Wall clock time and date at job start Tue Mar 31 2020 10:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99775 * 2 1 4 4 H 1.07995 * 120.00334 * 321.38137 * 3 2 1 5 5 C 1.38817 * 119.99653 * 141.38665 * 3 2 1 6 6 N 1.31618 * 119.99753 * 158.23031 * 5 3 2 7 7 Si 1.86794 * 119.99986 * 338.23283 * 5 3 2 8 8 H 1.48496 * 109.47534 * 95.63299 * 7 5 3 9 9 H 1.48500 * 109.47093 * 215.62999 * 7 5 3 10 10 H 1.48506 * 109.47287 * 335.63061 * 7 5 3 11 11 C 1.46504 * 119.99773 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47211 * 89.99790 * 11 2 1 13 13 O 1.42903 * 109.46905 * 64.99671 * 12 11 2 14 14 C 1.42908 * 113.99952 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47210 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47292 * 65.00120 * 15 14 13 17 17 C 1.46503 * 119.99896 * 269.99946 * 16 15 14 18 18 C 1.34776 * 120.00336 * 89.99713 * 16 15 14 19 19 O 1.21285 * 119.99470 * 0.02562 * 18 16 15 20 20 C 1.50696 * 120.00466 * 179.97438 * 18 16 15 21 21 C 1.53002 * 109.47154 * 180.02562 * 20 18 16 22 22 H 1.08998 * 109.81877 * 54.44189 * 21 20 18 23 23 C 1.54387 * 109.82867 * 175.41357 * 21 20 18 24 24 C 1.55561 * 102.27304 * 140.87015 * 23 21 20 25 25 C 1.54951 * 100.82855 * 325.88744 * 24 23 21 26 26 O 1.43229 * 109.83364 * 293.54993 * 21 20 18 27 27 H 1.09003 * 109.47133 * 265.61477 * 1 2 3 28 28 H 1.08999 * 109.47410 * 25.61286 * 1 2 3 29 29 H 1.08999 * 109.47177 * 145.61420 * 1 2 3 30 30 H 0.96998 * 120.00013 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46882 * 329.99653 * 11 2 1 32 32 H 1.08994 * 109.46773 * 209.99721 * 11 2 1 33 33 H 1.09005 * 109.47525 * 305.00048 * 12 11 2 34 34 H 1.08994 * 109.47432 * 184.99640 * 12 11 2 35 35 H 1.09000 * 109.46779 * 59.99849 * 14 13 12 36 36 H 1.09000 * 109.46868 * 300.00373 * 14 13 12 37 37 H 1.09003 * 109.47442 * 305.00001 * 15 14 13 38 38 H 1.09003 * 109.47400 * 185.00071 * 15 14 13 39 39 H 1.09000 * 109.47097 * 269.99945 * 17 16 15 40 40 H 1.09000 * 109.47186 * 30.00269 * 17 16 15 41 41 H 1.09008 * 109.47094 * 149.99906 * 17 16 15 42 42 H 1.09008 * 109.46634 * 60.00692 * 20 18 16 43 43 H 1.08992 * 109.47336 * 300.00660 * 20 18 16 44 44 H 1.08996 * 110.84985 * 259.06388 * 23 21 20 45 45 H 1.09004 * 110.84735 * 22.68625 * 23 21 20 46 46 H 1.09000 * 111.23119 * 207.98284 * 24 23 21 47 47 H 1.09009 * 111.13186 * 83.74541 * 24 23 21 48 48 H 1.08998 * 110.30624 * 277.47472 * 25 24 23 49 49 H 1.08999 * 110.31415 * 155.40859 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7868 2.0189 -0.5837 5 6 3.3102 1.3173 0.7503 6 7 4.1891 2.2484 0.4453 7 14 3.6246 0.1726 2.1925 8 1 4.4776 -0.9593 1.7495 9 1 4.3151 0.9185 3.2751 10 1 2.3309 -0.3514 2.6997 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 8 3.3209 -0.7716 -2.0817 14 6 3.6248 -1.0925 -3.4407 15 6 4.5567 -0.0265 -4.0203 16 7 5.8409 -0.0655 -3.3164 17 6 6.0460 0.7557 -2.1207 18 6 6.8336 -0.8570 -3.7687 19 8 6.6639 -1.5365 -4.7589 20 6 8.1548 -0.8967 -3.0450 21 6 9.0988 -1.8658 -3.7595 22 1 9.1825 -1.5923 -4.8113 23 6 10.4914 -1.8269 -3.0940 24 6 10.9131 -3.3240 -3.1217 25 6 9.5412 -4.0165 -2.9234 26 8 8.6009 -3.2037 -3.6434 27 1 -0.3633 -0.0786 1.0247 28 1 -0.3634 0.9267 -0.4442 29 1 -0.3633 -0.8481 -0.5804 30 1 4.9998 2.3405 0.9698 31 1 1.6084 -2.0286 0.5130 32 1 3.1499 -1.1387 0.5133 33 1 1.5061 -1.7541 -1.9823 34 1 2.9180 -2.6954 -1.4450 35 1 2.7029 -1.1244 -4.0214 36 1 4.1149 -2.0652 -3.4835 37 1 4.1045 0.9575 -3.8968 38 1 4.7175 -0.2220 -5.0806 39 1 6.4423 1.7285 -2.4117 40 1 5.0953 0.8902 -1.6048 41 1 6.7531 0.2594 -1.4559 42 1 7.9975 -1.2318 -2.0197 43 1 8.5953 0.1002 -3.0379 44 1 11.1829 -1.2184 -3.6767 45 1 10.4214 -1.4627 -2.0690 46 1 11.5932 -3.5577 -2.3026 47 1 11.3525 -3.5908 -4.0829 48 1 9.2824 -4.0471 -1.8650 49 1 9.5634 -5.0252 -3.3360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692298254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:13 Heat of formation + Delta-G solvation = -115.306929 kcal Electronic energy + Delta-G solvation = -28199.391509 eV Core-core repulsion = 24355.192927 eV Total energy + Delta-G solvation = -3844.198583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21690 -39.98691 -38.97551 -37.28918 -36.25591 -33.62229 -33.44346 -32.73003 -31.44817 -29.88094 -27.90416 -27.82108 -27.00113 -24.57746 -24.05454 -22.71132 -22.43851 -22.03488 -19.99001 -18.67763 -18.24507 -17.95656 -17.59788 -17.26669 -16.95103 -16.77933 -16.51938 -16.22872 -15.54905 -15.36695 -15.18325 -14.86455 -14.59063 -14.42314 -14.30491 -13.96912 -13.78901 -13.63173 -13.45010 -13.16906 -13.04595 -12.98673 -12.76922 -12.69797 -12.59814 -12.45365 -12.27420 -12.14090 -12.08313 -12.03522 -11.69994 -11.67752 -11.44770 -10.77745 -10.49663 -10.48003 -10.31122 -9.59041 -8.61602 -7.99499 -5.36812 1.35875 1.46346 1.54487 1.66397 2.10148 2.54607 2.92213 2.94300 3.19230 3.53140 3.57642 3.63662 3.82099 3.98963 4.11383 4.16172 4.19780 4.25069 4.31467 4.38623 4.43021 4.47244 4.50024 4.54587 4.54859 4.62173 4.67426 4.75987 4.77665 4.78668 4.81576 4.87952 4.91215 4.94984 4.98442 5.05871 5.13226 5.15666 5.28620 5.31482 5.61103 6.10607 6.18813 6.32234 6.44574 6.57070 7.13301 7.21413 7.78524 8.21241 9.18749 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003845 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.584232 B = 7279.933379 C = 7770.620431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.622 5.622 3 C -0.243 4.243 4 H 0.036 0.964 5 C 0.009 3.991 6 N -0.924 5.924 7 Si 0.922 3.078 8 H -0.283 1.283 9 H -0.311 1.311 10 H -0.271 1.271 11 C 0.131 3.869 12 C 0.051 3.949 13 O -0.371 6.371 14 C 0.049 3.951 15 C 0.124 3.876 16 N -0.606 5.606 17 C 0.085 3.915 18 C 0.507 3.493 19 O -0.576 6.576 20 C -0.147 4.147 21 C 0.093 3.907 22 H 0.072 0.928 23 C -0.145 4.145 24 C -0.147 4.147 25 C 0.033 3.967 26 O -0.400 6.400 27 H 0.014 0.986 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.259 0.741 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.058 0.942 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.106 -9.348 -5.979 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.346 5.346 3 C -0.373 4.373 4 H 0.053 0.947 5 C -0.189 4.189 6 N -0.568 5.568 7 Si 0.753 3.247 8 H -0.210 1.210 9 H -0.239 1.239 10 H -0.196 1.196 11 C 0.006 3.994 12 C -0.028 4.028 13 O -0.290 6.290 14 C -0.029 4.029 15 C 0.000 4.000 16 N -0.338 5.338 17 C -0.058 4.058 18 C 0.297 3.703 19 O -0.457 6.457 20 C -0.187 4.187 21 C 0.035 3.965 22 H 0.090 0.910 23 C -0.183 4.183 24 C -0.184 4.184 25 C -0.043 4.043 26 O -0.320 6.320 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.978 -9.502 -6.419 15.875 hybrid contribution -0.005 -0.392 0.785 0.877 sum 10.973 -9.894 -5.635 15.813 Atomic orbital electron populations 1.21159 0.82604 1.00071 0.98184 1.44113 1.02029 1.01587 1.86913 1.18427 1.06522 0.90811 1.21512 0.94656 1.25668 0.96817 0.97393 0.99018 1.69951 1.09519 1.37147 1.40199 0.86207 0.77621 0.79032 0.81853 1.21050 1.23949 1.19569 1.21364 0.95977 0.88337 0.93734 1.23159 0.92842 0.91069 0.95759 1.88208 1.67265 1.49353 1.24158 1.22849 0.97970 0.97393 0.84692 1.21434 0.82662 0.99495 0.96363 1.47934 1.13123 1.43740 1.28985 1.21868 1.04333 0.93739 0.85826 1.21148 0.86605 0.78146 0.84406 1.90640 1.83233 1.43495 1.28297 1.22226 0.92483 1.03289 1.00709 1.22558 0.92586 0.82108 0.99226 0.90965 1.23260 0.94288 0.98095 1.02614 1.23292 0.96883 0.94047 1.04173 1.23613 0.88588 0.95613 0.96477 1.88582 1.45664 1.21159 1.76627 0.96812 0.94197 0.92739 0.93194 0.90060 0.94564 0.93267 0.93748 0.91884 0.95024 0.90018 0.88537 0.92059 0.90184 0.91163 0.88384 0.85418 0.87886 0.89201 0.87762 0.89860 0.92354 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.73 10.70 127.77 1.37 6.10 16 2 N -0.62 -28.86 2.44 -726.93 -1.77 -30.63 16 3 C -0.24 -13.34 9.39 84.03 0.79 -12.55 16 4 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 5 C 0.01 0.47 5.31 84.86 0.45 0.92 16 6 N -0.92 -52.61 13.42 21.65 0.29 -52.32 16 7 Si 0.92 44.91 25.05 68.60 1.72 46.62 16 8 H -0.28 -13.39 6.69 99.48 0.67 -12.73 16 9 H -0.31 -15.32 7.11 99.48 0.71 -14.62 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 C 0.13 5.47 4.95 86.38 0.43 5.90 16 12 C 0.05 1.92 6.28 71.98 0.45 2.37 16 13 O -0.37 -15.80 8.64 -148.98 -1.29 -17.08 16 14 C 0.05 1.76 6.28 71.98 0.45 2.21 16 15 C 0.12 4.29 5.81 86.38 0.50 4.79 16 16 N -0.61 -21.26 2.84 -846.75 -2.40 -23.66 16 17 C 0.08 3.04 10.06 127.77 1.29 4.33 16 18 C 0.51 17.38 7.57 87.66 0.66 18.04 16 19 O -0.58 -23.20 15.07 8.82 0.13 -23.07 16 20 C -0.15 -3.78 3.83 29.85 0.11 -3.67 16 21 C 0.09 2.26 3.04 31.07 0.09 2.36 16 22 H 0.07 1.90 7.95 -2.39 -0.02 1.88 16 23 C -0.15 -2.22 6.55 31.95 0.21 -2.01 16 24 C -0.15 -2.06 7.18 32.14 0.23 -1.83 16 25 C 0.03 0.68 7.77 72.65 0.56 1.24 16 26 O -0.40 -11.94 10.36 -137.12 -1.42 -13.36 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 29 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.28 16 31 H 0.08 2.86 8.07 -2.39 -0.02 2.85 16 32 H 0.04 1.69 3.37 -2.39 -0.01 1.69 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 38 H 0.10 3.14 7.42 -2.39 -0.02 3.13 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 3.65 6.56 -2.39 -0.02 3.63 16 41 H 0.07 2.26 6.44 -2.38 -0.02 2.24 16 42 H 0.10 2.51 7.40 -2.38 -0.02 2.49 16 43 H 0.13 2.53 8.11 -2.39 -0.02 2.51 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 1.22 7.85 -2.38 -0.02 1.20 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.64 386.72 3.72 -66.92 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.86 Total: 18.37 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 7.60 Total: 28.21 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.89 Total: -106.61 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -2.57 Total: -53.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.72 Total: 46.62 kcal Total: -70.64 3.72 -66.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692298254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.387 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds