Wall clock time and date at job start Tue Mar 31 2020 10:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46631 * 2 1 4 4 C 1.42907 * 113.99898 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.56854 * 29.84180 * 4 3 2 6 6 C 1.53103 * 109.45414 * 269.63983 * 4 3 2 7 7 O 1.42903 * 109.48573 * 297.61277 * 6 4 3 8 8 C 1.42905 * 114.09605 * 298.88759 * 7 6 4 9 9 C 1.53090 * 109.41315 * 61.15929 * 8 7 6 10 10 C 1.53169 * 109.52317 * 149.99903 * 4 3 2 11 11 H 1.09003 * 109.54321 * 182.88262 * 10 4 3 12 12 C 1.52993 * 109.54723 * 303.06196 * 10 4 3 13 13 C 1.50702 * 109.47486 * 184.82380 * 12 10 4 14 14 O 1.21286 * 119.99787 * 359.97438 * 13 12 10 15 15 N 1.34774 * 120.00504 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00433 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47416 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47416 * 180.02562 * 17 16 15 19 19 C 1.46497 * 120.00126 * 89.99501 * 18 17 16 20 20 C 1.36935 * 119.99778 * 270.00365 * 18 17 16 21 21 H 1.08000 * 120.00061 * 142.04675 * 20 18 17 22 22 C 1.38820 * 119.99844 * 322.03822 * 20 18 17 23 23 N 1.31621 * 119.99728 * 157.02743 * 22 20 18 24 24 Si 1.86800 * 119.99984 * 337.02179 * 22 20 18 25 25 H 1.48505 * 109.46613 * 95.68454 * 24 22 20 26 26 H 1.48495 * 109.47340 * 215.68059 * 24 22 20 27 27 H 1.48496 * 109.47321 * 335.68696 * 24 22 20 28 28 H 1.09002 * 109.47844 * 59.99718 * 1 2 3 29 29 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46821 * 299.99363 * 1 2 3 31 31 H 1.09003 * 109.46821 * 240.00637 * 2 1 3 32 32 H 1.08999 * 109.47362 * 120.00436 * 2 1 3 33 33 H 1.08992 * 109.41085 * 177.62842 * 6 4 3 34 34 H 1.09011 * 109.48966 * 57.64489 * 6 4 3 35 35 H 1.08995 * 109.47847 * 301.17498 * 8 7 6 36 36 H 1.08996 * 109.48067 * 181.14136 * 8 7 6 37 37 H 1.09001 * 109.51931 * 182.48579 * 9 8 7 38 38 H 1.09002 * 109.52265 * 62.29809 * 9 8 7 39 39 H 1.09003 * 109.47382 * 64.82463 * 12 10 4 40 40 H 1.09004 * 109.47224 * 304.82237 * 12 10 4 41 41 H 0.97002 * 119.99685 * 0.02562 * 15 13 12 42 42 H 1.09003 * 109.46753 * 59.99685 * 16 15 13 43 43 H 1.09004 * 109.46831 * 300.00084 * 16 15 13 44 44 H 1.09004 * 109.47224 * 299.99886 * 17 16 15 45 45 H 1.09002 * 109.47012 * 59.99720 * 17 16 15 46 46 H 1.09004 * 109.47043 * 85.65443 * 19 18 17 47 47 H 1.08992 * 109.47174 * 205.65496 * 19 18 17 48 48 H 1.08998 * 109.47548 * 325.65976 * 19 18 17 49 49 H 0.96995 * 119.99701 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8650 0.6010 -0.5120 6 6 3.9390 1.5094 1.4428 7 8 3.4160 2.6694 2.0931 8 6 3.8085 3.9036 1.4892 9 6 3.2931 3.9517 0.0484 10 6 3.8420 2.7471 -0.7224 11 1 4.9294 2.8081 -0.7680 12 6 3.2697 2.7434 -2.1412 13 6 3.7720 3.9517 -2.8888 14 8 4.5143 4.7386 -2.3404 15 7 3.3955 4.1584 -4.1663 16 6 3.8834 5.3333 -4.8928 17 6 3.3112 5.3296 -6.3116 18 7 3.7995 6.5041 -7.0383 19 6 5.0460 6.4258 -7.8040 20 6 3.0909 7.6753 -7.0017 21 1 3.6117 8.6204 -6.9561 22 6 1.7032 7.6479 -7.0233 23 7 1.0173 8.6654 -6.5472 24 14 0.8091 6.1669 -7.7282 25 1 0.4427 5.2400 -6.6274 26 1 -0.4217 6.6177 -8.4261 27 1 1.6957 5.4657 -8.6913 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.0281 1.5530 1.4421 34 1 3.6114 0.6158 1.9744 35 1 4.8958 3.9786 1.4890 36 1 3.3867 4.7350 2.0540 37 1 3.6289 4.8727 -0.4280 38 1 2.2036 3.9175 0.0499 39 1 2.1810 2.7721 -2.0940 40 1 3.5872 1.8381 -2.6588 41 1 2.8009 3.5296 -4.6044 42 1 4.9720 5.3049 -4.9403 43 1 3.5658 6.2384 -4.3749 44 1 3.6291 4.4245 -6.8293 45 1 2.2225 5.3577 -6.2644 46 1 4.8362 6.0386 -8.8012 47 1 5.4855 7.4199 -7.8854 48 1 5.7437 5.7605 -7.2955 49 1 0.0477 8.6464 -6.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753057860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:49 Heat of formation + Delta-G solvation = -113.230035 kcal Electronic energy + Delta-G solvation = -27376.129313 eV Core-core repulsion = 23532.020791 eV Total energy + Delta-G solvation = -3844.108522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39118 -39.09932 -37.34970 -36.38815 -34.46999 -33.97059 -31.67153 -31.62858 -30.26987 -29.50461 -27.97114 -26.13744 -24.25440 -23.55165 -23.09585 -22.51469 -20.92614 -20.34144 -19.88135 -17.25596 -16.93073 -16.56997 -16.47877 -16.05774 -15.91533 -15.54575 -15.45112 -14.97900 -14.85392 -14.36387 -14.02246 -13.89564 -13.54859 -13.11377 -13.01972 -12.86209 -12.64495 -12.62788 -12.43411 -12.32291 -12.00792 -11.83266 -11.58712 -11.53823 -11.44930 -11.11681 -11.06259 -10.83006 -10.67366 -10.52663 -10.44308 -10.14682 -9.99249 -9.69350 -9.55216 -9.20325 -8.68189 -8.53430 -6.91467 -6.05424 -3.47940 2.89953 3.21709 3.33555 3.40331 3.45189 3.46036 3.82017 4.42585 4.45980 4.50031 4.64633 4.72741 4.79408 4.90677 5.00960 5.07246 5.10760 5.11327 5.19223 5.23290 5.32900 5.36762 5.40170 5.43463 5.53284 5.62644 5.66603 5.74804 5.80559 5.84795 5.86567 5.93878 6.11958 6.14637 6.23176 6.35469 6.48891 6.63277 6.67034 6.73377 6.88155 6.91307 7.15859 7.80254 7.98647 8.32965 8.51182 8.90850 9.63951 10.03643 11.09953 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.003004 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.972410 B = 9318.866992 C = 9923.155611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.059 3.941 5 H 0.068 0.932 6 C 0.043 3.957 7 O -0.375 6.375 8 C 0.062 3.938 9 C -0.152 4.152 10 C -0.066 4.066 11 H 0.089 0.911 12 C -0.133 4.133 13 C 0.509 3.491 14 O -0.543 6.543 15 N -0.727 5.727 16 C 0.100 3.900 17 C 0.129 3.871 18 N -0.607 5.607 19 C 0.124 3.876 20 C -0.275 4.275 21 H 0.080 0.920 22 C 0.037 3.963 23 N -0.894 5.894 24 Si 0.878 3.122 25 H -0.286 1.286 26 H -0.299 1.299 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.395 0.605 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.058 0.942 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.028 0.972 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -20.401 13.396 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.001 3.999 5 H 0.086 0.914 6 C -0.034 4.034 7 O -0.293 6.293 8 C -0.015 4.015 9 C -0.190 4.190 10 C -0.085 4.085 11 H 0.108 0.892 12 C -0.173 4.173 13 C 0.295 3.705 14 O -0.421 6.421 15 N -0.378 5.378 16 C -0.026 4.026 17 C 0.002 3.998 18 N -0.331 5.331 19 C -0.021 4.021 20 C -0.404 4.404 21 H 0.098 0.902 22 C -0.164 4.164 23 N -0.535 5.535 24 Si 0.708 3.292 25 H -0.214 1.214 26 H -0.227 1.227 27 H -0.194 1.194 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.228 0.772 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.918 -19.541 13.922 24.311 hybrid contribution -0.641 -1.353 -0.930 1.762 sum 3.277 -20.894 12.992 24.821 Atomic orbital electron populations 1.21727 0.93708 1.02054 1.03352 1.22507 0.95767 0.84241 0.99622 1.88021 1.19804 1.25673 1.94899 1.22837 0.82552 0.98359 0.96179 0.91369 1.23005 0.97684 0.89657 0.93101 1.87938 1.74121 1.13654 1.53609 1.22618 0.98671 0.86308 0.93870 1.22296 1.01890 0.99512 0.95266 1.21021 1.00673 0.93796 0.92968 0.89246 1.21651 1.03357 0.96893 0.95423 1.20603 0.80878 0.87241 0.81815 1.90651 1.36697 1.47317 1.67428 1.46155 1.50514 1.27827 1.13261 1.22232 0.98694 0.87353 0.94272 1.21320 0.98372 0.90302 0.89780 1.43915 1.25405 1.10145 1.53648 1.21114 0.87807 0.99593 0.93570 1.18816 0.88546 0.85188 1.47828 0.90211 1.25498 0.96617 0.96465 0.97840 1.69888 1.06865 1.32266 1.44452 0.86919 0.79006 0.83481 0.79811 1.21384 1.22703 1.19438 0.91762 0.91330 0.91762 0.93591 0.93701 0.92435 0.89112 0.93311 0.88846 0.88614 0.90751 0.88139 0.89449 0.77170 0.92359 0.90659 0.93892 0.92429 0.97310 0.93382 0.95372 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.44 6.47 37.16 0.24 0.68 16 3 O -0.36 -3.85 8.72 -42.62 -0.37 -4.22 16 4 C 0.06 0.55 2.44 -26.59 -0.06 0.49 16 5 H 0.07 0.50 7.79 -51.92 -0.40 0.10 16 6 C 0.04 0.40 6.48 37.21 0.24 0.64 16 7 O -0.37 -4.54 10.70 -42.62 -0.46 -5.00 16 8 C 0.06 0.71 6.84 37.20 0.25 0.96 16 9 C -0.15 -1.94 4.97 -26.59 -0.13 -2.07 16 10 C -0.07 -0.73 1.75 -90.44 -0.16 -0.89 16 11 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 12 C -0.13 -1.50 4.93 -27.89 -0.14 -1.64 16 13 C 0.51 7.83 7.57 -10.99 -0.08 7.75 16 14 O -0.54 -10.21 13.99 5.55 0.08 -10.13 16 15 N -0.73 -11.41 5.56 -60.29 -0.33 -11.74 16 16 C 0.10 1.94 6.00 -4.05 -0.02 1.92 16 17 C 0.13 2.68 4.65 -4.05 -0.02 2.66 16 18 N -0.61 -14.38 2.47 -181.12 -0.45 -14.82 16 19 C 0.12 2.46 10.70 59.85 0.64 3.10 16 20 C -0.28 -7.69 9.88 -15.06 -0.15 -7.83 16 21 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 22 C 0.04 1.06 5.29 -17.43 -0.09 0.96 16 23 N -0.89 -27.13 13.97 55.49 0.78 -26.36 16 24 Si 0.88 21.66 25.10 -169.99 -4.27 17.39 16 25 H -0.29 -6.70 6.68 56.52 0.38 -6.32 16 26 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.04 0.31 7.86 -51.93 -0.41 -0.10 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.71 7.86 -51.92 -0.41 0.31 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.44 6.05 -51.93 -0.31 1.12 16 38 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 39 H 0.10 1.14 7.77 -51.93 -0.40 0.73 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.40 5.12 8.47 -40.82 -0.35 4.78 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.06 1.30 3.38 -51.93 -0.18 1.13 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 48 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -33.29 384.67 -7.09 -40.38 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.77 Total: 2.72 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 0.90 Total: 5.98 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.01 Total: -52.92 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.75 Total: -19.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.27 Total: 17.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.29 -7.09 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753057860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.848 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds