Wall clock time and date at job start Tue Mar 31 2020 10:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99775 * 2 1 4 4 H 1.07995 * 120.00334 * 321.38137 * 3 2 1 5 5 C 1.38817 * 119.99653 * 141.38665 * 3 2 1 6 6 N 1.31618 * 119.99753 * 158.23031 * 5 3 2 7 7 Si 1.86794 * 119.99986 * 338.23283 * 5 3 2 8 8 H 1.48496 * 109.47534 * 95.63299 * 7 5 3 9 9 H 1.48500 * 109.47093 * 215.62999 * 7 5 3 10 10 H 1.48506 * 109.47287 * 335.63061 * 7 5 3 11 11 C 1.46504 * 119.99773 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47211 * 89.99790 * 11 2 1 13 13 O 1.42903 * 109.46905 * 64.99671 * 12 11 2 14 14 C 1.42908 * 113.99952 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47210 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47292 * 65.00120 * 15 14 13 17 17 C 1.46503 * 119.99896 * 269.99946 * 16 15 14 18 18 C 1.34776 * 120.00336 * 89.99713 * 16 15 14 19 19 O 1.21285 * 119.99470 * 0.02562 * 18 16 15 20 20 C 1.50696 * 120.00466 * 179.97438 * 18 16 15 21 21 C 1.53002 * 109.47154 * 180.02562 * 20 18 16 22 22 H 1.08998 * 109.81877 * 54.44189 * 21 20 18 23 23 C 1.54387 * 109.82867 * 175.41357 * 21 20 18 24 24 C 1.55561 * 102.27304 * 140.87015 * 23 21 20 25 25 C 1.54951 * 100.82855 * 325.88744 * 24 23 21 26 26 O 1.43229 * 109.83364 * 293.54993 * 21 20 18 27 27 H 1.09003 * 109.47133 * 265.61477 * 1 2 3 28 28 H 1.08999 * 109.47410 * 25.61286 * 1 2 3 29 29 H 1.08999 * 109.47177 * 145.61420 * 1 2 3 30 30 H 0.96998 * 120.00013 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46882 * 329.99653 * 11 2 1 32 32 H 1.08994 * 109.46773 * 209.99721 * 11 2 1 33 33 H 1.09005 * 109.47525 * 305.00048 * 12 11 2 34 34 H 1.08994 * 109.47432 * 184.99640 * 12 11 2 35 35 H 1.09000 * 109.46779 * 59.99849 * 14 13 12 36 36 H 1.09000 * 109.46868 * 300.00373 * 14 13 12 37 37 H 1.09003 * 109.47442 * 305.00001 * 15 14 13 38 38 H 1.09003 * 109.47400 * 185.00071 * 15 14 13 39 39 H 1.09000 * 109.47097 * 269.99945 * 17 16 15 40 40 H 1.09000 * 109.47186 * 30.00269 * 17 16 15 41 41 H 1.09008 * 109.47094 * 149.99906 * 17 16 15 42 42 H 1.09008 * 109.46634 * 60.00692 * 20 18 16 43 43 H 1.08992 * 109.47336 * 300.00660 * 20 18 16 44 44 H 1.08996 * 110.84985 * 259.06388 * 23 21 20 45 45 H 1.09004 * 110.84735 * 22.68625 * 23 21 20 46 46 H 1.09000 * 111.23119 * 207.98284 * 24 23 21 47 47 H 1.09009 * 111.13186 * 83.74541 * 24 23 21 48 48 H 1.08998 * 110.30624 * 277.47472 * 25 24 23 49 49 H 1.08999 * 110.31415 * 155.40859 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7868 2.0189 -0.5837 5 6 3.3102 1.3173 0.7503 6 7 4.1891 2.2484 0.4453 7 14 3.6246 0.1726 2.1925 8 1 4.4776 -0.9593 1.7495 9 1 4.3151 0.9185 3.2751 10 1 2.3309 -0.3514 2.6997 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 8 3.3209 -0.7716 -2.0817 14 6 3.6248 -1.0925 -3.4407 15 6 4.5567 -0.0265 -4.0203 16 7 5.8409 -0.0655 -3.3164 17 6 6.0460 0.7557 -2.1207 18 6 6.8336 -0.8570 -3.7687 19 8 6.6639 -1.5365 -4.7589 20 6 8.1548 -0.8967 -3.0450 21 6 9.0988 -1.8658 -3.7595 22 1 9.1825 -1.5923 -4.8113 23 6 10.4914 -1.8269 -3.0940 24 6 10.9131 -3.3240 -3.1217 25 6 9.5412 -4.0165 -2.9234 26 8 8.6009 -3.2037 -3.6434 27 1 -0.3633 -0.0786 1.0247 28 1 -0.3634 0.9267 -0.4442 29 1 -0.3633 -0.8481 -0.5804 30 1 4.9998 2.3405 0.9698 31 1 1.6084 -2.0286 0.5130 32 1 3.1499 -1.1387 0.5133 33 1 1.5061 -1.7541 -1.9823 34 1 2.9180 -2.6954 -1.4450 35 1 2.7029 -1.1244 -4.0214 36 1 4.1149 -2.0652 -3.4835 37 1 4.1045 0.9575 -3.8968 38 1 4.7175 -0.2220 -5.0806 39 1 6.4423 1.7285 -2.4117 40 1 5.0953 0.8902 -1.6048 41 1 6.7531 0.2594 -1.4559 42 1 7.9975 -1.2318 -2.0197 43 1 8.5953 0.1002 -3.0379 44 1 11.1829 -1.2184 -3.6767 45 1 10.4214 -1.4627 -2.0690 46 1 11.5932 -3.5577 -2.3026 47 1 11.3525 -3.5908 -4.0829 48 1 9.2824 -4.0471 -1.8650 49 1 9.5634 -5.0252 -3.3360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692298254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:14 Heat of formation + Delta-G solvation = -94.712826 kcal Electronic energy + Delta-G solvation = -28198.498482 eV Core-core repulsion = 24355.192927 eV Total energy + Delta-G solvation = -3843.305556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.03492 -38.86996 -37.39306 -35.59556 -34.73158 -32.47629 -31.83286 -31.52729 -30.03482 -28.34562 -26.73456 -26.03840 -25.65106 -22.90716 -22.70162 -21.90371 -21.04638 -20.61972 -18.67273 -17.12748 -16.81669 -16.66643 -16.10835 -15.90095 -15.69165 -15.36019 -15.11297 -14.66769 -14.27198 -13.90783 -13.72129 -13.45649 -13.34352 -12.95831 -12.81939 -12.63901 -12.36865 -12.07058 -11.90552 -11.83055 -11.82382 -11.56028 -11.51091 -11.39246 -11.24547 -11.19735 -11.00977 -10.97543 -10.66434 -10.61025 -10.34379 -9.75926 -9.53326 -9.52053 -9.37421 -8.80412 -8.40605 -8.15427 -6.72334 -5.89788 -3.29353 3.00717 3.34784 3.42009 3.49448 3.54628 3.80237 4.30448 4.42004 4.58060 4.60494 4.70557 4.90703 5.02426 5.08094 5.11342 5.30410 5.46101 5.47737 5.48317 5.51781 5.57240 5.61078 5.66064 5.71582 5.78453 5.81190 5.88743 5.95293 5.99775 6.04019 6.10153 6.12691 6.17793 6.29229 6.31034 6.34722 6.57033 6.72446 6.78085 6.81234 7.06776 7.10149 7.83493 8.02149 8.16447 8.46845 8.57648 9.05450 9.81151 10.21122 11.25700 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003845 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.584232 B = 7279.933379 C = 7770.620431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.608 5.608 3 C -0.246 4.246 4 H 0.075 0.925 5 C 0.044 3.956 6 N -0.898 5.898 7 Si 0.868 3.132 8 H -0.288 1.288 9 H -0.304 1.304 10 H -0.274 1.274 11 C 0.137 3.863 12 C 0.050 3.950 13 O -0.342 6.342 14 C 0.044 3.956 15 C 0.124 3.876 16 N -0.603 5.603 17 C 0.073 3.927 18 C 0.512 3.488 19 O -0.545 6.545 20 C -0.152 4.152 21 C 0.099 3.901 22 H 0.086 0.914 23 C -0.153 4.153 24 C -0.156 4.156 25 C 0.044 3.956 26 O -0.361 6.361 27 H 0.005 0.995 28 H 0.045 0.955 29 H 0.023 0.977 30 H 0.258 0.742 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.147 -8.001 -6.502 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.332 5.332 3 C -0.375 4.375 4 H 0.092 0.908 5 C -0.155 4.155 6 N -0.540 5.540 7 Si 0.700 3.300 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.199 1.199 11 C 0.011 3.989 12 C -0.030 4.030 13 O -0.260 6.260 14 C -0.035 4.035 15 C 0.001 3.999 16 N -0.335 5.335 17 C -0.069 4.069 18 C 0.300 3.700 19 O -0.423 6.423 20 C -0.192 4.192 21 C 0.040 3.960 22 H 0.104 0.896 23 C -0.191 4.191 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.280 6.280 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.036 -8.134 -6.950 14.669 hybrid contribution 0.367 -0.805 1.023 1.353 sum 10.403 -8.939 -5.926 14.942 Atomic orbital electron populations 1.21066 0.84760 0.98958 0.97217 1.43990 1.00573 1.02039 1.86622 1.18663 1.06223 0.90291 1.22327 0.90755 1.25297 0.96865 0.95927 0.97408 1.69861 1.09105 1.35591 1.39491 0.87066 0.77784 0.80460 0.84733 1.21614 1.23188 1.19909 1.21263 0.96801 0.88486 0.92398 1.23195 0.92177 0.90707 0.96897 1.88232 1.66757 1.48348 1.22645 1.22824 0.97166 0.97772 0.85705 1.21431 0.82560 1.00015 0.95885 1.47842 1.12844 1.43651 1.29172 1.22078 1.06297 0.92775 0.85760 1.20466 0.85625 0.79176 0.84685 1.90662 1.82532 1.42381 1.26775 1.22148 0.94364 1.01396 1.01325 1.22471 0.90806 0.83090 0.99603 0.89626 1.23265 0.96431 0.97215 1.02168 1.23300 0.98064 0.95029 1.02926 1.23394 0.87655 0.95431 0.96759 1.88625 1.43615 1.19785 1.75925 0.97660 0.93640 0.95789 0.93187 0.93055 0.92174 0.94627 0.95568 0.93616 0.94187 0.89359 0.89451 0.93313 0.86074 0.92547 0.88518 0.88099 0.89869 0.90167 0.90037 0.90426 0.92459 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.51 10.70 59.85 0.64 3.15 16 2 N -0.61 -14.45 2.44 -181.12 -0.44 -14.89 16 3 C -0.25 -6.69 9.39 -15.06 -0.14 -6.83 16 4 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 5 C 0.04 1.22 5.31 -17.43 -0.09 1.12 16 6 N -0.90 -25.13 13.42 55.49 0.74 -24.39 16 7 Si 0.87 21.79 25.05 -169.99 -4.26 17.53 16 8 H -0.29 -7.10 6.69 56.52 0.38 -6.72 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.14 2.98 4.95 -4.04 -0.02 2.96 16 12 C 0.05 0.98 6.28 37.16 0.23 1.22 16 13 O -0.34 -7.32 8.64 -35.23 -0.30 -7.63 16 14 C 0.04 0.79 6.28 37.15 0.23 1.03 16 15 C 0.12 2.14 5.81 -4.05 -0.02 2.11 16 16 N -0.60 -10.58 2.84 -181.57 -0.52 -11.10 16 17 C 0.07 1.31 10.06 59.85 0.60 1.91 16 18 C 0.51 8.85 7.57 -10.99 -0.08 8.76 16 19 O -0.55 -10.89 15.07 -6.86 -0.10 -10.99 16 20 C -0.15 -2.05 3.83 -27.88 -0.11 -2.15 16 21 C 0.10 1.25 3.04 -26.00 -0.08 1.17 16 22 H 0.09 1.14 7.95 -51.93 -0.41 0.73 16 23 C -0.15 -1.37 6.55 -24.64 -0.16 -1.53 16 24 C -0.16 -1.29 7.18 -24.34 -0.17 -1.47 16 25 C 0.04 0.48 7.77 38.19 0.30 0.78 16 26 O -0.36 -5.44 10.36 -47.64 -0.49 -5.93 16 27 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 29 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.06 1.45 3.37 -51.93 -0.18 1.27 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 38 H 0.09 1.41 7.42 -51.93 -0.39 1.03 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.12 2.71 6.56 -51.93 -0.34 2.37 16 41 H 0.06 0.92 6.44 -51.92 -0.33 0.59 16 42 H 0.10 1.30 7.40 -51.92 -0.38 0.92 16 43 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -32.27 386.72 -7.19 -39.46 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.77 Total: -0.12 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 1.12 Total: 12.23 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.21 Total: -50.37 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.90 Total: -24.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.26 Total: 17.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.27 -7.19 -39.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692298254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.251 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds