Wall clock time and date at job start Tue Mar 31 2020 10:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47074 * 2 1 4 4 C 1.42901 * 113.99951 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46909 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47125 * 179.97438 * 6 5 4 8 8 O 1.21273 * 119.99838 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.46510 * 119.99698 * 185.06638 * 9 7 6 11 11 C 1.52999 * 109.49676 * 57.00001 * 10 9 7 12 12 O 1.42899 * 109.47062 * 54.78384 * 11 10 9 13 13 C 1.53041 * 109.49446 * 296.93802 * 10 9 7 14 14 C 1.53047 * 109.53750 * 301.38091 * 13 10 9 15 15 C 1.53191 * 109.31004 * 298.63625 * 14 13 10 16 16 N 1.46929 * 108.77963 * 54.63763 * 15 14 13 17 17 C 1.36934 * 120.63473 * 126.36496 * 16 15 14 18 18 H 1.08008 * 119.99858 * 329.46608 * 17 16 15 19 19 C 1.38807 * 120.00410 * 149.46858 * 17 16 15 20 20 N 1.31627 * 119.99616 * 348.46922 * 19 17 16 21 21 Si 1.86792 * 120.00482 * 168.46920 * 19 17 16 22 22 H 1.48504 * 109.47206 * 89.99849 * 21 19 17 23 23 H 1.48497 * 109.47387 * 209.99724 * 21 19 17 24 24 H 1.48503 * 109.47144 * 329.99986 * 21 19 17 25 25 C 1.46930 * 118.73614 * 306.39099 * 16 15 14 26 26 H 1.08993 * 109.47490 * 299.99746 * 1 2 3 27 27 H 1.09002 * 109.47036 * 60.00274 * 1 2 3 28 28 H 1.09004 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47041 * 239.99641 * 2 1 3 30 30 H 1.09002 * 109.47036 * 119.99726 * 2 1 3 31 31 H 1.08996 * 109.47385 * 59.99624 * 4 3 2 32 32 H 1.09000 * 109.47206 * 299.99665 * 4 3 2 33 33 H 1.08996 * 109.47550 * 59.99556 * 5 4 3 34 34 H 1.08999 * 109.47146 * 299.99360 * 5 4 3 35 35 H 1.08996 * 109.47403 * 59.99434 * 6 5 4 36 36 H 1.09000 * 109.47171 * 299.99485 * 6 5 4 37 37 H 0.97000 * 120.00698 * 5.06165 * 9 7 6 38 38 H 1.08994 * 109.47336 * 294.78144 * 11 10 9 39 39 H 1.09006 * 109.46773 * 174.77685 * 11 10 9 40 40 H 0.96701 * 113.99756 * 179.97438 * 12 11 10 41 41 H 1.08997 * 109.46132 * 61.40179 * 13 10 9 42 42 H 1.09004 * 109.45801 * 181.36319 * 13 10 9 43 43 H 1.08999 * 109.49675 * 58.58468 * 14 13 10 44 44 H 1.08993 * 109.49776 * 178.68839 * 14 13 10 45 45 H 1.09006 * 109.58356 * 174.42056 * 15 14 13 46 46 H 1.08997 * 109.59223 * 294.70518 * 15 14 13 47 47 H 0.97000 * 119.99475 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.58357 * 293.81920 * 25 16 15 49 49 H 1.08996 * 109.58751 * 173.39191 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3505 3.0592 -0.0012 7 6 5.7391 4.5153 -0.0011 8 8 4.8807 5.3719 -0.0006 9 7 7.0406 4.8653 -0.0026 10 6 7.4198 6.2761 0.1095 11 6 6.8227 6.8652 1.3890 12 8 7.2221 6.0733 2.5095 13 6 6.8897 7.0453 -1.1028 14 6 7.4606 6.4358 -2.3853 15 6 8.9878 6.5553 -2.3668 16 7 9.4950 5.9443 -1.1306 17 6 10.4603 4.9742 -1.1769 18 1 10.5171 4.3089 -2.0259 19 6 11.3659 4.8456 -0.1328 20 7 11.4478 5.7841 0.7866 21 14 12.4682 3.3410 -0.0322 22 1 13.7319 3.6032 -0.7669 23 1 12.7748 3.0461 1.3905 24 1 11.7743 2.1775 -0.6405 25 6 8.9464 6.3937 0.1562 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 -0.8907 32 1 3.8340 0.9765 0.8892 33 1 3.4229 3.4215 0.8905 34 1 3.4222 3.4224 -0.8894 35 1 5.7526 2.5762 -0.8917 36 1 5.7541 2.5751 0.8882 37 1 7.7263 4.1834 -0.0779 38 1 5.7353 6.8676 1.3150 39 1 7.1803 7.8865 1.5201 40 1 6.8794 6.3895 3.3567 41 1 5.8017 6.9837 -1.1245 42 1 7.1928 8.0899 -1.0309 43 1 7.1787 5.3846 -2.4454 44 1 7.0645 6.9693 -3.2493 45 1 9.4054 6.0357 -3.2292 46 1 9.2725 7.6069 -2.4006 47 1 12.0808 5.6944 1.5160 48 1 9.2277 7.4322 0.3307 49 1 9.3367 5.7675 0.9585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699997160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:52 Heat of formation + Delta-G solvation = -125.800486 kcal Electronic energy + Delta-G solvation = -28000.362968 eV Core-core repulsion = 24155.709351 eV Total energy + Delta-G solvation = -3844.653618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.93590 -38.29778 -37.41816 -35.86477 -33.87666 -33.56303 -32.50772 -31.25122 -30.20562 -29.72027 -26.57362 -25.43291 -25.03832 -23.00641 -22.32748 -22.01820 -20.68207 -19.80234 -18.56701 -17.19690 -16.80523 -16.72800 -16.56701 -16.29480 -15.42115 -15.17300 -14.63634 -14.43652 -14.22358 -13.99719 -13.78109 -13.48848 -13.15244 -13.00219 -12.84976 -12.74337 -12.35087 -12.25508 -11.94509 -11.85151 -11.70190 -11.59120 -11.33574 -11.12369 -11.02613 -10.93779 -10.80869 -10.74528 -10.45755 -10.21276 -9.96316 -9.81169 -9.74856 -9.58702 -9.53005 -8.88607 -8.54024 -8.28628 -6.66967 -5.82394 -3.30396 3.16736 3.33754 3.37241 3.40886 3.41937 3.92398 4.44245 4.71333 4.78186 4.86971 4.95379 4.99406 5.09360 5.18613 5.28758 5.32266 5.40614 5.44329 5.48894 5.50656 5.64091 5.65091 5.69073 5.76045 5.84610 5.86421 5.90527 6.00084 6.14610 6.16257 6.29548 6.35116 6.42660 6.53035 6.55003 6.70344 6.84231 7.00514 7.06641 7.11784 7.37448 7.66575 7.76034 8.09197 8.27133 8.43441 8.84170 9.16887 9.78920 10.37497 11.25029 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.003454 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.769473 B = 8105.482172 C = 8891.455885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.062 3.938 5 C -0.098 4.098 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.558 6.558 9 N -0.686 5.686 10 C 0.157 3.843 11 C 0.069 3.931 12 O -0.560 6.560 13 C -0.120 4.120 14 C -0.127 4.127 15 C 0.142 3.858 16 N -0.591 5.591 17 C -0.258 4.258 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.174 3.826 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.408 0.592 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.367 0.633 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.017 0.983 47 H 0.255 0.745 48 H 0.029 0.971 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 -6.667 0.039 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.300 3.700 8 O -0.438 6.438 9 N -0.336 5.336 10 C 0.069 3.931 11 C -0.010 4.010 12 O -0.363 6.363 13 C -0.159 4.159 14 C -0.166 4.166 15 C 0.016 3.984 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.048 3.952 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.243 0.757 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.212 0.788 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.312 -6.235 -0.288 16.536 hybrid contribution 0.963 -0.916 0.518 1.426 sum -14.349 -7.151 0.230 16.034 Atomic orbital electron populations 1.21743 0.93870 1.02082 1.03185 1.22441 0.95543 0.84068 0.99973 1.87893 1.21450 1.26137 1.95422 1.22546 0.80930 0.97876 1.00082 1.21163 0.93801 0.94003 1.04627 1.21543 0.96852 0.95259 1.04363 1.20356 0.82928 0.90625 0.76058 1.90576 1.49936 1.51935 1.51381 1.45847 1.06616 1.09167 1.71925 1.21199 0.99752 0.80473 0.91702 1.22576 0.98821 0.93238 0.86405 1.86566 1.77109 1.55831 1.16800 1.21748 1.01003 0.98518 0.94609 1.21904 0.98437 1.00346 0.95915 1.20978 0.91124 0.95850 0.90480 1.44022 1.43497 1.43973 0.99833 1.19140 1.06320 1.07312 1.05973 0.91748 1.25163 0.97178 0.97748 0.99223 1.69962 1.37513 1.32084 1.14730 0.86295 0.80799 0.82671 0.76930 1.21429 1.21583 1.20454 1.21049 0.84512 0.99235 0.90420 0.91855 0.91842 0.91237 0.93506 0.93514 0.93328 0.93342 0.90538 0.90524 0.89168 0.89012 0.75675 0.92352 0.93872 0.78833 0.91050 0.92292 0.92509 0.93254 0.92939 0.96533 0.93486 0.95288 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.72 10.34 -35.23 -0.36 -5.08 16 4 C 0.06 0.68 5.94 37.16 0.22 0.90 16 5 C -0.10 -1.25 4.87 -26.73 -0.13 -1.38 16 6 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 7 C 0.51 8.65 7.24 -10.99 -0.08 8.57 16 8 O -0.56 -10.61 12.30 5.56 0.07 -10.54 16 9 N -0.69 -12.47 3.95 -47.49 -0.19 -12.65 16 10 C 0.16 3.02 0.45 -131.69 -0.06 2.96 16 11 C 0.07 1.22 5.59 37.16 0.21 1.43 16 12 O -0.56 -9.87 13.08 -35.23 -0.46 -10.33 16 13 C -0.12 -2.20 4.52 -26.69 -0.12 -2.32 16 14 C -0.13 -2.29 5.93 -26.61 -0.16 -2.45 16 15 C 0.14 2.94 6.52 -3.71 -0.02 2.91 16 16 N -0.59 -14.07 2.85 -172.32 -0.49 -14.56 16 17 C -0.26 -6.68 9.59 -15.06 -0.14 -6.82 16 18 H 0.06 1.64 7.86 -52.48 -0.41 1.23 16 19 C 0.01 0.16 5.03 -17.43 -0.09 0.08 16 20 N -0.90 -25.24 11.04 55.49 0.61 -24.63 16 21 Si 0.90 20.90 29.57 -169.99 -5.03 15.87 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.17 4.02 3.82 -3.71 -0.01 4.01 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.41 7.73 8.43 -40.82 -0.34 7.38 16 38 H 0.06 1.05 6.30 -51.93 -0.33 0.73 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.37 4.66 9.12 45.56 0.42 5.08 16 41 H 0.07 1.34 6.26 -51.93 -0.33 1.01 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.11 2.76 5.91 -51.93 -0.31 2.45 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -30.79 384.43 -7.97 -38.76 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -8.00 Total: 11.45 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.08 Total: 5.92 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.07 Total: -51.84 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.76 Total: -25.96 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.79 -7.97 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699997160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.037 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds