Wall clock time and date at job start Tue Mar 31 2020 10:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42894 * 109.47332 * 2 1 4 4 C 1.42905 * 114.00321 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47313 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.46746 * 65.00288 * 5 4 3 7 7 C 1.42904 * 113.99648 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00040 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00114 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.62565 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.77399 * 233.58451 * 11 10 8 13 13 C 1.53044 * 109.31292 * 305.36923 * 12 11 10 14 14 C 1.53040 * 109.53629 * 61.36013 * 13 12 11 15 15 H 1.09000 * 109.52610 * 58.60811 * 14 13 12 16 16 C 1.53005 * 109.49252 * 178.68072 * 14 13 12 17 17 N 1.46505 * 109.46904 * 184.83936 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.46926 * 120.63185 * 179.97438 * 10 8 7 27 27 H 1.09003 * 109.47235 * 299.99423 * 1 2 3 28 28 H 1.09000 * 109.47137 * 59.99757 * 1 2 3 29 29 H 1.09003 * 109.47715 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47043 * 239.99817 * 2 1 3 31 31 H 1.09000 * 109.47137 * 120.00243 * 2 1 3 32 32 H 1.08998 * 109.46778 * 59.99918 * 4 3 2 33 33 H 1.09000 * 109.46817 * 300.00655 * 4 3 2 34 34 H 1.08999 * 109.47420 * 305.00260 * 5 4 3 35 35 H 1.08995 * 109.46886 * 184.99998 * 5 4 3 36 36 H 1.09001 * 109.47237 * 59.99841 * 7 6 5 37 37 H 1.08997 * 109.47450 * 299.99862 * 7 6 5 38 38 H 1.09004 * 109.59239 * 353.37153 * 11 10 8 39 39 H 1.09002 * 109.59102 * 113.80416 * 11 10 8 40 40 H 1.09006 * 109.49707 * 65.31720 * 12 11 10 41 41 H 1.08998 * 109.49965 * 185.37867 * 12 11 10 42 42 H 1.08997 * 109.46044 * 301.33925 * 13 12 11 43 43 H 1.09002 * 109.45789 * 181.37950 * 13 12 11 44 44 H 1.09003 * 109.46946 * 64.84695 * 16 14 13 45 45 H 1.08993 * 109.47679 * 304.84238 * 16 14 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.58221 * 6.62951 * 26 10 8 49 49 H 1.08991 * 109.70449 * 246.26731 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3976 3.5460 1.2204 7 6 3.7193 4.9346 1.3223 8 6 3.2238 5.4696 2.6411 9 8 2.6511 4.7343 3.4172 10 7 3.4162 6.7655 2.9578 11 6 4.1067 7.6688 2.0273 12 6 5.2635 8.3482 2.7669 13 6 4.7268 9.0330 4.0259 14 6 4.1088 7.9851 4.9544 15 1 4.8609 7.2405 5.2152 16 6 3.6020 8.6662 6.2273 17 7 3.1158 7.6503 7.1643 18 6 2.6107 8.0263 8.3803 19 1 2.5702 9.0717 8.6484 20 6 2.1447 7.0640 9.2658 21 7 2.1935 5.7901 8.9388 22 14 1.4484 7.5774 10.9214 23 1 1.5058 9.0562 11.0455 24 1 0.0378 7.1257 11.0267 25 1 2.2488 6.9585 12.0084 26 6 2.9384 7.3018 4.2395 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8340 0.9764 -0.8892 33 1 3.8332 0.9766 0.8908 34 1 3.3500 3.4409 -0.8424 35 1 4.9082 3.0252 -0.0892 36 1 3.2420 5.4789 0.5074 37 1 4.8000 5.0627 1.2608 38 1 4.4969 7.0974 1.1850 39 1 3.4093 8.4250 1.6668 40 1 6.0051 7.6002 3.0476 41 1 5.7247 9.0914 2.1164 42 1 3.9675 9.7634 3.7464 43 1 5.5439 9.5379 4.5411 44 1 2.7889 9.3473 5.9759 45 1 4.4155 9.2262 6.6884 46 1 3.1518 6.7114 6.9233 47 1 1.8683 5.1177 9.5577 48 1 2.5577 6.4882 4.8568 49 1 2.1449 8.0275 4.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752814489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:32 Heat of formation + Delta-G solvation = -148.023380 kcal Electronic energy + Delta-G solvation = -26615.676138 eV Core-core repulsion = 22770.058863 eV Total energy + Delta-G solvation = -3845.617275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31792 -39.51516 -38.86284 -37.96518 -36.62110 -34.50911 -33.07449 -32.81841 -31.63935 -30.54876 -28.83817 -27.07129 -25.86312 -24.85106 -23.70200 -23.51574 -22.67861 -21.55258 -20.06860 -19.18236 -18.49208 -17.95529 -17.77478 -17.10131 -16.96662 -16.71903 -16.37292 -16.06205 -15.72985 -15.45779 -15.39248 -15.26869 -14.91018 -14.35782 -14.22470 -14.08559 -14.00070 -13.77635 -13.51002 -13.35138 -13.03991 -12.94335 -12.89829 -12.70185 -12.38339 -12.20776 -12.14460 -12.03826 -11.94076 -11.89111 -11.82508 -11.54406 -11.31027 -10.98951 -10.74733 -10.69609 -10.55303 -9.65566 -9.02952 -7.95742 -5.26766 1.43721 1.46492 1.55796 1.56571 1.71851 2.54288 2.75824 2.85716 3.37144 3.52273 3.73437 3.89760 3.91380 4.03808 4.11984 4.13464 4.15282 4.20444 4.22496 4.29256 4.32990 4.34600 4.45021 4.46763 4.50261 4.53595 4.63585 4.74092 4.76740 4.83608 4.87908 4.91327 4.92758 5.00761 5.03688 5.14527 5.23402 5.24714 5.35090 5.46467 5.50420 5.53583 6.07646 6.24564 6.30641 6.44952 7.18090 7.29632 8.06547 8.28419 9.28029 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.002877 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.687348 B = 9730.854194 C =11896.108521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.414 6.414 4 C 0.056 3.944 5 C 0.057 3.943 6 O -0.401 6.401 7 C 0.056 3.944 8 C 0.495 3.505 9 O -0.585 6.585 10 N -0.607 5.607 11 C 0.097 3.903 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.094 4.094 15 H 0.050 0.950 16 C 0.157 3.843 17 N -0.750 5.750 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.083 4.083 21 N -0.974 5.974 22 Si 0.979 3.021 23 H -0.260 1.260 24 H -0.295 1.295 25 H -0.293 1.293 26 C 0.128 3.872 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.029 0.971 46 H 0.369 0.631 47 H 0.250 0.750 48 H 0.043 0.957 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.227 -1.012 -28.781 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.020 4.020 5 C -0.019 4.019 6 O -0.321 6.321 7 C -0.023 4.023 8 C 0.284 3.716 9 O -0.464 6.464 10 N -0.341 5.341 11 C -0.024 4.024 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.114 4.114 15 H 0.068 0.932 16 C 0.030 3.970 17 N -0.393 5.393 18 C -0.376 4.376 19 H 0.099 0.901 20 C -0.275 4.275 21 N -0.624 5.624 22 Si 0.808 3.192 23 H -0.184 1.184 24 H -0.222 1.222 25 H -0.220 1.220 26 C 0.005 3.995 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.201 0.799 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.667 -1.193 -28.134 29.185 hybrid contribution -0.437 -0.700 1.456 1.674 sum 7.230 -1.893 -26.678 27.705 Atomic orbital electron populations 1.21774 0.93610 1.03278 1.02268 1.22625 0.96047 0.83078 1.00818 1.87947 1.22058 1.27843 1.95578 1.22741 0.81347 0.96085 1.01840 1.22885 1.00353 0.92409 0.86239 1.88086 1.81701 1.22139 1.40160 1.22344 1.02311 0.83813 0.93844 1.21305 0.79145 0.81846 0.89316 1.90773 1.43919 1.58376 1.53376 1.48236 1.57824 1.08890 1.19158 1.22236 0.94793 0.93684 0.91670 1.21929 0.97165 1.00686 0.96757 1.21522 1.00913 0.96545 0.95506 1.21556 0.96555 0.98315 0.94938 0.93177 1.20874 0.96087 0.91267 0.88764 1.42721 1.74967 1.05317 1.16264 1.19732 1.31666 0.92989 0.93262 0.90089 1.25719 1.03454 0.95286 1.03031 1.69894 1.54414 1.00442 1.37697 0.84989 0.77061 0.78042 0.79153 1.18419 1.22204 1.21968 1.21356 0.96342 0.97572 0.84237 0.93863 0.91749 0.88948 0.91095 0.93784 0.88323 0.93613 0.90848 0.88313 0.86950 0.86690 0.86582 0.89084 0.92138 0.86686 0.90294 0.90602 0.95520 0.95347 0.79923 0.94159 0.93797 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.28 71.98 0.74 -1.96 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.41 -10.28 10.31 -144.34 -1.49 -11.77 16 4 C 0.06 1.02 6.32 71.98 0.45 1.47 16 5 C 0.06 0.95 6.32 71.98 0.45 1.41 16 6 O -0.40 -11.30 9.84 -125.55 -1.24 -12.54 16 7 C 0.06 1.18 4.76 71.24 0.34 1.52 16 8 C 0.49 16.69 7.78 87.66 0.68 17.37 16 9 O -0.59 -28.53 15.91 16.00 0.25 -28.27 16 10 N -0.61 -17.17 2.97 -818.83 -2.43 -19.60 16 11 C 0.10 1.44 6.34 86.36 0.55 1.98 16 12 C -0.13 -1.83 6.08 30.67 0.19 -1.65 16 13 C -0.11 -2.27 5.17 30.62 0.16 -2.11 16 14 C -0.09 -3.14 2.38 -10.70 -0.03 -3.17 16 15 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.16 6.50 5.65 86.38 0.49 6.99 16 17 N -0.75 -41.40 5.38 -343.44 -1.85 -43.24 16 18 C -0.24 -14.53 9.99 84.04 0.84 -13.69 16 19 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 20 C -0.08 -5.12 5.50 84.86 0.47 -4.65 16 21 N -0.97 -65.03 13.06 21.65 0.28 -64.75 16 22 Si 0.98 48.84 29.55 68.60 2.03 50.87 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 25 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 26 C 0.13 4.66 5.52 86.37 0.48 5.14 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 37 H 0.12 1.51 7.69 -2.39 -0.02 1.49 16 38 H 0.12 0.88 5.93 -2.38 -0.01 0.87 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.37 22.53 6.89 -92.71 -0.64 21.89 16 47 H 0.25 16.11 8.31 -92.70 -0.77 15.34 16 48 H 0.04 2.14 6.21 -2.39 -0.01 2.12 16 49 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -91.64 394.45 2.12 -89.51 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.27 Total: 29.71 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.29 Total: 10.09 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -4.00 Total: -127.60 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -2.47 Total: -52.58 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -91.64 2.12 -89.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752814489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.509 kcal (2) G-P(sol) polarization free energy of solvation -91.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds