Wall clock time and date at job start Tue Mar 31 2020 10:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46840 * 2 1 4 4 C 1.42902 * 113.99931 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47118 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46910 * 64.99979 * 5 4 3 7 7 C 1.42904 * 114.00038 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47374 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99770 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00116 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00128 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47182 * 325.00516 * 11 10 8 13 13 C 1.52997 * 109.46983 * 85.00506 * 11 10 8 14 14 C 1.52996 * 109.47131 * 59.99859 * 13 11 10 15 15 C 1.53002 * 109.46972 * 60.00459 * 14 13 11 16 16 C 1.52997 * 109.46817 * 299.99733 * 15 14 13 17 17 H 1.09001 * 109.47502 * 300.00518 * 16 15 14 18 18 N 1.46500 * 109.47007 * 180.02562 * 16 15 14 19 19 C 1.36936 * 120.00035 * 85.00367 * 18 16 15 20 20 H 1.07997 * 120.00191 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99597 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99618 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00647 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47450 * 89.99561 * 23 21 19 25 25 H 1.48497 * 109.47342 * 210.00324 * 23 21 19 26 26 H 1.48504 * 109.46820 * 329.99792 * 23 21 19 27 27 C 1.52999 * 109.47704 * 205.00617 * 11 10 8 28 28 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47406 * 300.00092 * 1 2 3 30 30 H 1.08995 * 109.47017 * 60.00471 * 1 2 3 31 31 H 1.08999 * 109.47406 * 239.99908 * 2 1 3 32 32 H 1.09003 * 109.46992 * 119.99209 * 2 1 3 33 33 H 1.08998 * 109.47132 * 59.99938 * 4 3 2 34 34 H 1.08995 * 109.47103 * 299.99668 * 4 3 2 35 35 H 1.08996 * 109.47416 * 305.00110 * 5 4 3 36 36 H 1.08995 * 109.46906 * 184.99883 * 5 4 3 37 37 H 1.09000 * 109.46886 * 59.99926 * 7 6 5 38 38 H 1.09006 * 109.47053 * 300.00046 * 7 6 5 39 39 H 0.97001 * 120.00193 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.47289 * 299.99909 * 13 11 10 41 41 H 1.09000 * 109.47611 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.47452 * 300.00000 * 14 13 11 43 43 H 1.09000 * 109.47054 * 180.02562 * 14 13 11 44 44 H 1.09002 * 109.47070 * 179.97438 * 15 14 13 45 45 H 1.08996 * 109.47407 * 59.99513 * 15 14 13 46 46 H 0.97002 * 120.00030 * 265.00025 * 18 16 15 47 47 H 0.97001 * 120.00319 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.47839 * 180.02562 * 27 11 10 49 49 H 1.09000 * 109.47160 * 59.99903 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5462 1.2204 7 6 3.7190 4.9348 1.3223 8 6 3.2245 5.4696 2.6416 9 8 2.6534 4.7338 3.4184 10 7 3.4179 6.7651 2.9588 11 6 2.9367 7.2850 4.2410 12 1 2.0025 6.7901 4.5062 13 6 3.9822 7.0157 5.3252 14 6 5.2936 7.7103 4.9529 15 6 5.0570 9.2174 4.8358 16 6 4.0115 9.4868 3.7516 17 1 4.3694 9.0999 2.7975 18 7 3.7854 10.9298 3.6391 19 6 4.6066 11.6922 2.8519 20 1 5.4212 11.2297 2.3144 21 6 4.3926 13.0596 2.7457 22 7 5.1823 13.7924 1.9895 23 14 2.9842 13.8597 3.6759 24 1 3.4569 14.2890 5.0166 25 1 2.4999 15.0423 2.9196 26 1 1.8757 12.8837 3.8311 27 6 2.7001 8.7921 4.1240 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9769 0.8908 35 1 3.3498 3.4410 -0.8424 36 1 4.9081 3.0255 -0.0892 37 1 3.2417 5.4790 0.5074 38 1 4.7998 5.0629 1.2608 39 1 3.8751 7.3535 2.3377 40 1 4.1507 5.9421 5.4087 41 1 3.6241 7.4021 6.2794 42 1 5.6516 7.3235 3.9988 43 1 6.0385 7.5181 5.7250 44 1 5.9914 9.7124 4.5710 45 1 4.6990 9.6043 5.7898 46 1 3.0540 11.3453 4.1221 47 1 5.0326 14.7479 1.9149 48 1 2.3425 9.1790 5.0781 49 1 1.9553 8.9840 3.3516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690787031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:48 Heat of formation + Delta-G solvation = -128.499603 kcal Electronic energy + Delta-G solvation = -26537.250000 eV Core-core repulsion = 22692.479340 eV Total energy + Delta-G solvation = -3844.770660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16321 -38.78878 -38.08600 -37.09261 -34.59665 -33.09714 -32.18086 -31.38787 -30.33118 -29.51040 -28.42052 -27.09335 -23.51351 -23.08174 -22.86164 -22.22641 -21.19120 -20.88588 -18.97600 -17.69894 -17.47348 -17.20772 -17.13092 -16.15719 -16.02883 -15.42248 -15.22584 -14.96656 -14.63121 -14.50185 -13.92254 -13.81303 -13.72266 -13.49799 -12.95314 -12.83340 -12.67375 -12.61460 -12.37419 -12.13451 -11.96730 -11.83127 -11.74377 -11.57038 -11.28255 -11.25061 -11.01885 -10.92190 -10.44259 -10.27802 -10.10362 -9.95544 -9.89308 -9.72894 -9.69946 -9.60961 -8.99016 -8.87597 -7.31228 -5.81154 -3.16890 2.66617 2.76546 3.34951 3.35297 3.38077 3.43280 3.83043 4.55639 4.60632 4.71130 4.75111 4.82409 4.88636 4.94715 4.98890 4.99406 5.03470 5.07028 5.08139 5.10657 5.12616 5.35307 5.42464 5.45745 5.47571 5.58390 5.60449 5.61676 5.76249 5.83841 5.86847 5.95710 6.01750 6.13023 6.22460 6.38579 6.40661 6.59715 6.62047 6.78529 6.83043 6.93729 6.97720 7.58014 7.94185 8.29003 8.37852 9.16227 9.89094 10.08665 11.36995 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.002323 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.161142 B =12050.364097 C =12416.139791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.355 6.355 7 C 0.042 3.958 8 C 0.515 3.485 9 O -0.525 6.525 10 N -0.718 5.718 11 C 0.155 3.845 12 H 0.085 0.915 13 C -0.129 4.129 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.185 3.815 17 H 0.050 0.950 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.885 3.115 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.137 4.137 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.404 0.596 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.075 0.925 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -25.121 -2.667 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.273 6.273 7 C -0.039 4.039 8 C 0.299 3.701 9 O -0.400 6.400 10 N -0.373 5.373 11 C 0.050 3.950 12 H 0.103 0.897 13 C -0.167 4.167 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.075 3.925 17 H 0.068 0.932 18 N -0.391 5.391 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.240 0.760 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.836 -25.501 -2.136 25.876 hybrid contribution -0.278 1.005 0.083 1.046 sum -4.114 -24.497 -2.052 24.924 Atomic orbital electron populations 1.21738 0.93700 1.02108 1.03377 1.22455 0.95805 0.83869 0.99828 1.87995 1.20395 1.26181 1.95356 1.22482 0.82387 0.95383 1.00850 1.22593 0.98464 0.92814 0.87692 1.88074 1.80745 1.20806 1.37667 1.22235 1.00652 0.84429 0.96536 1.20166 0.79693 0.82334 0.87861 1.90712 1.41066 1.57072 1.51173 1.46087 1.60330 1.09987 1.20873 1.20909 0.97387 0.94049 0.82657 0.89710 1.21912 0.96031 1.00540 0.98225 1.21494 0.96425 0.96448 1.00935 1.22248 1.01312 0.93756 1.00405 1.20130 0.91742 0.84626 0.95991 0.93187 1.42789 1.36197 1.02875 1.57228 1.19044 1.08412 0.89714 1.20158 0.89243 1.24681 0.98647 0.96186 0.99666 1.69700 1.39802 1.05883 1.42725 0.86548 0.83009 0.79132 0.79804 1.21128 1.21803 1.20307 1.22171 0.99703 0.92856 1.02871 0.91204 0.91588 0.91900 0.93642 0.93377 0.91779 0.92305 0.92125 0.91497 0.90104 0.90242 0.76012 0.91933 0.91169 0.92470 0.92686 0.91573 0.92644 0.80622 0.93059 0.90602 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.24 10.31 -40.09 -0.41 -4.66 16 4 C 0.07 0.56 6.32 37.16 0.23 0.80 16 5 C 0.06 0.54 6.32 37.16 0.23 0.77 16 6 O -0.35 -4.55 9.84 -59.73 -0.59 -5.13 16 7 C 0.04 0.44 6.42 36.01 0.23 0.68 16 8 C 0.51 7.11 7.87 -10.99 -0.09 7.02 16 9 O -0.52 -9.43 16.16 -14.35 -0.23 -9.66 16 10 N -0.72 -8.99 4.23 -53.81 -0.23 -9.22 16 11 C 0.15 2.06 2.78 -67.93 -0.19 1.87 16 12 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 13 C -0.13 -1.66 5.60 -26.73 -0.15 -1.81 16 14 C -0.11 -1.53 5.77 -26.73 -0.15 -1.68 16 15 C -0.14 -2.22 5.50 -26.73 -0.15 -2.37 16 16 C 0.18 3.21 2.60 -67.93 -0.18 3.03 16 17 H 0.05 0.87 6.44 -51.93 -0.33 0.53 16 18 N -0.75 -16.68 4.93 -53.42 -0.26 -16.95 16 19 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -28.65 13.97 55.49 0.78 -27.88 16 23 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 27 C -0.14 -2.00 5.08 -26.73 -0.14 -2.13 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.40 4.58 6.87 -40.82 -0.28 4.30 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.36 8.01 5.66 -40.82 -0.23 7.78 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -34.65 392.09 -8.55 -43.20 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.84 Total: 7.96 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 0.04 Total: -0.54 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.28 Total: -54.04 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.23 Total: -19.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.65 -8.55 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690787031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.296 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds