Wall clock time and date at job start Tue Mar 31 2020 10:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47074 * 2 1 4 4 C 1.42901 * 113.99951 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46909 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47125 * 179.97438 * 6 5 4 8 8 O 1.21273 * 119.99838 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.46510 * 119.99698 * 185.06638 * 9 7 6 11 11 C 1.52999 * 109.49676 * 57.00001 * 10 9 7 12 12 O 1.42899 * 109.47062 * 54.78384 * 11 10 9 13 13 C 1.53041 * 109.49446 * 296.93802 * 10 9 7 14 14 C 1.53047 * 109.53750 * 301.38091 * 13 10 9 15 15 C 1.53191 * 109.31004 * 298.63625 * 14 13 10 16 16 N 1.46929 * 108.77963 * 54.63763 * 15 14 13 17 17 C 1.36934 * 120.63473 * 126.36496 * 16 15 14 18 18 H 1.08008 * 119.99858 * 329.46608 * 17 16 15 19 19 C 1.38807 * 120.00410 * 149.46858 * 17 16 15 20 20 N 1.31627 * 119.99616 * 348.46922 * 19 17 16 21 21 Si 1.86792 * 120.00482 * 168.46920 * 19 17 16 22 22 H 1.48504 * 109.47206 * 89.99849 * 21 19 17 23 23 H 1.48497 * 109.47387 * 209.99724 * 21 19 17 24 24 H 1.48503 * 109.47144 * 329.99986 * 21 19 17 25 25 C 1.46930 * 118.73614 * 306.39099 * 16 15 14 26 26 H 1.08993 * 109.47490 * 299.99746 * 1 2 3 27 27 H 1.09002 * 109.47036 * 60.00274 * 1 2 3 28 28 H 1.09004 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47041 * 239.99641 * 2 1 3 30 30 H 1.09002 * 109.47036 * 119.99726 * 2 1 3 31 31 H 1.08996 * 109.47385 * 59.99624 * 4 3 2 32 32 H 1.09000 * 109.47206 * 299.99665 * 4 3 2 33 33 H 1.08996 * 109.47550 * 59.99556 * 5 4 3 34 34 H 1.08999 * 109.47146 * 299.99360 * 5 4 3 35 35 H 1.08996 * 109.47403 * 59.99434 * 6 5 4 36 36 H 1.09000 * 109.47171 * 299.99485 * 6 5 4 37 37 H 0.97000 * 120.00698 * 5.06165 * 9 7 6 38 38 H 1.08994 * 109.47336 * 294.78144 * 11 10 9 39 39 H 1.09006 * 109.46773 * 174.77685 * 11 10 9 40 40 H 0.96701 * 113.99756 * 179.97438 * 12 11 10 41 41 H 1.08997 * 109.46132 * 61.40179 * 13 10 9 42 42 H 1.09004 * 109.45801 * 181.36319 * 13 10 9 43 43 H 1.08999 * 109.49675 * 58.58468 * 14 13 10 44 44 H 1.08993 * 109.49776 * 178.68839 * 14 13 10 45 45 H 1.09006 * 109.58356 * 174.42056 * 15 14 13 46 46 H 1.08997 * 109.59223 * 294.70518 * 15 14 13 47 47 H 0.97000 * 119.99475 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.58357 * 293.81920 * 25 16 15 49 49 H 1.08996 * 109.58751 * 173.39191 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3505 3.0592 -0.0012 7 6 5.7391 4.5153 -0.0011 8 8 4.8807 5.3719 -0.0006 9 7 7.0406 4.8653 -0.0026 10 6 7.4198 6.2761 0.1095 11 6 6.8227 6.8652 1.3890 12 8 7.2221 6.0733 2.5095 13 6 6.8897 7.0453 -1.1028 14 6 7.4606 6.4358 -2.3853 15 6 8.9878 6.5553 -2.3668 16 7 9.4950 5.9443 -1.1306 17 6 10.4603 4.9742 -1.1769 18 1 10.5171 4.3089 -2.0259 19 6 11.3659 4.8456 -0.1328 20 7 11.4478 5.7841 0.7866 21 14 12.4682 3.3410 -0.0322 22 1 13.7319 3.6032 -0.7669 23 1 12.7748 3.0461 1.3905 24 1 11.7743 2.1775 -0.6405 25 6 8.9464 6.3937 0.1562 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 -0.8907 32 1 3.8340 0.9765 0.8892 33 1 3.4229 3.4215 0.8905 34 1 3.4222 3.4224 -0.8894 35 1 5.7526 2.5762 -0.8917 36 1 5.7541 2.5751 0.8882 37 1 7.7263 4.1834 -0.0779 38 1 5.7353 6.8676 1.3150 39 1 7.1803 7.8865 1.5201 40 1 6.8794 6.3895 3.3567 41 1 5.8017 6.9837 -1.1245 42 1 7.1928 8.0899 -1.0309 43 1 7.1787 5.3846 -2.4454 44 1 7.0645 6.9693 -3.2493 45 1 9.4054 6.0357 -3.2292 46 1 9.2725 7.6069 -2.4006 47 1 12.0808 5.6944 1.5160 48 1 9.2277 7.4322 0.3307 49 1 9.3367 5.7675 0.9585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699997160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:51 Heat of formation + Delta-G solvation = -147.662743 kcal Electronic energy + Delta-G solvation = -28001.310987 eV Core-core repulsion = 24155.709351 eV Total energy + Delta-G solvation = -3845.601636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38160 -39.27611 -38.77180 -37.35860 -35.39154 -34.74650 -34.14427 -32.20862 -31.77053 -31.26374 -27.61080 -27.28894 -26.62534 -23.98690 -23.66125 -23.22911 -22.15819 -21.18979 -20.07094 -18.79372 -18.23212 -18.14516 -17.41501 -17.32826 -16.93710 -16.40882 -16.27407 -15.79945 -15.49711 -15.35761 -15.07621 -14.90398 -14.65749 -14.41476 -14.14977 -14.06800 -13.56950 -13.50609 -13.39934 -13.09174 -12.89116 -12.70165 -12.64875 -12.53507 -12.43696 -12.39742 -12.19670 -11.95693 -11.86464 -11.74300 -11.66268 -11.47171 -11.20256 -11.01611 -10.53033 -10.52207 -10.33725 -9.74069 -8.61027 -7.82602 -5.33238 1.50481 1.52179 1.60796 1.84679 2.31759 2.53747 2.85672 3.33013 3.36272 3.67947 3.80380 4.01293 4.11977 4.14267 4.15597 4.18741 4.26776 4.37117 4.37816 4.47276 4.50023 4.50712 4.53579 4.57203 4.64808 4.74719 4.81928 4.86208 4.89413 4.97122 5.00056 5.03370 5.14475 5.16307 5.21995 5.25013 5.30956 5.35801 5.50585 5.66061 5.78517 5.83246 6.31414 6.44400 6.85471 6.92784 7.17891 7.46325 7.86739 8.41430 9.22688 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.003454 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.769473 B = 8105.482172 C = 8891.455885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.416 6.416 4 C 0.065 3.935 5 C -0.090 4.090 6 C -0.131 4.131 7 C 0.512 3.488 8 O -0.581 6.581 9 N -0.689 5.689 10 C 0.160 3.840 11 C 0.075 3.925 12 O -0.577 6.577 13 C -0.115 4.115 14 C -0.114 4.114 15 C 0.139 3.861 16 N -0.604 5.604 17 C -0.259 4.259 18 H 0.069 0.931 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.264 1.264 25 C 0.190 3.810 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.404 0.596 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.388 0.612 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.013 0.987 47 H 0.248 0.752 48 H 0.001 0.999 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 -8.427 -0.703 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.337 6.337 4 C -0.011 4.011 5 C -0.128 4.128 6 C -0.171 4.171 7 C 0.300 3.700 8 O -0.462 6.462 9 N -0.338 5.338 10 C 0.072 3.928 11 C -0.004 4.004 12 O -0.383 6.383 13 C -0.154 4.154 14 C -0.153 4.153 15 C 0.014 3.986 16 N -0.327 5.327 17 C -0.389 4.389 18 H 0.087 0.913 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.794 3.206 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.188 1.188 25 C 0.064 3.936 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.238 0.762 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.236 0.764 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.058 0.942 48 H 0.019 0.981 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.334 -8.003 -1.042 18.218 hybrid contribution 1.241 -0.329 0.736 1.480 sum -15.093 -8.331 -0.306 17.242 Atomic orbital electron populations 1.21776 0.93116 1.03361 1.02553 1.22669 0.96270 0.82847 1.00981 1.87858 1.22005 1.28180 1.95642 1.22515 0.80782 0.96408 1.01435 1.21046 0.93464 0.95355 1.02956 1.21525 0.97000 0.92428 1.06103 1.20978 0.81933 0.92185 0.74928 1.90565 1.50274 1.53101 1.52282 1.45834 1.07165 1.08380 1.72426 1.20987 0.96965 0.81763 0.93080 1.22469 0.98524 0.93384 0.86041 1.86515 1.77551 1.56292 1.17975 1.21707 1.00811 0.98593 0.94251 1.21778 0.96211 1.00532 0.96824 1.21094 0.92915 0.95329 0.89275 1.44224 1.43494 1.43997 1.00963 1.19432 1.06201 1.07520 1.05736 0.91328 1.25855 0.98769 1.00217 0.99228 1.70136 1.38371 1.33921 1.15322 0.85307 0.78894 0.80153 0.76231 1.21747 1.22398 1.18837 1.20674 0.86977 0.96622 0.89323 0.92495 0.92460 0.89014 0.92432 0.92487 0.91851 0.92002 0.92307 0.92120 0.87116 0.87371 0.76158 0.92310 0.93270 0.76424 0.91004 0.91937 0.92833 0.90624 0.92537 0.96943 0.94237 0.98104 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.42 -9.49 10.34 -148.98 -1.54 -11.03 16 4 C 0.06 1.27 5.94 71.98 0.43 1.70 16 5 C -0.09 -2.17 4.87 30.60 0.15 -2.02 16 6 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 7 C 0.51 16.59 7.24 87.66 0.63 17.22 16 8 O -0.58 -21.56 12.30 -3.01 -0.04 -21.59 16 9 N -0.69 -24.49 3.95 -422.56 -1.67 -26.16 16 10 C 0.16 6.13 0.45 3.68 0.00 6.14 16 11 C 0.08 2.65 5.59 71.98 0.40 3.05 16 12 O -0.58 -20.19 13.08 -148.98 -1.95 -22.14 16 13 C -0.12 -4.09 4.52 30.62 0.14 -3.95 16 14 C -0.11 -3.94 5.93 30.67 0.18 -3.76 16 15 C 0.14 5.64 6.52 86.36 0.56 6.20 16 16 N -0.60 -28.78 2.85 -699.09 -2.00 -30.78 16 17 C -0.26 -13.35 9.59 84.03 0.81 -12.55 16 18 H 0.07 3.43 7.86 -2.91 -0.02 3.41 16 19 C -0.04 -2.39 5.03 84.86 0.43 -1.96 16 20 N -0.93 -53.48 11.04 21.65 0.24 -53.24 16 21 Si 0.97 43.01 29.57 68.60 2.03 45.04 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 C 0.19 8.94 3.82 86.36 0.33 9.27 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.40 15.01 8.43 -92.71 -0.78 14.23 16 38 H 0.06 2.09 6.30 -2.39 -0.02 2.07 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.39 9.59 9.12 -74.06 -0.68 8.91 16 41 H 0.07 2.59 6.26 -2.39 -0.01 2.58 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 1.89 7.53 -2.39 -0.02 1.87 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.22 7.93 -2.38 -0.02 2.20 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 48 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.07 3.93 5.91 -2.39 -0.01 3.92 16 Total: -1.00 -66.33 384.43 0.01 -66.33 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.52 Total: 37.20 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 5.45 Total: 16.38 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -3.42 Total: -110.18 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -3.53 Total: -54.76 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.33 0.01 -66.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699997160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.337 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds