Wall clock time and date at job start Tue Mar 31 2020 10:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00131 * 2 1 4 4 C 1.52997 * 109.47129 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47638 * 65.00026 * 4 3 2 6 6 C 1.42895 * 114.00449 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47387 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47224 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00264 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64629 * 0.02562 * 10 8 7 12 12 C 1.54327 * 107.27141 * 181.01938 * 11 10 8 13 13 C 1.55160 * 102.93938 * 22.19733 * 12 11 10 14 14 H 1.09001 * 111.00554 * 82.60787 * 13 12 11 15 15 C 1.53004 * 111.00350 * 206.42407 * 13 12 11 16 16 N 1.46501 * 109.46928 * 293.54387 * 15 13 12 17 17 C 1.46501 * 120.00123 * 90.00073 * 16 15 13 18 18 C 1.36933 * 120.00435 * 270.00403 * 16 15 13 19 19 H 1.08006 * 119.99746 * 23.30764 * 18 16 15 20 20 C 1.38807 * 120.00267 * 203.32015 * 18 16 15 21 21 N 1.31613 * 120.00229 * 14.40246 * 20 18 16 22 22 Si 1.86808 * 119.99977 * 194.40422 * 20 18 16 23 23 H 1.48496 * 109.46875 * 59.99778 * 22 20 18 24 24 H 1.48500 * 109.47102 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47007 * 299.99794 * 22 20 18 26 26 C 1.47427 * 125.64864 * 179.71864 * 10 8 7 27 27 H 1.08997 * 109.47108 * 300.00393 * 1 2 3 28 28 H 1.09005 * 109.46786 * 60.00213 * 1 2 3 29 29 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47104 * 59.99641 * 3 2 1 31 31 H 1.09004 * 109.46840 * 299.99844 * 3 2 1 32 32 H 1.09003 * 109.46909 * 304.99426 * 4 3 2 33 33 H 1.09000 * 109.47322 * 184.99910 * 4 3 2 34 34 H 1.09000 * 109.47111 * 299.99841 * 6 5 4 35 35 H 1.09000 * 109.47423 * 59.99708 * 6 5 4 36 36 H 1.09000 * 109.47055 * 300.00108 * 7 6 5 37 37 H 1.08998 * 109.47024 * 60.00145 * 7 6 5 38 38 H 1.08993 * 109.88616 * 300.44292 * 11 10 8 39 39 H 1.08999 * 109.88272 * 61.45328 * 11 10 8 40 40 H 1.09000 * 110.72233 * 140.55655 * 12 11 10 41 41 H 1.08995 * 110.72462 * 263.83342 * 12 11 10 42 42 H 1.08993 * 109.47033 * 53.54246 * 15 13 12 43 43 H 1.09001 * 109.47098 * 173.54607 * 15 13 12 44 44 H 1.08998 * 109.47166 * 95.18307 * 17 16 15 45 45 H 1.08999 * 109.47489 * 215.18778 * 17 16 15 46 46 H 1.09006 * 109.47090 * 335.18446 * 17 16 15 47 47 H 0.97005 * 120.00722 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.36460 * 274.74831 * 26 10 8 49 49 H 1.08995 * 110.36634 * 37.06552 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4191 -1.3245 7 6 5.7246 -0.2351 -2.6642 8 6 7.2181 -0.4038 -2.7727 9 8 7.9372 -0.0365 -1.8678 10 7 7.7549 -0.9629 -3.8753 11 6 7.0035 -1.4496 -5.0416 12 6 8.0296 -2.0273 -6.0392 13 6 9.2497 -2.3482 -5.1359 14 1 9.1272 -3.3120 -4.6417 15 6 10.5517 -2.3082 -5.9384 16 7 10.5563 -3.3991 -6.9163 17 6 10.0096 -3.1824 -8.2581 18 6 11.0715 -4.6214 -6.5762 19 1 11.1246 -4.9152 -5.5382 20 6 11.5259 -5.4827 -7.5654 21 7 11.7289 -5.0344 -8.7860 22 14 11.8490 -7.2783 -7.1641 23 1 10.5944 -7.9120 -6.6851 24 1 12.3233 -7.9805 -8.3836 25 1 12.8857 -7.3700 -6.1048 26 6 9.1931 -1.1820 -4.1144 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1764 0.0889 34 1 5.8629 1.3949 -1.2622 35 1 5.7351 -0.2134 -0.5104 36 1 5.2429 -1.2109 -2.7261 37 1 5.3707 0.3971 -3.4786 38 1 6.3059 -2.2286 -4.7345 39 1 6.4591 -0.6252 -5.5022 40 1 7.6456 -2.9348 -6.5053 41 1 8.2929 -1.2865 -6.7941 42 1 10.6287 -1.3536 -6.4587 43 1 11.3990 -2.4229 -5.2622 44 1 10.8170 -2.9187 -8.9411 45 1 9.5241 -4.0948 -8.6044 46 1 9.2808 -2.3724 -8.2270 47 1 12.0468 -5.6361 -9.4772 48 1 9.6489 -0.2849 -4.5336 49 1 9.6928 -1.4650 -3.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692000305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:13 Heat of formation + Delta-G solvation = -126.839661 kcal Electronic energy + Delta-G solvation = -26082.117156 eV Core-core repulsion = 22237.418477 eV Total energy + Delta-G solvation = -3844.698680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18600 -39.50435 -38.94945 -38.10065 -37.05578 -34.05375 -33.14050 -31.96509 -30.66971 -30.32256 -27.92575 -27.33039 -27.05268 -25.06832 -23.51606 -23.49939 -22.90225 -21.19550 -20.12618 -18.68832 -18.43047 -17.87851 -17.44280 -17.43819 -16.93330 -16.70373 -16.37252 -16.17572 -15.94845 -15.49652 -15.43877 -15.03706 -14.71211 -14.53503 -14.28373 -14.09548 -13.72680 -13.61291 -13.40180 -13.16220 -12.87728 -12.75325 -12.66135 -12.56431 -12.50544 -12.43550 -12.22800 -12.13046 -11.96729 -11.94611 -11.72538 -11.59670 -11.35573 -11.01958 -10.66184 -10.60080 -10.59000 -9.67844 -8.71391 -7.79439 -5.27951 1.47410 1.48912 1.54116 1.55449 1.82396 2.52763 2.71313 2.87893 3.32389 3.45765 3.69242 3.75010 3.91064 3.97315 4.04170 4.13056 4.19894 4.24951 4.36505 4.42688 4.45170 4.47990 4.53139 4.58047 4.61011 4.62793 4.66520 4.71967 4.80026 4.83948 4.87169 4.88525 4.89034 4.97773 5.06076 5.13249 5.26521 5.31819 5.39043 5.52054 5.67322 5.77809 6.11878 6.27948 6.36506 6.49916 7.05599 7.19695 7.92834 8.35134 9.22387 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.001995 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.615550 B =14033.348424 C =14420.417983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.061 3.939 4 C 0.056 3.944 5 O -0.398 6.398 6 C 0.082 3.918 7 C -0.124 4.124 8 C 0.528 3.472 9 O -0.589 6.589 10 N -0.616 5.616 11 C 0.102 3.898 12 C -0.112 4.112 13 C -0.108 4.108 14 H 0.061 0.939 15 C 0.161 3.839 16 N -0.613 5.613 17 C 0.177 3.823 18 C -0.259 4.259 19 H 0.066 0.934 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.963 3.037 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.116 3.884 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.039 0.961 44 H -0.001 1.001 45 H 0.011 0.989 46 H 0.043 0.957 47 H 0.247 0.753 48 H 0.076 0.924 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.808 14.866 14.007 29.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.020 4.020 5 O -0.317 6.317 6 C 0.005 3.995 7 C -0.164 4.164 8 C 0.319 3.681 9 O -0.470 6.470 10 N -0.349 5.349 11 C -0.019 4.019 12 C -0.150 4.150 13 C -0.129 4.129 14 H 0.079 0.921 15 C 0.035 3.965 16 N -0.336 5.336 17 C 0.032 3.968 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.791 3.209 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.007 4.007 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.029 0.971 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.438 14.788 14.236 29.681 hybrid contribution 0.663 -1.024 0.088 1.223 sum -20.775 13.765 14.324 28.744 Atomic orbital electron populations 1.22903 0.79579 1.03614 1.00932 1.87924 1.21410 1.28763 1.95626 1.22714 0.91580 0.85014 1.02252 1.22745 0.94131 0.98470 0.86675 1.87834 1.21876 1.82697 1.39335 1.22021 0.81017 0.99941 0.96495 1.21383 0.90082 1.05061 0.99842 1.20554 0.91138 0.76312 0.80122 1.90685 1.64279 1.52295 1.39775 1.48636 1.08494 1.59712 1.18029 1.22271 0.94717 0.99843 0.85107 1.22567 0.94234 1.01242 0.96982 1.22889 0.97681 0.96696 0.95679 0.92059 1.20736 0.94280 0.90509 0.91013 1.44037 1.69622 1.09081 1.10853 1.20584 0.94346 0.96624 0.85274 1.19413 1.33803 0.93084 0.92673 0.91656 1.25713 1.00085 1.02533 0.96400 1.70216 1.50683 1.34702 1.02762 0.85411 0.77999 0.80910 0.76538 1.20599 1.22140 1.20418 1.22221 0.81654 0.98234 0.98625 0.92655 0.93313 0.89183 0.89325 0.91948 0.92733 0.89637 0.92504 0.93629 0.86945 0.85994 0.90104 0.88621 0.90669 0.90144 0.92707 0.94253 0.98299 0.97065 0.93867 0.94363 0.90603 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.61 10.67 -144.35 -1.54 -9.15 16 3 C 0.06 0.78 6.32 71.98 0.45 1.24 16 4 C 0.06 0.85 6.32 71.98 0.45 1.30 16 5 O -0.40 -8.14 10.31 -144.35 -1.49 -9.62 16 6 C 0.08 1.69 5.23 71.98 0.38 2.06 16 7 C -0.12 -2.37 5.26 29.85 0.16 -2.21 16 8 C 0.53 13.93 7.85 87.66 0.69 14.62 16 9 O -0.59 -20.04 16.24 -3.03 -0.05 -20.09 16 10 N -0.62 -15.61 3.32 -811.35 -2.70 -18.31 16 11 C 0.10 2.07 6.48 86.73 0.56 2.63 16 12 C -0.11 -2.90 5.02 31.78 0.16 -2.74 16 13 C -0.11 -3.39 3.31 -9.32 -0.03 -3.42 16 14 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.16 6.13 5.16 86.38 0.45 6.58 16 16 N -0.61 -29.39 2.84 -726.93 -2.06 -31.45 16 17 C 0.18 8.25 8.61 127.77 1.10 9.35 16 18 C -0.26 -14.01 9.64 84.03 0.81 -13.20 16 19 H 0.07 3.47 7.87 -2.91 -0.02 3.45 16 20 C -0.05 -2.91 5.07 84.86 0.43 -2.48 16 21 N -0.94 -55.14 10.81 21.65 0.23 -54.90 16 22 Si 0.96 45.10 29.58 68.60 2.03 47.13 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.12 3.29 6.38 86.93 0.55 3.85 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 1.99 7.15 -2.39 -0.02 1.97 16 42 H 0.05 1.90 8.04 -2.39 -0.02 1.89 16 43 H 0.04 1.56 8.04 -2.39 -0.02 1.54 16 44 H 0.00 -0.07 7.32 -2.39 -0.02 -0.09 16 45 H 0.01 0.55 7.40 -2.39 -0.02 0.53 16 46 H 0.04 1.63 6.16 -2.38 -0.01 1.61 16 47 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 48 H 0.08 2.04 8.04 -2.38 -0.02 2.02 16 49 H 0.06 1.90 8.03 -2.39 -0.02 1.88 16 Total: -1.00 -71.24 395.17 2.73 -68.51 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.89 Total: 8.78 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.41 Total: 19.11 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -4.53 Total: -104.66 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -3.08 Total: -38.86 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.24 2.73 -68.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692000305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.334 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds