Wall clock time and date at job start Tue Mar 31 2020 10:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 119.99912 * 2 1 4 4 H 1.08006 * 120.00006 * 202.91195 * 3 2 1 5 5 C 1.38809 * 120.00044 * 22.90244 * 3 2 1 6 6 N 1.31615 * 119.99939 * 13.14732 * 5 3 2 7 7 Si 1.86805 * 119.99821 * 193.14005 * 5 3 2 8 8 H 1.48502 * 109.47007 * 60.00324 * 7 5 3 9 9 H 1.48498 * 109.46744 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47014 * 300.00210 * 7 5 3 11 11 C 1.46500 * 120.00141 * 179.97438 * 2 1 3 12 12 C 1.53010 * 109.46811 * 90.00644 * 11 2 1 13 13 O 1.42898 * 109.46985 * 64.99874 * 12 11 2 14 14 C 1.42901 * 113.99942 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47257 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46901 * 65.00092 * 15 14 13 17 17 C 1.46499 * 119.99878 * 269.99966 * 16 15 14 18 18 C 1.34782 * 120.00037 * 89.99630 * 16 15 14 19 19 O 1.21286 * 120.00002 * 0.02562 * 18 16 15 20 20 C 1.50697 * 120.00015 * 179.97438 * 18 16 15 21 21 C 1.53001 * 109.47179 * 180.02562 * 20 18 16 22 22 H 1.08998 * 110.67173 * 303.49131 * 21 20 18 23 23 C 1.54994 * 110.61533 * 180.52943 * 21 20 18 24 24 C 1.54818 * 102.09001 * 204.47438 * 23 21 20 25 25 C 1.54105 * 104.18736 * 20.87963 * 24 23 21 26 26 O 1.43749 * 107.29231 * 2.02984 * 25 24 23 27 27 H 1.09000 * 109.47599 * 275.13315 * 1 2 3 28 28 H 1.09003 * 109.47266 * 35.13318 * 1 2 3 29 29 H 1.09001 * 109.47046 * 155.12762 * 1 2 3 30 30 H 0.96998 * 119.99723 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47325 * 330.00980 * 11 2 1 32 32 H 1.09004 * 109.47695 * 210.00320 * 11 2 1 33 33 H 1.08996 * 109.47027 * 305.00363 * 12 11 2 34 34 H 1.09001 * 109.46984 * 185.00075 * 12 11 2 35 35 H 1.08997 * 109.47267 * 60.00146 * 14 13 12 36 36 H 1.09006 * 109.46916 * 300.00270 * 14 13 12 37 37 H 1.08997 * 109.47408 * 305.00012 * 15 14 13 38 38 H 1.08996 * 109.47145 * 184.99711 * 15 14 13 39 39 H 1.08999 * 109.46907 * 269.99832 * 17 16 15 40 40 H 1.08994 * 109.47352 * 30.00221 * 17 16 15 41 41 H 1.08999 * 109.46656 * 150.00208 * 17 16 15 42 42 H 1.09002 * 109.46774 * 60.00375 * 20 18 16 43 43 H 1.08995 * 109.47511 * 300.00660 * 20 18 16 44 44 H 1.09000 * 110.90875 * 86.27921 * 23 21 20 45 45 H 1.08995 * 110.94142 * 322.68454 * 23 21 20 46 46 H 1.09000 * 110.49009 * 262.20682 * 24 23 21 47 47 H 1.08999 * 110.60254 * 139.60974 * 24 23 21 48 48 H 1.08999 * 109.88147 * 242.60778 * 25 24 23 49 49 H 1.08995 * 110.00509 * 121.52160 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1657 1.2228 -0.3641 5 6 1.5376 2.3407 0.4678 6 7 0.4115 2.2608 1.1444 7 14 2.3125 4.0080 0.1372 8 1 2.4145 4.2246 -1.3283 9 1 1.4700 5.0731 0.7381 10 1 3.6690 4.0515 0.7397 11 6 2.1974 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4419 13 8 3.3210 -0.7732 -2.0810 14 6 3.6241 -1.0945 -3.4400 15 6 4.5552 -0.0282 -4.0207 16 7 5.8399 -0.0664 -3.3176 17 6 6.0454 0.7554 -2.1223 18 6 6.8327 -0.8576 -3.7703 19 8 6.6626 -1.5377 -4.7600 20 6 8.1543 -0.8965 -3.0473 21 6 9.0983 -1.8655 -3.7621 22 1 8.6500 -2.8564 -3.8344 23 6 10.4635 -1.9360 -3.0316 24 6 11.4151 -2.3890 -4.1657 25 6 10.6668 -2.0129 -5.4594 26 8 9.4426 -1.3664 -5.0723 27 1 -0.3634 0.0919 1.0235 28 1 -0.3634 0.8405 -0.5914 29 1 -0.3633 -0.9324 -0.4322 30 1 -0.0163 3.0678 1.4710 31 1 1.6083 -2.0282 0.5146 32 1 3.1499 -1.1382 0.5144 33 1 1.5063 -1.7556 -1.9809 34 1 2.9182 -2.6965 -1.4428 35 1 2.7020 -1.1261 -4.0203 36 1 4.1139 -2.0674 -3.4828 37 1 4.1026 0.9556 -3.8973 38 1 4.7153 -0.2241 -5.0809 39 1 6.4411 1.7282 -2.4140 40 1 5.0950 0.8897 -1.6058 41 1 6.7531 0.2596 -1.4579 42 1 7.9978 -1.2311 -2.0219 43 1 8.5944 0.1006 -3.0409 44 1 10.4374 -2.6724 -2.2284 45 1 10.7520 -0.9567 -2.6497 46 1 11.5790 -3.4656 -4.1191 47 1 12.3643 -1.8565 -4.1056 48 1 10.4453 -2.9121 -6.0342 49 1 11.2731 -1.3316 -6.0562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692298255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:16 Heat of formation + Delta-G solvation = -122.236615 kcal Electronic energy + Delta-G solvation = -27431.067608 eV Core-core repulsion = 23586.568532 eV Total energy + Delta-G solvation = -3844.499077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17851 -39.96556 -38.91641 -37.19670 -36.29206 -33.61610 -33.29089 -32.70569 -31.19384 -29.56712 -27.88651 -27.76967 -26.99798 -24.85124 -24.10706 -22.66289 -22.06295 -22.02803 -20.06486 -18.64282 -18.20770 -17.69622 -17.52632 -17.14179 -16.96469 -16.68082 -16.41839 -16.19286 -15.83948 -15.35642 -15.24986 -14.83439 -14.61129 -14.24291 -14.15327 -13.81217 -13.59716 -13.44935 -13.23111 -13.09745 -12.98025 -12.79685 -12.64158 -12.60089 -12.58605 -12.50425 -12.16786 -12.11794 -12.10225 -11.99070 -11.78672 -11.69672 -11.51700 -10.79973 -10.57618 -10.51813 -10.35135 -9.61745 -8.66889 -7.70978 -5.17812 1.50367 1.53855 1.59278 1.67594 2.06366 2.59651 2.91308 2.94518 3.43454 3.55720 3.64430 3.77778 3.88873 4.05072 4.12966 4.15143 4.17767 4.25293 4.35044 4.39261 4.48851 4.52252 4.55429 4.60282 4.62553 4.65548 4.72218 4.73949 4.85188 4.86648 4.89427 4.90828 4.95065 4.97605 5.11402 5.12867 5.18780 5.25504 5.40613 5.53018 5.73457 5.84432 6.03976 6.38169 6.47148 6.54001 7.21307 7.26880 7.98569 8.42551 9.33064 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002955 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.916975 B = 9472.259972 C =10095.695783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.614 5.614 3 C -0.227 4.227 4 H 0.077 0.923 5 C -0.065 4.065 6 N -0.949 5.949 7 Si 0.961 3.039 8 H -0.282 1.282 9 H -0.303 1.303 10 H -0.269 1.269 11 C 0.149 3.851 12 C 0.053 3.947 13 O -0.378 6.378 14 C 0.051 3.949 15 C 0.121 3.879 16 N -0.608 5.608 17 C 0.077 3.923 18 C 0.507 3.493 19 O -0.579 6.579 20 C -0.129 4.129 21 C 0.087 3.913 22 H 0.058 0.942 23 C -0.144 4.144 24 C -0.150 4.150 25 C 0.035 3.965 26 O -0.397 6.397 27 H 0.005 0.995 28 H 0.011 0.989 29 H 0.028 0.972 30 H 0.243 0.757 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.413 -9.392 -8.115 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.358 4.358 4 H 0.094 0.906 5 C -0.258 4.258 6 N -0.598 5.598 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.026 4.026 13 O -0.297 6.297 14 C -0.027 4.027 15 C -0.002 4.002 16 N -0.340 5.340 17 C -0.065 4.065 18 C 0.297 3.703 19 O -0.459 6.459 20 C -0.168 4.168 21 C 0.029 3.971 22 H 0.076 0.924 23 C -0.181 4.181 24 C -0.188 4.188 25 C -0.041 4.041 26 O -0.317 6.317 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.151 0.849 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.182 -9.296 -8.576 23.817 hybrid contribution -0.450 0.662 -0.273 0.845 sum 19.732 -8.635 -8.848 23.285 Atomic orbital electron populations 1.20521 0.83214 0.95586 0.97543 1.44099 1.01796 1.01945 1.85912 1.19486 0.98244 0.86070 1.31967 0.90581 1.25752 0.98939 1.01670 0.99485 1.70231 1.21317 1.27097 1.41116 0.85409 0.77930 0.79985 0.77622 1.20863 1.22944 1.19497 1.20961 0.96167 0.87701 0.92922 1.23233 0.92133 0.91375 0.95852 1.88018 1.67276 1.50150 1.24283 1.22817 0.97761 0.97704 0.84381 1.21434 0.82731 0.99595 0.96452 1.47900 1.12850 1.44002 1.29283 1.21983 1.03633 0.94796 0.86137 1.21202 0.86388 0.78410 0.84331 1.90669 1.83019 1.44174 1.28048 1.21858 0.90849 1.03304 1.00834 1.22937 0.95345 0.96100 0.82727 0.92426 1.23193 0.92477 1.03986 0.98491 1.22932 0.99729 1.02935 0.93205 1.23309 0.85414 0.97586 0.97832 1.88953 1.41639 1.66294 1.34828 0.97637 0.97059 0.95381 0.94817 0.91193 0.93104 0.94948 0.92684 0.92714 0.94255 0.89709 0.89113 0.91534 0.91404 0.88893 0.84888 0.86566 0.88267 0.89159 0.89726 0.88871 0.93050 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 8.98 127.77 1.15 9.93 16 2 N -0.61 -30.49 2.90 -726.93 -2.11 -32.60 16 3 C -0.23 -12.24 9.21 84.03 0.77 -11.46 16 4 H 0.08 3.97 7.27 -2.91 -0.02 3.95 16 5 C -0.07 -3.66 5.10 84.86 0.43 -3.23 16 6 N -0.95 -56.85 10.71 21.65 0.23 -56.62 16 7 Si 0.96 45.01 29.57 68.60 2.03 47.04 16 8 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 9 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 C 0.15 5.82 6.07 86.38 0.52 6.35 16 12 C 0.05 1.81 6.28 71.99 0.45 2.27 16 13 O -0.38 -13.65 8.40 -148.98 -1.25 -14.90 16 14 C 0.05 1.58 6.28 71.98 0.45 2.04 16 15 C 0.12 3.53 5.81 86.38 0.50 4.03 16 16 N -0.61 -16.57 2.84 -846.76 -2.40 -18.98 16 17 C 0.08 1.81 10.06 127.77 1.29 3.09 16 18 C 0.51 14.15 7.58 87.66 0.66 14.81 16 19 O -0.58 -20.66 15.14 7.84 0.12 -20.54 16 20 C -0.13 -2.45 4.03 29.85 0.12 -2.33 16 21 C 0.09 1.74 2.79 31.28 0.09 1.82 16 22 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 23 C -0.14 -1.74 6.59 31.90 0.21 -1.53 16 24 C -0.15 -1.71 7.01 31.59 0.22 -1.49 16 25 C 0.04 0.61 7.70 72.36 0.56 1.17 16 26 O -0.40 -10.11 10.61 -138.09 -1.47 -11.58 16 27 H 0.01 0.29 7.34 -2.39 -0.02 0.28 16 28 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 29 H 0.03 1.17 8.03 -2.39 -0.02 1.15 16 30 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 32 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 38 H 0.09 2.64 7.42 -2.39 -0.02 2.62 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 2.04 6.81 -2.39 -0.02 2.02 16 41 H 0.09 1.65 6.44 -2.39 -0.02 1.64 16 42 H 0.13 1.80 7.40 -2.39 -0.02 1.79 16 43 H 0.12 1.85 8.11 -2.39 -0.02 1.83 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.51 391.18 3.48 -70.03 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.90 Total: 12.67 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 7.43 Total: 25.48 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.28 Total: -108.19 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -2.60 Total: -47.02 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.51 3.48 -70.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692298255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.208 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds