Wall clock time and date at job start Tue Mar 31 2020 10:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46799 * 2 1 4 4 C 1.42900 * 113.99808 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46880 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46851 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46914 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00168 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99807 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99858 * 175.58715 * 9 7 6 11 11 C 1.52995 * 109.50291 * 300.67218 * 10 9 7 12 12 O 1.42895 * 109.47131 * 305.34099 * 11 10 9 13 13 C 1.53047 * 109.49408 * 60.76892 * 10 9 7 14 14 C 1.53046 * 109.53512 * 58.58369 * 13 10 9 15 15 C 1.53188 * 109.31237 * 61.36562 * 14 13 10 16 16 N 1.46923 * 108.77549 * 305.36356 * 15 14 13 17 17 C 1.36942 * 120.63197 * 233.58365 * 16 15 14 18 18 H 1.07996 * 120.00065 * 141.83571 * 17 16 15 19 19 C 1.38813 * 119.99731 * 321.84626 * 17 16 15 20 20 N 1.31618 * 120.00518 * 354.13600 * 19 17 16 21 21 Si 1.86802 * 119.99889 * 174.13877 * 19 17 16 22 22 H 1.48502 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47038 * 119.99321 * 21 19 17 24 24 H 1.48496 * 109.47472 * 240.00023 * 21 19 17 25 25 C 1.46925 * 118.73876 * 53.60945 * 16 15 14 26 26 H 1.09002 * 109.46687 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47429 * 299.99711 * 1 2 3 28 28 H 1.08997 * 109.47427 * 60.00494 * 1 2 3 29 29 H 1.09004 * 109.47000 * 240.00453 * 2 1 3 30 30 H 1.09001 * 109.47307 * 120.00257 * 2 1 3 31 31 H 1.08996 * 109.47062 * 59.99799 * 4 3 2 32 32 H 1.08997 * 109.46800 * 299.99873 * 4 3 2 33 33 H 1.09007 * 109.46875 * 60.00030 * 5 4 3 34 34 H 1.08992 * 109.47026 * 299.99881 * 5 4 3 35 35 H 1.09005 * 109.47327 * 300.00121 * 6 5 4 36 36 H 1.08997 * 109.47109 * 60.00578 * 6 5 4 37 37 H 0.96998 * 119.99904 * 355.60256 * 9 7 6 38 38 H 1.09003 * 109.46944 * 65.34042 * 11 10 9 39 39 H 1.08998 * 109.47173 * 185.33449 * 11 10 9 40 40 H 0.96704 * 114.00131 * 179.97438 * 12 11 10 41 41 H 1.08995 * 109.45834 * 178.60105 * 13 10 9 42 42 H 1.09001 * 109.45956 * 298.56561 * 13 10 9 43 43 H 1.08993 * 109.49946 * 301.41432 * 14 13 10 44 44 H 1.09000 * 109.51864 * 181.33193 * 14 13 10 45 45 H 1.09005 * 109.58611 * 185.57394 * 15 14 13 46 46 H 1.09007 * 109.70413 * 65.22188 * 15 14 13 47 47 H 0.96996 * 120.00045 * 180.02562 * 20 19 17 48 48 H 1.09006 * 109.58651 * 186.60233 * 25 16 15 49 49 H 1.08997 * 109.70205 * 66.25184 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 6 5.3505 3.0594 -0.0012 7 6 5.7390 4.5155 -0.0011 8 8 4.8805 5.3721 -0.0006 9 7 7.0405 4.8656 -0.0006 10 6 7.4192 6.2775 -0.0981 11 6 6.8660 6.8660 -1.3975 12 8 7.3047 6.0747 -2.5035 13 6 6.8450 7.0439 1.0957 14 6 7.3722 6.4342 2.3967 15 6 8.8987 6.5574 2.4319 16 7 9.4504 5.9492 1.2136 17 6 10.4166 4.9820 1.2925 18 1 10.4019 4.1469 0.6079 19 6 11.4148 5.0750 2.2526 20 7 11.5013 6.1475 3.0105 21 14 12.6356 3.6776 2.4691 22 1 12.3243 2.5943 1.5022 23 1 14.0115 4.1800 2.2242 24 1 12.5410 3.1475 3.8529 25 6 8.9462 6.3989 -0.0911 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 3.8332 0.9768 -0.8908 32 1 3.8339 0.9766 0.8892 33 1 3.4227 3.4223 0.8889 34 1 3.4221 3.4217 -0.8911 35 1 5.7533 2.5762 0.8891 36 1 5.7533 2.5756 -0.8909 37 1 7.7264 4.1828 0.0642 38 1 5.7766 6.8673 -1.3610 39 1 7.2266 7.8878 -1.5160 40 1 6.9904 6.3901 -3.3620 41 1 7.1479 8.0892 1.0357 42 1 5.7570 6.9797 1.0793 43 1 7.0909 5.3824 2.4458 44 1 6.9446 6.9652 3.2472 45 1 9.2871 6.0378 3.3079 46 1 9.1816 7.6092 2.4757 47 1 12.1990 6.2126 3.6812 48 1 9.3660 5.7747 -0.8800 49 1 9.2310 7.4379 -0.2569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699997159.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:49 Heat of formation + Delta-G solvation = -128.148925 kcal Electronic energy + Delta-G solvation = -27788.190048 eV Core-core repulsion = 23943.434594 eV Total energy + Delta-G solvation = -3844.755454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.04341 -38.32746 -37.47546 -36.01256 -33.95532 -33.67236 -32.23945 -31.21368 -30.45248 -29.84888 -26.62850 -25.42481 -25.03651 -23.02445 -22.35453 -22.02899 -20.77687 -19.89604 -18.63864 -17.20883 -16.93195 -16.71200 -16.59424 -16.36401 -15.43290 -15.18267 -14.86298 -14.56283 -14.30855 -13.97294 -13.88277 -13.46105 -13.22912 -12.92982 -12.84370 -12.82193 -12.50999 -12.26642 -11.94415 -11.86358 -11.73004 -11.62461 -11.40348 -11.13662 -11.05585 -10.98963 -10.84792 -10.81472 -10.42530 -10.16381 -10.09530 -9.81100 -9.77193 -9.63541 -9.53699 -8.98897 -8.51585 -8.40064 -6.55557 -5.83535 -3.39590 3.08241 3.32074 3.32473 3.40329 3.41648 3.81850 4.42698 4.53374 4.76562 4.83135 4.91797 4.93751 5.07334 5.15151 5.25516 5.32817 5.35096 5.38869 5.39990 5.47536 5.58278 5.62699 5.63690 5.71295 5.74388 5.83058 5.83306 6.00616 6.07153 6.10826 6.25492 6.33095 6.45067 6.53528 6.68962 6.74125 6.84717 6.93795 7.04252 7.17003 7.39028 7.66506 7.75123 7.87288 8.13244 8.46759 8.73363 9.19007 9.76784 10.39958 11.23970 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003302 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.894713 B = 8477.809763 C = 9550.924433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.062 3.938 5 C -0.099 4.099 6 C -0.140 4.140 7 C 0.516 3.484 8 O -0.555 6.555 9 N -0.689 5.689 10 C 0.167 3.833 11 C 0.067 3.933 12 O -0.565 6.565 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.173 3.827 16 N -0.588 5.588 17 C -0.260 4.260 18 H 0.061 0.939 19 C 0.013 3.987 20 N -0.898 5.898 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.148 3.852 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.405 0.595 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.369 0.631 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.066 0.934 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 -7.339 -7.222 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.137 4.137 6 C -0.180 4.180 7 C 0.302 3.698 8 O -0.434 6.434 9 N -0.338 5.338 10 C 0.079 3.921 11 C -0.012 4.012 12 O -0.369 6.369 13 C -0.159 4.159 14 C -0.175 4.175 15 C 0.048 3.952 16 N -0.310 5.310 17 C -0.390 4.390 18 H 0.079 0.921 19 C -0.187 4.187 20 N -0.541 5.541 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.021 3.979 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.241 0.759 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.215 0.785 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.460 -6.871 -6.603 18.161 hybrid contribution 1.053 -0.853 -0.186 1.368 sum -14.407 -7.725 -6.789 17.701 Atomic orbital electron populations 1.21743 0.93852 1.02099 1.03195 1.22446 0.95561 0.84032 0.99981 1.87895 1.21411 1.26170 1.95423 1.22539 0.80986 0.97812 1.00088 1.21167 0.93721 0.94091 1.04674 1.21539 0.96972 0.95061 1.04401 1.20356 0.82783 0.90717 0.75904 1.90589 1.49869 1.51922 1.51055 1.45788 1.06753 1.08735 1.72537 1.20948 0.98262 0.80874 0.92050 1.22634 0.98965 0.93227 0.86413 1.86509 1.77345 1.56283 1.16741 1.21764 1.01086 0.98397 0.94611 1.22090 1.00274 0.99891 0.95196 1.20755 0.87200 0.96353 0.90929 1.43941 1.43648 1.44587 0.98841 1.19090 1.02589 0.99921 1.17373 0.92090 1.25369 0.96863 0.96564 0.99884 1.69971 1.33959 1.26796 1.23378 0.86236 0.81293 0.81689 0.77584 1.20132 1.21569 1.21610 1.21119 0.88374 0.98140 0.90300 0.91224 0.91817 0.91865 0.93526 0.93470 0.93379 0.93272 0.90435 0.90555 0.88989 0.89058 0.75927 0.92164 0.93605 0.78544 0.92307 0.90885 0.92876 0.93426 0.90355 0.96340 0.93567 0.91585 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.61 10.34 -35.23 -0.36 -4.97 16 4 C 0.06 0.65 5.94 37.16 0.22 0.87 16 5 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16 6 C -0.14 -1.70 5.70 -27.88 -0.16 -1.85 16 7 C 0.52 8.25 7.24 -10.98 -0.08 8.17 16 8 O -0.55 -10.18 12.29 5.56 0.07 -10.11 16 9 N -0.69 -11.61 3.94 -47.50 -0.19 -11.80 16 10 C 0.17 2.97 0.45 -131.70 -0.06 2.91 16 11 C 0.07 1.05 5.63 37.15 0.21 1.26 16 12 O -0.56 -8.36 13.08 -35.23 -0.46 -8.82 16 13 C -0.12 -2.20 4.49 -26.68 -0.12 -2.32 16 14 C -0.14 -2.67 5.93 -26.61 -0.16 -2.82 16 15 C 0.17 4.06 5.21 -3.71 -0.02 4.04 16 16 N -0.59 -14.02 2.84 -172.32 -0.49 -14.51 16 17 C -0.26 -6.76 9.51 -15.06 -0.14 -6.90 16 18 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 19 C 0.01 0.36 5.12 -17.43 -0.09 0.27 16 20 N -0.90 -25.46 11.31 55.49 0.63 -24.83 16 21 Si 0.90 20.99 29.56 -169.99 -5.02 15.96 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.15 3.06 5.07 -3.71 -0.02 3.04 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 6.95 8.45 -40.82 -0.34 6.61 16 38 H 0.06 0.99 6.44 -51.93 -0.33 0.66 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.37 3.72 9.12 45.56 0.42 4.13 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 43 H 0.05 1.07 7.53 -51.93 -0.39 0.68 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 2.05 6.50 -51.93 -0.34 1.71 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.07 1.40 7.78 -51.93 -0.40 0.99 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -31.06 385.05 -7.96 -39.03 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.02 Total: 8.92 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.08 Total: 5.33 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.05 Total: -51.14 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.76 Total: -23.91 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.06 -7.96 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699997159.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.121 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds