Wall clock time and date at job start Tue Mar 31 2020 10:25:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42906 * 109.46799 * 2 1
4 4 C 1.42900 * 113.99808 * 180.02562 * 3 2 1
5 5 C 1.53000 * 109.46880 * 179.97438 * 4 3 2
6 6 C 1.52999 * 109.46851 * 179.97438 * 5 4 3
7 7 C 1.50704 * 109.46914 * 180.02562 * 6 5 4
8 8 O 1.21279 * 120.00168 * 0.02562 * 7 6 5
9 9 N 1.34778 * 119.99807 * 179.97438 * 7 6 5
10 10 C 1.46500 * 119.99858 * 175.58715 * 9 7 6
11 11 C 1.52995 * 109.50291 * 300.67218 * 10 9 7
12 12 O 1.42895 * 109.47131 * 305.34099 * 11 10 9
13 13 C 1.53047 * 109.49408 * 60.76892 * 10 9 7
14 14 C 1.53046 * 109.53512 * 58.58369 * 13 10 9
15 15 C 1.53188 * 109.31237 * 61.36562 * 14 13 10
16 16 N 1.46923 * 108.77549 * 305.36356 * 15 14 13
17 17 C 1.36942 * 120.63197 * 233.58365 * 16 15 14
18 18 H 1.07996 * 120.00065 * 141.83571 * 17 16 15
19 19 C 1.38813 * 119.99731 * 321.84626 * 17 16 15
20 20 N 1.31618 * 120.00518 * 354.13600 * 19 17 16
21 21 Si 1.86802 * 119.99889 * 174.13877 * 19 17 16
22 22 H 1.48502 * 109.47043 * 359.97438 * 21 19 17
23 23 H 1.48505 * 109.47038 * 119.99321 * 21 19 17
24 24 H 1.48496 * 109.47472 * 240.00023 * 21 19 17
25 25 C 1.46925 * 118.73876 * 53.60945 * 16 15 14
26 26 H 1.09002 * 109.46687 * 179.97438 * 1 2 3
27 27 H 1.08993 * 109.47429 * 299.99711 * 1 2 3
28 28 H 1.08997 * 109.47427 * 60.00494 * 1 2 3
29 29 H 1.09004 * 109.47000 * 240.00453 * 2 1 3
30 30 H 1.09001 * 109.47307 * 120.00257 * 2 1 3
31 31 H 1.08996 * 109.47062 * 59.99799 * 4 3 2
32 32 H 1.08997 * 109.46800 * 299.99873 * 4 3 2
33 33 H 1.09007 * 109.46875 * 60.00030 * 5 4 3
34 34 H 1.08992 * 109.47026 * 299.99881 * 5 4 3
35 35 H 1.09005 * 109.47327 * 300.00121 * 6 5 4
36 36 H 1.08997 * 109.47109 * 60.00578 * 6 5 4
37 37 H 0.96998 * 119.99904 * 355.60256 * 9 7 6
38 38 H 1.09003 * 109.46944 * 65.34042 * 11 10 9
39 39 H 1.08998 * 109.47173 * 185.33449 * 11 10 9
40 40 H 0.96704 * 114.00131 * 179.97438 * 12 11 10
41 41 H 1.08995 * 109.45834 * 178.60105 * 13 10 9
42 42 H 1.09001 * 109.45956 * 298.56561 * 13 10 9
43 43 H 1.08993 * 109.49946 * 301.41432 * 14 13 10
44 44 H 1.09000 * 109.51864 * 181.33193 * 14 13 10
45 45 H 1.09005 * 109.58611 * 185.57394 * 15 14 13
46 46 H 1.09007 * 109.70413 * 65.22188 * 15 14 13
47 47 H 0.96996 * 120.00045 * 180.02562 * 20 19 17
48 48 H 1.09006 * 109.58651 * 186.60233 * 25 16 15
49 49 H 1.08997 * 109.70205 * 66.25184 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.4308 1.4602 -0.0006
5 6 3.8252 2.9385 -0.0012
6 6 5.3505 3.0594 -0.0012
7 6 5.7390 4.5155 -0.0011
8 8 4.8805 5.3721 -0.0006
9 7 7.0405 4.8656 -0.0006
10 6 7.4192 6.2775 -0.0981
11 6 6.8660 6.8660 -1.3975
12 8 7.3047 6.0747 -2.5035
13 6 6.8450 7.0439 1.0957
14 6 7.3722 6.4342 2.3967
15 6 8.8987 6.5574 2.4319
16 7 9.4504 5.9492 1.2136
17 6 10.4166 4.9820 1.2925
18 1 10.4019 4.1469 0.6079
19 6 11.4148 5.0750 2.2526
20 7 11.5013 6.1475 3.0105
21 14 12.6356 3.6776 2.4691
22 1 12.3243 2.5943 1.5022
23 1 14.0115 4.1800 2.2242
24 1 12.5410 3.1475 3.8529
25 6 8.9462 6.3989 -0.0911
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5137 0.8899
28 1 -0.3634 0.5137 -0.8900
29 1 1.8933 -0.5138 -0.8901
30 1 1.8934 -0.5139 0.8900
31 1 3.8332 0.9768 -0.8908
32 1 3.8339 0.9766 0.8892
33 1 3.4227 3.4223 0.8889
34 1 3.4221 3.4217 -0.8911
35 1 5.7533 2.5762 0.8891
36 1 5.7533 2.5756 -0.8909
37 1 7.7264 4.1828 0.0642
38 1 5.7766 6.8673 -1.3610
39 1 7.2266 7.8878 -1.5160
40 1 6.9904 6.3901 -3.3620
41 1 7.1479 8.0892 1.0357
42 1 5.7570 6.9797 1.0793
43 1 7.0909 5.3824 2.4458
44 1 6.9446 6.9652 3.2472
45 1 9.2871 6.0378 3.3079
46 1 9.1816 7.6092 2.4757
47 1 12.1990 6.2126 3.6812
48 1 9.3660 5.7747 -0.8800
49 1 9.2310 7.4379 -0.2569
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699997159.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:25:49
Heat of formation + Delta-G solvation = -128.148925 kcal
Electronic energy + Delta-G solvation = -27788.190048 eV
Core-core repulsion = 23943.434594 eV
Total energy + Delta-G solvation = -3844.755454 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.204 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.04341 -38.32746 -37.47546 -36.01256 -33.95532 -33.67236 -32.23945 -31.21368
-30.45248 -29.84888 -26.62850 -25.42481 -25.03651 -23.02445 -22.35453 -22.02899
-20.77687 -19.89604 -18.63864 -17.20883 -16.93195 -16.71200 -16.59424 -16.36401
-15.43290 -15.18267 -14.86298 -14.56283 -14.30855 -13.97294 -13.88277 -13.46105
-13.22912 -12.92982 -12.84370 -12.82193 -12.50999 -12.26642 -11.94415 -11.86358
-11.73004 -11.62461 -11.40348 -11.13662 -11.05585 -10.98963 -10.84792 -10.81472
-10.42530 -10.16381 -10.09530 -9.81100 -9.77193 -9.63541 -9.53699 -8.98897
-8.51585 -8.40064 -6.55557 -5.83535 -3.39590 3.08241 3.32074 3.32473
3.40329 3.41648 3.81850 4.42698 4.53374 4.76562 4.83135 4.91797
4.93751 5.07334 5.15151 5.25516 5.32817 5.35096 5.38869 5.39990
5.47536 5.58278 5.62699 5.63690 5.71295 5.74388 5.83058 5.83306
6.00616 6.07153 6.10826 6.25492 6.33095 6.45067 6.53528 6.68962
6.74125 6.84717 6.93795 7.04252 7.17003 7.39028 7.66506 7.75123
7.87288 8.13244 8.46759 8.73363 9.19007 9.76784 10.39958 11.23970
Molecular weight = 314.20amu
Principal moments of inertia in cm(-1)
A = 0.013446 B = 0.003302 C = 0.002931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2081.894713 B = 8477.809763 C = 9550.924433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.056 3.944
3 O -0.389 6.389
4 C 0.062 3.938
5 C -0.099 4.099
6 C -0.140 4.140
7 C 0.516 3.484
8 O -0.555 6.555
9 N -0.689 5.689
10 C 0.167 3.833
11 C 0.067 3.933
12 O -0.565 6.565
13 C -0.120 4.120
14 C -0.135 4.135
15 C 0.173 3.827
16 N -0.588 5.588
17 C -0.260 4.260
18 H 0.061 0.939
19 C 0.013 3.987
20 N -0.898 5.898
21 Si 0.902 3.098
22 H -0.276 1.276
23 H -0.289 1.289
24 H -0.289 1.289
25 C 0.148 3.852
26 H 0.069 0.931
27 H 0.063 0.937
28 H 0.062 0.938
29 H 0.046 0.954
30 H 0.047 0.953
31 H 0.048 0.952
32 H 0.049 0.951
33 H 0.077 0.923
34 H 0.076 0.924
35 H 0.092 0.908
36 H 0.091 0.909
37 H 0.405 0.595
38 H 0.060 0.940
39 H 0.046 0.954
40 H 0.369 0.631
41 H 0.058 0.942
42 H 0.073 0.927
43 H 0.052 0.948
44 H 0.047 0.953
45 H 0.078 0.922
46 H 0.018 0.982
47 H 0.254 0.746
48 H 0.066 0.934
49 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.200 -7.339 -7.222 18.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.020 4.020
3 O -0.309 6.309
4 C -0.014 4.014
5 C -0.137 4.137
6 C -0.180 4.180
7 C 0.302 3.698
8 O -0.434 6.434
9 N -0.338 5.338
10 C 0.079 3.921
11 C -0.012 4.012
12 O -0.369 6.369
13 C -0.159 4.159
14 C -0.175 4.175
15 C 0.048 3.952
16 N -0.310 5.310
17 C -0.390 4.390
18 H 0.079 0.921
19 C -0.187 4.187
20 N -0.541 5.541
21 Si 0.732 3.268
22 H -0.201 1.201
23 H -0.216 1.216
24 H -0.216 1.216
25 C 0.021 3.979
26 H 0.088 0.912
27 H 0.082 0.918
28 H 0.081 0.919
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.096 0.904
34 H 0.094 0.906
35 H 0.110 0.890
36 H 0.109 0.891
37 H 0.241 0.759
38 H 0.078 0.922
39 H 0.064 0.936
40 H 0.215 0.785
41 H 0.077 0.923
42 H 0.091 0.909
43 H 0.071 0.929
44 H 0.066 0.934
45 H 0.096 0.904
46 H 0.037 0.963
47 H 0.064 0.936
48 H 0.084 0.916
49 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges -15.460 -6.871 -6.603 18.161
hybrid contribution 1.053 -0.853 -0.186 1.368
sum -14.407 -7.725 -6.789 17.701
Atomic orbital electron populations
1.21743 0.93852 1.02099 1.03195 1.22446 0.95561 0.84032 0.99981
1.87895 1.21411 1.26170 1.95423 1.22539 0.80986 0.97812 1.00088
1.21167 0.93721 0.94091 1.04674 1.21539 0.96972 0.95061 1.04401
1.20356 0.82783 0.90717 0.75904 1.90589 1.49869 1.51922 1.51055
1.45788 1.06753 1.08735 1.72537 1.20948 0.98262 0.80874 0.92050
1.22634 0.98965 0.93227 0.86413 1.86509 1.77345 1.56283 1.16741
1.21764 1.01086 0.98397 0.94611 1.22090 1.00274 0.99891 0.95196
1.20755 0.87200 0.96353 0.90929 1.43941 1.43648 1.44587 0.98841
1.19090 1.02589 0.99921 1.17373 0.92090 1.25369 0.96863 0.96564
0.99884 1.69971 1.33959 1.26796 1.23378 0.86236 0.81293 0.81689
0.77584 1.20132 1.21569 1.21610 1.21119 0.88374 0.98140 0.90300
0.91224 0.91817 0.91865 0.93526 0.93470 0.93379 0.93272 0.90435
0.90555 0.88989 0.89058 0.75927 0.92164 0.93605 0.78544 0.92307
0.90885 0.92876 0.93426 0.90355 0.96340 0.93567 0.91585 0.95257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16
2 C 0.06 0.49 6.66 37.16 0.25 0.74 16
3 O -0.39 -4.61 10.34 -35.23 -0.36 -4.97 16
4 C 0.06 0.65 5.94 37.16 0.22 0.87 16
5 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16
6 C -0.14 -1.70 5.70 -27.88 -0.16 -1.85 16
7 C 0.52 8.25 7.24 -10.98 -0.08 8.17 16
8 O -0.55 -10.18 12.29 5.56 0.07 -10.11 16
9 N -0.69 -11.61 3.94 -47.50 -0.19 -11.80 16
10 C 0.17 2.97 0.45 -131.70 -0.06 2.91 16
11 C 0.07 1.05 5.63 37.15 0.21 1.26 16
12 O -0.56 -8.36 13.08 -35.23 -0.46 -8.82 16
13 C -0.12 -2.20 4.49 -26.68 -0.12 -2.32 16
14 C -0.14 -2.67 5.93 -26.61 -0.16 -2.82 16
15 C 0.17 4.06 5.21 -3.71 -0.02 4.04 16
16 N -0.59 -14.02 2.84 -172.32 -0.49 -14.51 16
17 C -0.26 -6.76 9.51 -15.06 -0.14 -6.90 16
18 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16
19 C 0.01 0.36 5.12 -17.43 -0.09 0.27 16
20 N -0.90 -25.46 11.31 55.49 0.63 -24.83 16
21 Si 0.90 20.99 29.56 -169.99 -5.02 15.96 16
22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
25 C 0.15 3.06 5.07 -3.71 -0.02 3.04 16
26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16
30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
33 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16
34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16
35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
37 H 0.41 6.95 8.45 -40.82 -0.34 6.61 16
38 H 0.06 0.99 6.44 -51.93 -0.33 0.66 16
39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
40 H 0.37 3.72 9.12 45.56 0.42 4.13 16
41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
42 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16
43 H 0.05 1.07 7.53 -51.93 -0.39 0.68 16
44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
45 H 0.08 2.05 6.50 -51.93 -0.34 1.71 16
46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
48 H 0.07 1.40 7.78 -51.93 -0.40 0.99 16
49 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16
LS Contribution 385.05 15.07 5.80 5.80
Total: -1.00 -31.06 385.05 -7.96 -39.03
By element:
Atomic # 1 Polarization: 16.94 SS G_CDS: -8.02 Total: 8.92 kcal
Atomic # 6 Polarization: 5.25 SS G_CDS: 0.08 Total: 5.33 kcal
Atomic # 7 Polarization: -51.09 SS G_CDS: -0.05 Total: -51.14 kcal
Atomic # 8 Polarization: -23.15 SS G_CDS: -0.76 Total: -23.91 kcal
Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -31.06 -7.96 -39.03 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699997159.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.121 kcal
(2) G-P(sol) polarization free energy of solvation -31.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.184 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.149 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds