Wall clock time and date at job start Tue Mar 31 2020 10:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00131 * 2 1 4 4 C 1.52997 * 109.47129 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47638 * 65.00026 * 4 3 2 6 6 C 1.42895 * 114.00449 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47387 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47224 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00264 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64629 * 0.02562 * 10 8 7 12 12 C 1.54327 * 107.27141 * 181.01938 * 11 10 8 13 13 C 1.55160 * 102.93938 * 22.19733 * 12 11 10 14 14 H 1.09001 * 111.00554 * 82.60787 * 13 12 11 15 15 C 1.53004 * 111.00350 * 206.42407 * 13 12 11 16 16 N 1.46501 * 109.46928 * 293.54387 * 15 13 12 17 17 C 1.46501 * 120.00123 * 90.00073 * 16 15 13 18 18 C 1.36933 * 120.00435 * 270.00403 * 16 15 13 19 19 H 1.08006 * 119.99746 * 23.30764 * 18 16 15 20 20 C 1.38807 * 120.00267 * 203.32015 * 18 16 15 21 21 N 1.31613 * 120.00229 * 14.40246 * 20 18 16 22 22 Si 1.86808 * 119.99977 * 194.40422 * 20 18 16 23 23 H 1.48496 * 109.46875 * 59.99778 * 22 20 18 24 24 H 1.48500 * 109.47102 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47007 * 299.99794 * 22 20 18 26 26 C 1.47427 * 125.64864 * 179.71864 * 10 8 7 27 27 H 1.08997 * 109.47108 * 300.00393 * 1 2 3 28 28 H 1.09005 * 109.46786 * 60.00213 * 1 2 3 29 29 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47104 * 59.99641 * 3 2 1 31 31 H 1.09004 * 109.46840 * 299.99844 * 3 2 1 32 32 H 1.09003 * 109.46909 * 304.99426 * 4 3 2 33 33 H 1.09000 * 109.47322 * 184.99910 * 4 3 2 34 34 H 1.09000 * 109.47111 * 299.99841 * 6 5 4 35 35 H 1.09000 * 109.47423 * 59.99708 * 6 5 4 36 36 H 1.09000 * 109.47055 * 300.00108 * 7 6 5 37 37 H 1.08998 * 109.47024 * 60.00145 * 7 6 5 38 38 H 1.08993 * 109.88616 * 300.44292 * 11 10 8 39 39 H 1.08999 * 109.88272 * 61.45328 * 11 10 8 40 40 H 1.09000 * 110.72233 * 140.55655 * 12 11 10 41 41 H 1.08995 * 110.72462 * 263.83342 * 12 11 10 42 42 H 1.08993 * 109.47033 * 53.54246 * 15 13 12 43 43 H 1.09001 * 109.47098 * 173.54607 * 15 13 12 44 44 H 1.08998 * 109.47166 * 95.18307 * 17 16 15 45 45 H 1.08999 * 109.47489 * 215.18778 * 17 16 15 46 46 H 1.09006 * 109.47090 * 335.18446 * 17 16 15 47 47 H 0.97005 * 120.00722 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.36460 * 274.74831 * 26 10 8 49 49 H 1.08995 * 110.36634 * 37.06552 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4191 -1.3245 7 6 5.7246 -0.2351 -2.6642 8 6 7.2181 -0.4038 -2.7727 9 8 7.9372 -0.0365 -1.8678 10 7 7.7549 -0.9629 -3.8753 11 6 7.0035 -1.4496 -5.0416 12 6 8.0296 -2.0273 -6.0392 13 6 9.2497 -2.3482 -5.1359 14 1 9.1272 -3.3120 -4.6417 15 6 10.5517 -2.3082 -5.9384 16 7 10.5563 -3.3991 -6.9163 17 6 10.0096 -3.1824 -8.2581 18 6 11.0715 -4.6214 -6.5762 19 1 11.1246 -4.9152 -5.5382 20 6 11.5259 -5.4827 -7.5654 21 7 11.7289 -5.0344 -8.7860 22 14 11.8490 -7.2783 -7.1641 23 1 10.5944 -7.9120 -6.6851 24 1 12.3233 -7.9805 -8.3836 25 1 12.8857 -7.3700 -6.1048 26 6 9.1931 -1.1820 -4.1144 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1764 0.0889 34 1 5.8629 1.3949 -1.2622 35 1 5.7351 -0.2134 -0.5104 36 1 5.2429 -1.2109 -2.7261 37 1 5.3707 0.3971 -3.4786 38 1 6.3059 -2.2286 -4.7345 39 1 6.4591 -0.6252 -5.5022 40 1 7.6456 -2.9348 -6.5053 41 1 8.2929 -1.2865 -6.7941 42 1 10.6287 -1.3536 -6.4587 43 1 11.3990 -2.4229 -5.2622 44 1 10.8170 -2.9187 -8.9411 45 1 9.5241 -4.0948 -8.6044 46 1 9.2808 -2.3724 -8.2270 47 1 12.0468 -5.6361 -9.4772 48 1 9.6489 -0.2849 -4.5336 49 1 9.6928 -1.4650 -3.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692000305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:14 Heat of formation + Delta-G solvation = -105.682033 kcal Electronic energy + Delta-G solvation = -26081.199693 eV Core-core repulsion = 22237.418477 eV Total energy + Delta-G solvation = -3843.781216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.06740 -38.77465 -37.83780 -37.28619 -35.34215 -32.66920 -31.96510 -30.49527 -29.87128 -29.12227 -26.66017 -26.10023 -25.61358 -23.87483 -22.91395 -22.49323 -21.18575 -19.80524 -19.05162 -17.65685 -17.21884 -16.67783 -16.52391 -16.37787 -15.97486 -15.66107 -15.49443 -15.05232 -14.79751 -14.34044 -13.91912 -13.68702 -13.59347 -13.33544 -13.08203 -12.81317 -12.70031 -12.43910 -12.13015 -12.02384 -11.93892 -11.74210 -11.47408 -11.33621 -11.28682 -11.02161 -10.88297 -10.72234 -10.47268 -10.34520 -10.09629 -10.02531 -9.90585 -9.86876 -9.81449 -9.81106 -8.58266 -8.51915 -6.72333 -5.71459 -3.18348 2.61657 2.81344 3.36736 3.39573 3.45076 3.46121 3.53321 4.47357 4.53976 4.58839 4.73205 4.79001 4.82801 4.87123 4.93389 4.95341 5.02002 5.08334 5.17428 5.18545 5.28896 5.31509 5.32269 5.38764 5.48077 5.55142 5.61141 5.63808 5.75719 5.88062 5.97009 6.09983 6.23650 6.24049 6.42875 6.52910 6.72159 6.74415 6.75350 6.89268 6.91409 7.34975 7.56780 7.72934 7.81615 8.14316 8.41131 9.24819 9.88497 10.37415 11.32925 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.001995 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.615550 B =14033.348424 C =14420.417983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.065 3.935 5 O -0.384 6.384 6 C 0.079 3.921 7 C -0.134 4.134 8 C 0.531 3.469 9 O -0.550 6.550 10 N -0.614 5.614 11 C 0.097 3.903 12 C -0.116 4.116 13 C -0.117 4.117 14 H 0.082 0.918 15 C 0.162 3.838 16 N -0.598 5.598 17 C 0.161 3.839 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.109 3.891 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.029 0.971 45 H 0.037 0.963 46 H 0.002 0.998 47 H 0.252 0.748 48 H 0.067 0.933 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 13.796 13.340 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.303 6.303 6 C 0.002 3.998 7 C -0.174 4.174 8 C 0.319 3.681 9 O -0.429 6.429 10 N -0.348 5.348 11 C -0.026 4.026 12 C -0.154 4.154 13 C -0.140 4.140 14 H 0.101 0.899 15 C 0.034 3.966 16 N -0.321 5.321 17 C 0.016 3.984 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C -0.013 4.013 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.020 0.980 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.359 13.701 13.548 27.313 hybrid contribution 0.044 -0.762 0.229 0.797 sum -19.315 12.939 13.777 27.024 Atomic orbital electron populations 1.22754 0.81054 1.02942 0.99837 1.87978 1.19601 1.27293 1.95363 1.22577 0.92418 0.85534 1.00867 1.22493 0.93181 0.97693 0.87805 1.87863 1.22210 1.82239 1.38013 1.22118 0.80766 1.00192 0.96753 1.21423 0.92784 1.04017 0.99174 1.20000 0.89957 0.77217 0.80904 1.90700 1.63110 1.50619 1.38470 1.48580 1.08923 1.59886 1.17374 1.22188 0.95492 0.98406 0.86465 1.22622 0.94789 1.01303 0.96688 1.23246 0.98370 0.97039 0.95302 0.89937 1.20610 0.93003 0.91270 0.91713 1.43824 1.69593 1.08661 1.09984 1.20832 0.94821 0.96657 0.86065 1.19121 1.34905 0.91800 0.92718 0.91558 1.25005 0.99323 0.98934 0.96323 1.70058 1.49153 1.33865 1.02060 0.86368 0.78082 0.85249 0.77034 1.21142 1.21694 1.20942 1.22415 0.80498 0.98677 0.99753 0.94212 0.93991 0.89519 0.91807 0.92351 0.92279 0.91646 0.92476 0.92333 0.88032 0.88226 0.91524 0.91690 0.89729 0.90827 0.94343 0.93150 0.95264 0.94428 0.97953 0.93742 0.91518 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.74 10.67 -40.08 -0.43 -4.17 16 3 C 0.06 0.46 6.32 37.16 0.23 0.70 16 4 C 0.07 0.54 6.32 37.16 0.23 0.77 16 5 O -0.38 -4.24 10.31 -40.08 -0.41 -4.65 16 6 C 0.08 0.86 5.23 37.16 0.19 1.05 16 7 C -0.13 -1.45 5.26 -27.88 -0.15 -1.59 16 8 C 0.53 7.47 7.85 -10.99 -0.09 7.39 16 9 O -0.55 -9.54 16.24 5.56 0.09 -9.45 16 10 N -0.61 -8.48 3.32 -170.38 -0.57 -9.04 16 11 C 0.10 1.15 6.48 -3.06 -0.02 1.13 16 12 C -0.12 -1.64 5.02 -24.89 -0.13 -1.77 16 13 C -0.12 -1.91 3.31 -88.35 -0.29 -2.20 16 14 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 15 C 0.16 3.14 5.16 -4.04 -0.02 3.12 16 16 N -0.60 -14.36 2.84 -181.12 -0.51 -14.88 16 17 C 0.16 3.77 8.61 59.85 0.52 4.28 16 18 C -0.26 -6.87 9.64 -15.06 -0.15 -7.01 16 19 H 0.07 1.75 7.87 -52.48 -0.41 1.34 16 20 C 0.00 0.07 5.07 -17.43 -0.09 -0.02 16 21 N -0.91 -26.19 10.81 55.49 0.60 -25.59 16 22 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.11 1.62 6.38 -2.41 -0.02 1.61 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.03 7.15 -51.93 -0.37 0.66 16 42 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 43 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 44 H 0.03 0.76 7.32 -51.93 -0.38 0.38 16 45 H 0.04 0.95 7.40 -51.93 -0.38 0.56 16 46 H 0.00 0.04 6.16 -51.93 -0.32 -0.28 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 49 H 0.07 1.17 8.03 -51.93 -0.42 0.76 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -32.68 395.17 -7.96 -40.64 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -9.01 Total: -4.27 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 1.35 Total: 8.76 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.48 Total: -49.51 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.75 Total: -18.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.68 -7.96 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692000305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.041 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds