Wall clock time and date at job start Tue Mar 31 2020 10:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42894 * 109.47332 * 2 1 4 4 C 1.42905 * 114.00321 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47313 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46746 * 65.00288 * 5 4 3 7 7 C 1.42904 * 113.99648 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00040 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00114 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.62565 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.77399 * 233.58451 * 11 10 8 13 13 C 1.53044 * 109.31292 * 305.36923 * 12 11 10 14 14 C 1.53040 * 109.53629 * 61.36013 * 13 12 11 15 15 H 1.09000 * 109.52610 * 58.60811 * 14 13 12 16 16 C 1.53005 * 109.49252 * 178.68072 * 14 13 12 17 17 N 1.46505 * 109.46904 * 184.83936 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.46926 * 120.63185 * 179.97438 * 10 8 7 27 27 H 1.09003 * 109.47235 * 299.99423 * 1 2 3 28 28 H 1.09000 * 109.47137 * 59.99757 * 1 2 3 29 29 H 1.09003 * 109.47715 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47043 * 239.99817 * 2 1 3 31 31 H 1.09000 * 109.47137 * 120.00243 * 2 1 3 32 32 H 1.08998 * 109.46778 * 59.99918 * 4 3 2 33 33 H 1.09000 * 109.46817 * 300.00655 * 4 3 2 34 34 H 1.08999 * 109.47420 * 305.00260 * 5 4 3 35 35 H 1.08995 * 109.46886 * 184.99998 * 5 4 3 36 36 H 1.09001 * 109.47237 * 59.99841 * 7 6 5 37 37 H 1.08997 * 109.47450 * 299.99862 * 7 6 5 38 38 H 1.09004 * 109.59239 * 353.37153 * 11 10 8 39 39 H 1.09002 * 109.59102 * 113.80416 * 11 10 8 40 40 H 1.09006 * 109.49707 * 65.31720 * 12 11 10 41 41 H 1.08998 * 109.49965 * 185.37867 * 12 11 10 42 42 H 1.08997 * 109.46044 * 301.33925 * 13 12 11 43 43 H 1.09002 * 109.45789 * 181.37950 * 13 12 11 44 44 H 1.09003 * 109.46946 * 64.84695 * 16 14 13 45 45 H 1.08993 * 109.47679 * 304.84238 * 16 14 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.58221 * 6.62951 * 26 10 8 49 49 H 1.08991 * 109.70449 * 246.26731 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3976 3.5460 1.2204 7 6 3.7193 4.9346 1.3223 8 6 3.2238 5.4696 2.6411 9 8 2.6511 4.7343 3.4172 10 7 3.4162 6.7655 2.9578 11 6 4.1067 7.6688 2.0273 12 6 5.2635 8.3482 2.7669 13 6 4.7268 9.0330 4.0259 14 6 4.1088 7.9851 4.9544 15 1 4.8609 7.2405 5.2152 16 6 3.6020 8.6662 6.2273 17 7 3.1158 7.6503 7.1643 18 6 2.6107 8.0263 8.3803 19 1 2.5702 9.0717 8.6484 20 6 2.1447 7.0640 9.2658 21 7 2.1935 5.7901 8.9388 22 14 1.4484 7.5774 10.9214 23 1 1.5058 9.0562 11.0455 24 1 0.0378 7.1257 11.0267 25 1 2.2488 6.9585 12.0084 26 6 2.9384 7.3018 4.2395 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8340 0.9764 -0.8892 33 1 3.8332 0.9766 0.8908 34 1 3.3500 3.4409 -0.8424 35 1 4.9082 3.0252 -0.0892 36 1 3.2420 5.4789 0.5074 37 1 4.8000 5.0627 1.2608 38 1 4.4969 7.0974 1.1850 39 1 3.4093 8.4250 1.6668 40 1 6.0051 7.6002 3.0476 41 1 5.7247 9.0914 2.1164 42 1 3.9675 9.7634 3.7464 43 1 5.5439 9.5379 4.5411 44 1 2.7889 9.3473 5.9759 45 1 4.4155 9.2262 6.6884 46 1 3.1518 6.7114 6.9233 47 1 1.8683 5.1177 9.5577 48 1 2.5577 6.4882 4.8568 49 1 2.1449 8.0275 4.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752814489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:32 Heat of formation + Delta-G solvation = -120.497038 kcal Electronic energy + Delta-G solvation = -26614.482506 eV Core-core repulsion = 22770.058863 eV Total energy + Delta-G solvation = -3844.423643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.13371 -38.65072 -37.77240 -36.89661 -34.88529 -32.89458 -32.09091 -31.65989 -30.11650 -29.54418 -27.76618 -25.47316 -24.68725 -23.11007 -22.98309 -22.79566 -21.39271 -20.18182 -18.96346 -17.57061 -17.17520 -17.06973 -16.69590 -16.10821 -16.03114 -15.40151 -15.00432 -14.74210 -14.63538 -14.47565 -14.04911 -13.60947 -13.49691 -13.46280 -13.08462 -12.90936 -12.80283 -12.56718 -12.45702 -12.24996 -12.09237 -11.71053 -11.50684 -11.44739 -11.17555 -11.07792 -10.97921 -10.80625 -10.61778 -10.34834 -10.25542 -9.91594 -9.90269 -9.80668 -9.58746 -9.44473 -8.80934 -8.44922 -6.83467 -5.66054 -2.96028 2.74286 2.78974 3.43394 3.49685 3.54233 3.57378 3.70680 4.49875 4.62917 4.70017 4.74420 4.83289 4.85778 4.89413 4.91859 4.97787 5.00830 5.05873 5.13175 5.14333 5.18073 5.24230 5.34851 5.40071 5.43845 5.54232 5.66846 5.67690 5.72147 5.82160 5.85733 5.95086 5.98540 6.12186 6.16070 6.24951 6.43160 6.59594 6.63863 6.80970 6.89339 6.92603 7.02881 7.54135 7.78200 8.38161 8.51380 9.62358 10.20621 10.54758 11.56215 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.002877 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.687348 B = 9730.854194 C =11896.108521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.353 6.353 7 C 0.047 3.953 8 C 0.509 3.491 9 O -0.505 6.505 10 N -0.613 5.613 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.074 0.926 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.122 3.878 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.104 0.896 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -3.168 -25.757 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.270 6.270 7 C -0.033 4.033 8 C 0.295 3.705 9 O -0.378 6.378 10 N -0.349 5.349 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.127 4.127 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.001 3.999 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.122 0.878 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.890 -3.444 -25.047 25.960 hybrid contribution 0.069 -0.079 0.586 0.595 sum 5.959 -3.523 -24.461 25.422 Atomic orbital electron populations 1.21740 0.93676 1.02133 1.03398 1.22455 0.95834 0.83808 0.99838 1.87989 1.20301 1.26264 1.95355 1.22477 0.82506 0.95303 1.00892 1.22577 0.98271 0.92967 0.87649 1.88130 1.80602 1.20782 1.37534 1.22240 1.00103 0.84419 0.96510 1.20161 0.80379 0.81873 0.88048 1.90809 1.40174 1.56254 1.50599 1.48121 1.58441 1.08553 1.19776 1.21746 0.94581 0.93554 0.91816 1.21920 0.97519 1.00086 0.97699 1.21519 1.00510 0.97793 0.95213 1.21703 0.97624 0.97749 0.95628 0.90784 1.20632 0.95965 0.92128 0.88021 1.42432 1.74773 1.04878 1.15740 1.19242 1.33016 0.92552 0.92479 0.91190 1.24771 1.02136 0.95301 0.98783 1.69690 1.52494 0.99139 1.36327 0.86137 0.78498 0.77420 0.84240 1.20621 1.21878 1.21938 1.21721 0.95715 0.99588 0.82903 0.91434 0.92006 0.91193 0.93731 0.93242 0.91858 0.92148 0.92328 0.91658 0.90560 0.90591 0.90461 0.91173 0.91489 0.90871 0.91721 0.91496 0.96267 0.96088 0.78052 0.93526 0.87809 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.95 16 2 C 0.06 0.54 6.66 37.15 0.25 0.79 16 3 O -0.38 -4.70 10.31 -40.08 -0.41 -5.11 16 4 C 0.06 0.62 6.32 37.16 0.23 0.86 16 5 C 0.06 0.59 6.32 37.16 0.23 0.82 16 6 O -0.35 -5.05 9.84 -59.73 -0.59 -5.64 16 7 C 0.05 0.56 4.76 36.01 0.17 0.73 16 8 C 0.51 8.42 7.78 -10.98 -0.09 8.34 16 9 O -0.51 -11.33 15.91 -14.36 -0.23 -11.56 16 10 N -0.61 -8.84 2.97 -172.75 -0.51 -9.36 16 11 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 12 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 13 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 14 C -0.11 -1.78 2.38 -90.48 -0.22 -1.99 16 15 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.16 3.29 5.65 -4.04 -0.02 3.27 16 17 N -0.73 -19.39 5.38 -59.90 -0.32 -19.71 16 18 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -29.57 13.06 55.49 0.72 -28.85 16 22 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 C 0.12 2.13 5.52 -3.69 -0.02 2.11 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 37 H 0.08 0.66 7.69 -51.93 -0.40 0.27 16 38 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.39 10.95 6.89 -40.82 -0.28 10.67 16 47 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 48 H 0.10 2.29 6.21 -51.93 -0.32 1.97 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -37.74 394.45 -8.94 -46.68 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.88 Total: 5.05 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.36 Total: 4.36 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.11 Total: -57.91 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.23 Total: -22.31 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.74 -8.94 -46.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752814489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.820 kcal (2) G-P(sol) polarization free energy of solvation -37.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds