Wall clock time and date at job start Tue Mar 31 2020 10:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46840 * 2 1 4 4 C 1.42902 * 113.99931 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47118 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46910 * 64.99979 * 5 4 3 7 7 C 1.42904 * 114.00038 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47374 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99770 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00116 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00128 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47182 * 325.00516 * 11 10 8 13 13 C 1.52997 * 109.46983 * 85.00506 * 11 10 8 14 14 C 1.52996 * 109.47131 * 59.99859 * 13 11 10 15 15 C 1.53002 * 109.46972 * 60.00459 * 14 13 11 16 16 C 1.52997 * 109.46817 * 299.99733 * 15 14 13 17 17 H 1.09001 * 109.47502 * 300.00518 * 16 15 14 18 18 N 1.46500 * 109.47007 * 180.02562 * 16 15 14 19 19 C 1.36936 * 120.00035 * 85.00367 * 18 16 15 20 20 H 1.07997 * 120.00191 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99597 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99618 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00647 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47450 * 89.99561 * 23 21 19 25 25 H 1.48497 * 109.47342 * 210.00324 * 23 21 19 26 26 H 1.48504 * 109.46820 * 329.99792 * 23 21 19 27 27 C 1.52999 * 109.47704 * 205.00617 * 11 10 8 28 28 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47406 * 300.00092 * 1 2 3 30 30 H 1.08995 * 109.47017 * 60.00471 * 1 2 3 31 31 H 1.08999 * 109.47406 * 239.99908 * 2 1 3 32 32 H 1.09003 * 109.46992 * 119.99209 * 2 1 3 33 33 H 1.08998 * 109.47132 * 59.99938 * 4 3 2 34 34 H 1.08995 * 109.47103 * 299.99668 * 4 3 2 35 35 H 1.08996 * 109.47416 * 305.00110 * 5 4 3 36 36 H 1.08995 * 109.46906 * 184.99883 * 5 4 3 37 37 H 1.09000 * 109.46886 * 59.99926 * 7 6 5 38 38 H 1.09006 * 109.47053 * 300.00046 * 7 6 5 39 39 H 0.97001 * 120.00193 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.47289 * 299.99909 * 13 11 10 41 41 H 1.09000 * 109.47611 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.47452 * 300.00000 * 14 13 11 43 43 H 1.09000 * 109.47054 * 180.02562 * 14 13 11 44 44 H 1.09002 * 109.47070 * 179.97438 * 15 14 13 45 45 H 1.08996 * 109.47407 * 59.99513 * 15 14 13 46 46 H 0.97002 * 120.00030 * 265.00025 * 18 16 15 47 47 H 0.97001 * 120.00319 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.47839 * 180.02562 * 27 11 10 49 49 H 1.09000 * 109.47160 * 59.99903 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5462 1.2204 7 6 3.7190 4.9348 1.3223 8 6 3.2245 5.4696 2.6416 9 8 2.6534 4.7338 3.4184 10 7 3.4179 6.7651 2.9588 11 6 2.9367 7.2850 4.2410 12 1 2.0025 6.7901 4.5062 13 6 3.9822 7.0157 5.3252 14 6 5.2936 7.7103 4.9529 15 6 5.0570 9.2174 4.8358 16 6 4.0115 9.4868 3.7516 17 1 4.3694 9.0999 2.7975 18 7 3.7854 10.9298 3.6391 19 6 4.6066 11.6922 2.8519 20 1 5.4212 11.2297 2.3144 21 6 4.3926 13.0596 2.7457 22 7 5.1823 13.7924 1.9895 23 14 2.9842 13.8597 3.6759 24 1 3.4569 14.2890 5.0166 25 1 2.4999 15.0423 2.9196 26 1 1.8757 12.8837 3.8311 27 6 2.7001 8.7921 4.1240 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9769 0.8908 35 1 3.3498 3.4410 -0.8424 36 1 4.9081 3.0255 -0.0892 37 1 3.2417 5.4790 0.5074 38 1 4.7998 5.0629 1.2608 39 1 3.8751 7.3535 2.3377 40 1 4.1507 5.9421 5.4087 41 1 3.6241 7.4021 6.2794 42 1 5.6516 7.3235 3.9988 43 1 6.0385 7.5181 5.7250 44 1 5.9914 9.7124 4.5710 45 1 4.6990 9.6043 5.7898 46 1 3.0540 11.3453 4.1221 47 1 5.0326 14.7479 1.9149 48 1 2.3425 9.1790 5.0781 49 1 1.9553 8.9840 3.3516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690787031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:47 Heat of formation + Delta-G solvation = -152.422918 kcal Electronic energy + Delta-G solvation = -26538.287393 eV Core-core repulsion = 22692.479340 eV Total energy + Delta-G solvation = -3845.808053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27452 -39.67817 -39.07586 -37.99411 -36.22155 -34.45560 -33.23864 -32.79731 -31.36599 -30.40466 -29.88045 -27.98800 -25.36217 -23.68048 -23.52560 -23.39682 -22.52626 -22.10916 -20.32366 -19.49179 -18.39783 -18.04846 -17.88852 -17.07424 -16.83184 -16.70985 -16.42105 -16.18943 -15.77600 -15.59105 -15.36337 -14.90709 -14.85275 -14.64323 -14.25181 -14.21094 -13.75949 -13.50017 -13.38241 -13.10885 -13.06875 -12.98232 -12.91848 -12.84281 -12.38964 -12.38107 -12.19257 -11.95344 -11.89238 -11.80359 -11.62527 -11.51167 -11.02809 -10.87109 -10.81828 -10.69521 -10.54198 -10.02738 -9.26780 -7.98723 -5.31164 1.40646 1.42843 1.50132 1.61589 1.86674 2.51413 2.76616 3.01307 3.33065 3.46713 3.76903 3.87081 3.92759 4.07573 4.15546 4.18434 4.22310 4.25897 4.29072 4.32047 4.34576 4.35511 4.48178 4.51868 4.53976 4.54340 4.66811 4.71068 4.74537 4.80606 4.89634 4.94554 5.02582 5.10099 5.17621 5.21985 5.25415 5.38222 5.49689 5.51639 5.64712 5.82334 6.05960 6.25489 6.31792 6.57246 7.12099 7.25212 7.89163 8.06875 9.22523 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.002323 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.161142 B =12050.364097 C =12416.139791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.414 6.414 4 C 0.060 3.940 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.043 3.957 8 C 0.512 3.488 9 O -0.572 6.572 10 N -0.711 5.711 11 C 0.159 3.841 12 H 0.080 0.920 13 C -0.122 4.122 14 C -0.105 4.105 15 C -0.129 4.129 16 C 0.178 3.822 17 H 0.050 0.950 18 N -0.752 5.752 19 C -0.221 4.221 20 H 0.061 0.939 21 C -0.067 4.067 22 N -0.985 5.985 23 Si 0.951 3.049 24 H -0.283 1.283 25 H -0.301 1.301 26 H -0.250 1.250 27 C -0.125 4.125 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.411 0.589 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.364 0.636 47 H 0.255 0.745 48 H 0.086 0.914 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 -26.606 -2.371 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.017 4.017 5 C -0.021 4.021 6 O -0.311 6.311 7 C -0.037 4.037 8 C 0.299 3.701 9 O -0.450 6.450 10 N -0.365 5.365 11 C 0.054 3.946 12 H 0.098 0.902 13 C -0.160 4.160 14 C -0.143 4.143 15 C -0.169 4.169 16 C 0.071 3.929 17 H 0.068 0.932 18 N -0.395 5.395 19 C -0.352 4.352 20 H 0.079 0.921 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.779 3.221 24 H -0.209 1.209 25 H -0.228 1.228 26 H -0.175 1.175 27 C -0.163 4.163 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.248 0.752 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.197 0.803 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.419 -27.035 -1.829 27.454 hybrid contribution -0.027 1.359 -0.045 1.360 sum -4.446 -25.676 -1.875 26.125 Atomic orbital electron populations 1.21771 0.93542 1.03271 1.02313 1.22634 0.96072 0.83014 1.00868 1.87952 1.21942 1.27903 1.95591 1.22689 0.81399 0.95616 1.01960 1.22859 1.00167 0.92673 0.86391 1.88029 1.81617 1.21719 1.39687 1.22334 1.02410 0.83978 0.94958 1.20761 0.78694 0.82071 0.88552 1.90690 1.43291 1.58186 1.52860 1.46045 1.59822 1.09915 1.20709 1.20822 0.97560 0.92969 0.83275 0.90156 1.21854 0.95427 1.00197 0.98545 1.21402 0.97108 0.94048 1.01740 1.22091 0.99396 0.95716 0.99703 1.20377 0.93782 0.82182 0.96598 0.93191 1.42827 1.35522 1.04615 1.56515 1.19015 1.07374 0.89930 1.18843 0.92113 1.25464 1.01801 0.97072 1.01501 1.69877 1.42347 1.05925 1.45405 0.85461 0.80501 0.78103 0.78015 1.20910 1.22799 1.17459 1.22028 0.97740 0.93220 1.03332 0.88961 0.93359 0.92185 0.91598 0.93228 0.88847 0.92862 0.91641 0.88716 0.88176 0.87306 0.75200 0.92320 0.90009 0.92037 0.91408 0.94189 0.92509 0.80280 0.93585 0.89545 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.41 -9.00 10.31 -144.34 -1.49 -10.49 16 4 C 0.06 0.94 6.32 71.98 0.45 1.39 16 5 C 0.06 0.87 6.32 71.98 0.45 1.32 16 6 O -0.39 -9.59 9.84 -125.55 -1.24 -10.83 16 7 C 0.04 0.83 6.42 71.24 0.46 1.29 16 8 C 0.51 13.50 7.87 87.66 0.69 14.19 16 9 O -0.57 -20.31 16.16 15.99 0.26 -20.05 16 10 N -0.71 -16.54 4.23 -442.54 -1.87 -18.41 16 11 C 0.16 3.92 2.78 44.99 0.13 4.04 16 12 H 0.08 2.14 7.58 -2.39 -0.02 2.12 16 13 C -0.12 -2.86 5.60 30.59 0.17 -2.68 16 14 C -0.10 -2.55 5.77 30.59 0.18 -2.37 16 15 C -0.13 -3.98 5.50 30.59 0.17 -3.81 16 16 C 0.18 5.91 2.60 44.99 0.12 6.03 16 17 H 0.05 1.67 6.44 -2.39 -0.02 1.65 16 18 N -0.75 -32.48 4.93 -322.94 -1.59 -34.07 16 19 C -0.22 -11.89 10.41 84.03 0.87 -11.02 16 20 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 22 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 23 Si 0.95 44.51 27.74 68.60 1.90 46.41 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 27 C -0.12 -3.33 5.08 30.60 0.16 -3.18 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.41 8.51 6.87 -92.71 -0.64 7.87 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.36 15.28 5.66 -92.71 -0.52 14.76 16 47 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.49 392.09 1.51 -74.98 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.29 Total: 32.33 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.53 Total: 1.64 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.16 Total: -114.00 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.46 Total: -41.37 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Total: -76.49 1.51 -74.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690787031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.441 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds