Wall clock time and date at job start Tue Mar 31 2020 10:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 119.99912 * 2 1 4 4 H 1.08006 * 120.00006 * 202.91195 * 3 2 1 5 5 C 1.38809 * 120.00044 * 22.90244 * 3 2 1 6 6 N 1.31615 * 119.99939 * 13.14732 * 5 3 2 7 7 Si 1.86805 * 119.99821 * 193.14005 * 5 3 2 8 8 H 1.48502 * 109.47007 * 60.00324 * 7 5 3 9 9 H 1.48498 * 109.46744 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47014 * 300.00210 * 7 5 3 11 11 C 1.46500 * 120.00141 * 179.97438 * 2 1 3 12 12 C 1.53010 * 109.46811 * 90.00644 * 11 2 1 13 13 O 1.42898 * 109.46985 * 64.99874 * 12 11 2 14 14 C 1.42901 * 113.99942 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47257 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46901 * 65.00092 * 15 14 13 17 17 C 1.46499 * 119.99878 * 269.99966 * 16 15 14 18 18 C 1.34782 * 120.00037 * 89.99630 * 16 15 14 19 19 O 1.21286 * 120.00002 * 0.02562 * 18 16 15 20 20 C 1.50697 * 120.00015 * 179.97438 * 18 16 15 21 21 C 1.53001 * 109.47179 * 180.02562 * 20 18 16 22 22 H 1.08998 * 110.67173 * 303.49131 * 21 20 18 23 23 C 1.54994 * 110.61533 * 180.52943 * 21 20 18 24 24 C 1.54818 * 102.09001 * 204.47438 * 23 21 20 25 25 C 1.54105 * 104.18736 * 20.87963 * 24 23 21 26 26 O 1.43749 * 107.29231 * 2.02984 * 25 24 23 27 27 H 1.09000 * 109.47599 * 275.13315 * 1 2 3 28 28 H 1.09003 * 109.47266 * 35.13318 * 1 2 3 29 29 H 1.09001 * 109.47046 * 155.12762 * 1 2 3 30 30 H 0.96998 * 119.99723 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47325 * 330.00980 * 11 2 1 32 32 H 1.09004 * 109.47695 * 210.00320 * 11 2 1 33 33 H 1.08996 * 109.47027 * 305.00363 * 12 11 2 34 34 H 1.09001 * 109.46984 * 185.00075 * 12 11 2 35 35 H 1.08997 * 109.47267 * 60.00146 * 14 13 12 36 36 H 1.09006 * 109.46916 * 300.00270 * 14 13 12 37 37 H 1.08997 * 109.47408 * 305.00012 * 15 14 13 38 38 H 1.08996 * 109.47145 * 184.99711 * 15 14 13 39 39 H 1.08999 * 109.46907 * 269.99832 * 17 16 15 40 40 H 1.08994 * 109.47352 * 30.00221 * 17 16 15 41 41 H 1.08999 * 109.46656 * 150.00208 * 17 16 15 42 42 H 1.09002 * 109.46774 * 60.00375 * 20 18 16 43 43 H 1.08995 * 109.47511 * 300.00660 * 20 18 16 44 44 H 1.09000 * 110.90875 * 86.27921 * 23 21 20 45 45 H 1.08995 * 110.94142 * 322.68454 * 23 21 20 46 46 H 1.09000 * 110.49009 * 262.20682 * 24 23 21 47 47 H 1.08999 * 110.60254 * 139.60974 * 24 23 21 48 48 H 1.08999 * 109.88147 * 242.60778 * 25 24 23 49 49 H 1.08995 * 110.00509 * 121.52160 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1657 1.2228 -0.3641 5 6 1.5376 2.3407 0.4678 6 7 0.4115 2.2608 1.1444 7 14 2.3125 4.0080 0.1372 8 1 2.4145 4.2246 -1.3283 9 1 1.4700 5.0731 0.7381 10 1 3.6690 4.0515 0.7397 11 6 2.1974 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4419 13 8 3.3210 -0.7732 -2.0810 14 6 3.6241 -1.0945 -3.4400 15 6 4.5552 -0.0282 -4.0207 16 7 5.8399 -0.0664 -3.3176 17 6 6.0454 0.7554 -2.1223 18 6 6.8327 -0.8576 -3.7703 19 8 6.6626 -1.5377 -4.7600 20 6 8.1543 -0.8965 -3.0473 21 6 9.0983 -1.8655 -3.7621 22 1 8.6500 -2.8564 -3.8344 23 6 10.4635 -1.9360 -3.0316 24 6 11.4151 -2.3890 -4.1657 25 6 10.6668 -2.0129 -5.4594 26 8 9.4426 -1.3664 -5.0723 27 1 -0.3634 0.0919 1.0235 28 1 -0.3634 0.8405 -0.5914 29 1 -0.3633 -0.9324 -0.4322 30 1 -0.0163 3.0678 1.4710 31 1 1.6083 -2.0282 0.5146 32 1 3.1499 -1.1382 0.5144 33 1 1.5063 -1.7556 -1.9809 34 1 2.9182 -2.6965 -1.4428 35 1 2.7020 -1.1261 -4.0203 36 1 4.1139 -2.0674 -3.4828 37 1 4.1026 0.9556 -3.8973 38 1 4.7153 -0.2241 -5.0809 39 1 6.4411 1.7282 -2.4140 40 1 5.0950 0.8897 -1.6058 41 1 6.7531 0.2596 -1.4579 42 1 7.9978 -1.2311 -2.0219 43 1 8.5944 0.1006 -3.0409 44 1 10.4374 -2.6724 -2.2284 45 1 10.7520 -0.9567 -2.6497 46 1 11.5790 -3.4656 -4.1191 47 1 12.3643 -1.8565 -4.1056 48 1 10.4453 -2.9121 -6.0342 49 1 11.2731 -1.3316 -6.0562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692298255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:17 Heat of formation + Delta-G solvation = -101.227343 kcal Electronic energy + Delta-G solvation = -27430.156578 eV Core-core repulsion = 23586.568532 eV Total energy + Delta-G solvation = -3843.588046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.18546 -39.06723 -37.48174 -35.56214 -34.87768 -32.65152 -32.03997 -31.43676 -29.89962 -27.98285 -26.95854 -25.99214 -25.73783 -23.13392 -22.95287 -21.88945 -21.30723 -20.26613 -18.99303 -17.19947 -16.80303 -16.65706 -16.34639 -15.95994 -15.70554 -15.52181 -15.24741 -15.05122 -14.40217 -13.98436 -13.82791 -13.55744 -13.20156 -12.97256 -12.88096 -12.65315 -12.37683 -12.27884 -12.11951 -12.00956 -11.94239 -11.62870 -11.46498 -11.33664 -11.26091 -10.96722 -10.95399 -10.79291 -10.74174 -10.38695 -10.26459 -9.88011 -9.78409 -9.74089 -9.63448 -8.95374 -8.47109 -8.43398 -6.63726 -5.61185 -3.05993 2.76425 3.12165 3.43166 3.49279 3.49902 3.65597 4.26117 4.27204 4.37287 4.58397 4.61940 4.69701 4.85497 4.96762 5.14798 5.21671 5.27383 5.36667 5.42432 5.46202 5.49278 5.50487 5.51043 5.57241 5.59965 5.68492 5.71821 5.74370 5.81108 5.85413 5.95941 6.03020 6.13191 6.15887 6.27228 6.45918 6.65928 6.76883 6.77084 6.85784 7.42823 7.52857 7.78631 7.86382 7.97432 8.31301 8.52007 9.35292 9.98196 10.47777 11.44549 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002955 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.916975 B = 9472.259972 C =10095.695783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.230 4.230 4 H 0.072 0.928 5 C -0.007 4.007 6 N -0.915 5.915 7 Si 0.901 3.099 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.284 1.284 11 C 0.152 3.848 12 C 0.045 3.955 13 O -0.359 6.359 14 C 0.046 3.954 15 C 0.121 3.879 16 N -0.606 5.606 17 C 0.075 3.925 18 C 0.513 3.487 19 O -0.539 6.539 20 C -0.135 4.135 21 C 0.094 3.906 22 H 0.076 0.924 23 C -0.152 4.152 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.361 6.361 27 H 0.031 0.969 28 H 0.040 0.960 29 H -0.006 1.006 30 H 0.250 0.750 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.026 0.974 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.041 -8.898 -8.353 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.360 4.360 4 H 0.090 0.910 5 C -0.204 4.204 6 N -0.562 5.562 7 Si 0.732 3.268 8 H -0.212 1.212 9 H -0.219 1.219 10 H -0.210 1.210 11 C 0.024 3.976 12 C -0.034 4.034 13 O -0.277 6.277 14 C -0.033 4.033 15 C -0.002 4.002 16 N -0.339 5.339 17 C -0.068 4.068 18 C 0.301 3.699 19 O -0.416 6.416 20 C -0.175 4.175 21 C 0.036 3.964 22 H 0.094 0.906 23 C -0.190 4.190 24 C -0.194 4.194 25 C -0.032 4.032 26 O -0.280 6.280 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.772 -8.776 -8.814 21.692 hybrid contribution 0.277 0.604 -0.139 0.679 sum 18.049 -8.173 -8.953 21.742 Atomic orbital electron populations 1.20787 0.82902 0.95178 0.99365 1.43839 1.01589 1.00756 1.85771 1.19183 0.98155 0.85151 1.33551 0.91027 1.25015 0.98120 0.98359 0.98865 1.70054 1.19751 1.26937 1.39414 0.86380 0.78357 0.84232 0.77846 1.21248 1.21944 1.21047 1.20763 0.96545 0.89159 0.91174 1.23452 0.91906 0.90362 0.97729 1.88048 1.67212 1.49512 1.22961 1.22802 0.97347 0.97538 0.85567 1.21506 0.82243 1.00106 0.96351 1.47777 1.13149 1.43920 1.29032 1.21941 1.04510 0.93816 0.86509 1.20483 0.85306 0.79401 0.84692 1.90691 1.82173 1.42566 1.26158 1.21774 0.93254 1.02221 1.00230 1.22841 0.93634 0.97109 0.82806 0.90587 1.23206 0.94730 1.02773 0.98304 1.22928 0.99533 1.02025 0.94872 1.23115 0.86026 0.97656 0.96389 1.88993 1.39989 1.65546 1.33482 0.95120 0.94150 0.98759 0.93986 0.93169 0.92828 0.94557 0.95543 0.93254 0.94089 0.89412 0.89077 0.93031 0.88500 0.91535 0.87424 0.88145 0.89986 0.90223 0.90733 0.90530 0.92567 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.98 59.84 0.54 4.58 16 2 N -0.60 -15.00 2.90 -181.12 -0.53 -15.53 16 3 C -0.23 -6.25 9.21 -15.06 -0.14 -6.39 16 4 H 0.07 1.90 7.27 -52.48 -0.38 1.52 16 5 C -0.01 -0.19 5.10 -17.43 -0.09 -0.28 16 6 N -0.92 -26.93 10.71 55.49 0.59 -26.33 16 7 Si 0.90 21.84 29.57 -169.99 -5.03 16.81 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.15 3.10 6.07 -4.04 -0.02 3.08 16 12 C 0.05 0.82 6.28 37.16 0.23 1.05 16 13 O -0.36 -6.72 8.40 -35.23 -0.30 -7.02 16 14 C 0.05 0.73 6.28 37.16 0.23 0.96 16 15 C 0.12 1.79 5.81 -4.04 -0.02 1.77 16 16 N -0.61 -8.63 2.84 -181.58 -0.52 -9.15 16 17 C 0.08 0.96 10.06 59.85 0.60 1.56 16 18 C 0.51 7.44 7.58 -10.98 -0.08 7.35 16 19 O -0.54 -9.59 15.14 -5.83 -0.09 -9.67 16 20 C -0.14 -1.43 4.03 -27.88 -0.11 -1.54 16 21 C 0.09 1.01 2.79 -25.68 -0.07 0.94 16 22 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 23 C -0.15 -1.14 6.59 -24.72 -0.16 -1.30 16 24 C -0.16 -1.08 7.01 -25.20 -0.18 -1.26 16 25 C 0.05 0.42 7.70 37.73 0.29 0.71 16 26 O -0.36 -4.70 10.61 -46.62 -0.49 -5.19 16 27 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 28 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 29 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.05 1.10 8.04 -51.93 -0.42 0.69 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.30 8.07 -51.93 -0.42 0.89 16 38 H 0.09 1.32 7.42 -51.93 -0.39 0.94 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.52 6.81 -51.93 -0.35 1.17 16 41 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 42 H 0.11 0.91 7.40 -51.93 -0.38 0.53 16 43 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -33.66 391.18 -8.34 -42.00 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.89 Total: -3.04 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 1.01 Total: 11.22 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.45 Total: -51.01 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.88 Total: -21.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.66 -8.34 -42.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692298255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.228 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds