populations 1.22992 0.79142 1.04208 1.00909 1.87799 1.21752 1.26695 1.95589 1.23251 0.91655 0.86057 1.02186 1.21993 0.93332 0.93172 0.89439 0.87415 1.88082 1.88195 1.21817 1.33203 1.23033 1.01706 0.79133 1.02845 1.20737 0.82956 0.86938 0.83430 1.91153 1.37553 1.69164 1.38315 1.47920 1.53053 1.16659 1.16050 1.22493 0.91966 0.98523 0.89962 1.22591 0.97079 0.96550 1.02494 1.21860 1.02621 0.93743 0.97628 1.21432 1.00571 0.99093 0.93497 1.22124 0.94498 1.01724 0.97991 1.21107 0.93164 0.95834 0.85507 0.93529 1.42536 1.25107 1.55784 1.11663 1.19388 1.00007 1.19683 0.96191 0.91702 1.25363 1.01812 1.01855 0.97821 1.69900 1.41122 1.42708 1.07052 0.85427 0.81042 0.78207 0.76355 1.21523 1.22898 1.20315 1.22375 0.95995 0.82826 1.00789 0.94608 0.87667 0.91888 0.88018 0.94891 0.91398 0.89625 0.93118 0.88891 0.88095 0.91688 0.87837 0.89634 0.91047 0.91194 0.92024 0.91003 0.95184 0.79620 0.95370 0.86816 0.95834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.61 16 2 O -0.40 -9.21 8.83 -144.34 -1.27 -10.49 16 3 C 0.05 1.20 5.16 71.98 0.37 1.57 16 4 C 0.08 2.65 2.07 29.85 0.06 2.71 16 5 H 0.11 2.76 6.97 -2.39 -0.02 2.75 16 6 O -0.39 -15.62 9.88 -125.58 -1.24 -16.86 16 7 C 0.03 0.81 10.71 113.37 1.21 2.02 16 8 C 0.48 18.88 6.27 87.66 0.55 19.43 16 9 O -0.49 -27.08 12.68 15.96 0.20 -26.87 16 10 N -0.60 -18.19 1.72 -819.37 -1.41 -19.60 16 11 C 0.09 1.62 5.15 86.47 0.45 2.07 16 12 C -0.15 -2.22 4.62 30.97 0.14 -2.07 16 13 C -0.12 -1.89 5.48 30.58 0.17 -1.73 16 14 C -0.11 -2.36 5.67 30.45 0.17 -2.19 16 15 C -0.13 -4.10 4.92 30.78 0.15 -3.95 16 16 C 0.15 6.21 2.68 45.25 0.12 6.34 16 17 H 0.05 1.90 7.84 -2.39 -0.02 1.88 16 18 N -0.71 -39.07 3.03 -321.69 -0.97 -40.05 16 19 C -0.22 -13.39 9.80 84.03 0.82 -12.56 16 20 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 21 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 22 N -0.96 -65.86 13.06 21.65 0.28 -65.57 16 23 Si 0.96 51.36 29.55 68.60 2.03 53.39 16 24 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 25 H -0.30 -16.42 7.11 99.48 0.71 -15.71 16 26 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.11 3.62 4.92 86.58 0.43 4.05 16 28 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 2.06 3.25 -2.39 -0.01 2.05 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.69 6.40 -2.39 -0.02 1.68 16 34 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 36 H 0.09 1.42 4.99 -2.38 -0.01 1.41 16 37 H 0.10 1.33 7.96 -2.39 -0.02 1.31 16 38 H 0.06 1.25 4.12 -2.39 -0.01 1.24 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 1.16 4.49 -2.39 -0.01 1.15 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 44 H 0.07 2.33 3.68 -2.39 -0.01 2.32 16 45 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.37 22.92 6.34 -92.71 -0.59 22.34 16 47 H 0.24 16.09 8.31 -92.71 -0.77 15.32 16 48 H 0.11 2.86 5.07 -2.39 -0.01 2.85 16 49 H 0.02 1.01 8.06 -2.38 -0.02 1.00 16 Total: -1.00 -87.26 358.55 4.35 -82.91 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.38 Total: 30.25 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.36 Total: 12.89 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -2.10 Total: -125.22 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.31 Total: -54.22 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.03 Total: 53.39 kcal Total: -87.26 4.35 -82.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689268059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.986 kcal (2) G-P(sol) polarization free energy of solvation -87.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds