Wall clock time and date at job start Tue Mar 31 2020 10:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47174 * 2 1 4 4 C 1.42906 * 113.99824 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46752 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47256 * 65.00003 * 5 4 3 7 7 C 1.42891 * 113.99823 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47131 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00356 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00359 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47044 * 34.99997 * 11 10 8 13 13 C 1.53001 * 109.47307 * 275.00293 * 11 10 8 14 14 C 1.52999 * 109.47269 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46909 * 60.00409 * 14 13 11 16 16 C 1.53001 * 109.46821 * 299.99866 * 15 14 13 17 17 H 1.09004 * 109.47332 * 300.00126 * 16 15 14 18 18 N 1.46494 * 109.46954 * 180.02562 * 16 15 14 19 19 C 1.36938 * 120.00256 * 85.00089 * 18 16 15 20 20 H 1.08002 * 119.99690 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00552 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99940 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00482 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47272 * 89.99685 * 23 21 19 25 25 H 1.48498 * 109.47518 * 210.00386 * 23 21 19 26 26 H 1.48500 * 109.46886 * 329.99902 * 23 21 19 27 27 C 1.52993 * 109.47263 * 155.00317 * 11 10 8 28 28 H 1.08995 * 109.46853 * 299.99672 * 1 2 3 29 29 H 1.08998 * 109.47106 * 59.99533 * 1 2 3 30 30 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47150 * 240.00482 * 2 1 3 32 32 H 1.09002 * 109.47561 * 120.00601 * 2 1 3 33 33 H 1.08993 * 109.47732 * 60.00254 * 4 3 2 34 34 H 1.09000 * 109.47141 * 299.99893 * 4 3 2 35 35 H 1.09004 * 109.46579 * 184.99441 * 5 4 3 36 36 H 1.08992 * 109.47046 * 304.99625 * 5 4 3 37 37 H 1.09007 * 109.47137 * 299.99376 * 7 6 5 38 38 H 1.08997 * 109.47704 * 59.99595 * 7 6 5 39 39 H 0.96997 * 119.99879 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47457 * 300.00198 * 13 11 10 41 41 H 1.09009 * 109.46765 * 59.99650 * 13 11 10 42 42 H 1.08994 * 109.47062 * 299.99788 * 14 13 11 43 43 H 1.08999 * 109.47146 * 179.97438 * 14 13 11 44 44 H 1.08994 * 109.47248 * 179.97438 * 15 14 13 45 45 H 1.08994 * 109.47100 * 59.99461 * 15 14 13 46 46 H 0.97000 * 120.00226 * 264.99894 * 18 16 15 47 47 H 0.96994 * 120.00254 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.47379 * 300.00141 * 27 11 10 49 49 H 1.09001 * 109.47352 * 59.99869 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7194 4.9334 1.3244 8 6 3.2252 5.4669 2.6443 9 8 2.6540 4.7305 3.4204 10 7 3.4178 6.7623 2.9622 11 6 2.9369 7.2811 4.2451 12 1 3.0351 6.5096 5.0088 13 6 1.4668 7.6841 4.1135 14 6 0.9643 8.2253 5.4534 15 6 1.7940 9.4469 5.8534 16 6 3.2641 9.0440 5.9851 17 1 3.3624 8.2722 6.7485 18 7 4.0585 10.2136 6.3686 19 6 4.1719 10.5615 7.6882 20 1 3.6752 9.9738 8.4462 21 6 4.9250 11.6694 8.0518 22 7 5.5307 12.3853 7.1282 23 14 5.0790 12.1444 9.8518 24 1 6.2554 11.4599 10.4455 25 1 5.2538 13.6149 9.9625 26 1 3.8499 11.7360 10.5783 27 6 3.7667 8.5028 4.6446 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8334 0.9767 -0.8907 34 1 3.8341 0.9764 0.8892 35 1 4.9082 3.0254 -0.0898 36 1 3.3493 3.4418 -0.8412 37 1 4.8000 5.0623 1.2617 38 1 3.2408 5.4780 0.5106 39 1 3.8743 7.3514 2.3414 40 1 1.3684 8.4555 3.3498 41 1 0.8755 6.8136 3.8288 42 1 1.0625 7.4535 6.2168 43 1 -0.0829 8.5128 5.3595 44 1 1.4358 9.8328 6.8078 45 1 1.6958 10.2186 5.0900 46 1 4.5043 10.7416 5.6879 47 1 6.0567 13.1596 7.3821 48 1 4.8140 8.2158 4.7384 49 1 3.6684 9.2743 3.8809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690787030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:45 Heat of formation + Delta-G solvation = -135.072279 kcal Electronic energy + Delta-G solvation = -26055.643824 eV Core-core repulsion = 22210.588152 eV Total energy + Delta-G solvation = -3845.055673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02295 -38.76289 -38.02546 -37.15285 -34.63070 -33.32819 -32.22009 -31.12178 -30.26498 -29.35981 -27.92837 -26.94388 -23.72266 -23.10773 -22.91875 -22.06744 -21.42304 -20.31712 -19.39467 -17.52663 -17.41286 -17.25734 -16.81521 -16.25815 -16.15130 -15.64561 -15.18170 -14.72375 -14.45990 -14.33004 -13.88406 -13.80967 -13.64221 -13.45379 -13.15728 -12.93682 -12.75832 -12.59208 -12.35794 -12.11475 -11.99799 -11.80348 -11.60617 -11.29888 -10.98011 -10.91447 -10.87277 -10.69987 -10.32110 -10.26015 -10.14565 -10.02464 -9.99778 -9.92555 -9.66994 -9.51627 -8.95865 -8.84958 -6.95353 -5.76363 -3.04784 2.62305 2.69983 3.31464 3.44317 3.49814 3.51102 3.75926 4.54722 4.58904 4.67776 4.72225 4.77396 4.84789 4.89415 4.94345 5.01269 5.02446 5.03969 5.06619 5.13968 5.30474 5.35835 5.42364 5.52066 5.59380 5.63004 5.71062 5.77190 5.81764 5.90226 5.99703 6.05131 6.17187 6.33199 6.35506 6.53814 6.54883 6.64251 6.73373 6.76219 6.89981 6.98726 7.14287 7.52777 7.71842 8.25289 8.42502 9.53682 10.11040 10.45877 11.46382 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.028497 B = 0.001973 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.315766 B =14185.314665 C =14613.349370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.043 3.957 8 C 0.512 3.488 9 O -0.519 6.519 10 N -0.723 5.723 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.183 3.817 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.399 0.601 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 -20.442 -19.299 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.037 4.037 8 C 0.297 3.703 9 O -0.393 6.393 10 N -0.376 5.376 11 C 0.047 3.953 12 H 0.106 0.894 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.072 3.928 17 H 0.067 0.933 18 N -0.364 5.364 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.168 4.168 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.233 0.767 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.711 -20.918 -18.382 28.427 hybrid contribution 0.864 0.796 0.139 1.183 sum -4.847 -20.122 -18.243 27.590 Atomic orbital electron populations 1.21738 0.93669 1.02150 1.03363 1.22460 0.95821 0.83811 0.99864 1.87988 1.20349 1.26257 1.95365 1.22484 0.82440 0.95330 1.00914 1.22593 0.98419 0.92909 0.87585 1.88094 1.80769 1.20764 1.37579 1.22224 1.00527 0.84522 0.96423 1.20180 0.79895 0.82277 0.87973 1.90738 1.40669 1.57079 1.50837 1.46053 1.60455 1.09907 1.21190 1.21029 0.93506 0.96378 0.84432 0.89431 1.21887 0.95477 1.00472 0.98460 1.21486 0.99032 0.98605 0.96218 1.22286 0.97663 0.96351 1.01385 1.20112 0.89718 0.90395 0.92530 0.93340 1.42396 1.58503 1.29773 1.05778 1.19256 1.25127 1.08143 0.84241 0.91131 1.24733 1.00514 0.98327 0.97463 1.69658 1.37278 1.19925 1.31408 0.86198 0.77763 0.77421 0.84879 1.21768 1.21827 1.20759 1.22095 0.99426 0.95743 0.99493 0.91550 0.91938 0.91170 0.93652 0.93314 0.91767 0.92231 0.91529 0.92217 0.90332 0.90319 0.76738 0.92060 0.92138 0.92158 0.92500 0.91896 0.92673 0.78354 0.93580 0.91309 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.08 10.31 -40.08 -0.41 -4.49 16 4 C 0.07 0.52 6.32 37.16 0.23 0.76 16 5 C 0.06 0.50 6.32 37.16 0.23 0.73 16 6 O -0.35 -4.33 9.84 -59.73 -0.59 -4.92 16 7 C 0.04 0.42 6.42 36.01 0.23 0.65 16 8 C 0.51 6.89 7.87 -10.99 -0.09 6.80 16 9 O -0.52 -9.49 16.16 -14.35 -0.23 -9.73 16 10 N -0.72 -8.51 5.08 -53.81 -0.27 -8.79 16 11 C 0.15 2.15 2.45 -67.93 -0.17 1.98 16 12 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 14 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 15 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 16 C 0.18 3.56 2.77 -67.91 -0.19 3.38 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.82 5.12 -53.40 -0.27 -18.09 16 19 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.13 -2.03 4.86 -26.71 -0.13 -2.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -34.95 399.64 -9.06 -44.01 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -9.06 Total: 7.20 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 0.06 Total: -1.35 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.18 Total: -54.14 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.23 Total: -19.14 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.95 -9.06 -44.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690787030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.065 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds