Wall clock time and date at job start Tue Mar 31 2020 10:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46631 * 2 1 4 4 C 1.42907 * 113.99898 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.56854 * 29.84180 * 4 3 2 6 6 C 1.53103 * 109.45414 * 269.63983 * 4 3 2 7 7 O 1.42903 * 109.48573 * 297.61277 * 6 4 3 8 8 C 1.42905 * 114.09605 * 298.88759 * 7 6 4 9 9 C 1.53090 * 109.41315 * 61.15929 * 8 7 6 10 10 C 1.53169 * 109.52317 * 149.99903 * 4 3 2 11 11 H 1.09003 * 109.54321 * 182.88262 * 10 4 3 12 12 C 1.52993 * 109.54723 * 303.06196 * 10 4 3 13 13 C 1.50702 * 109.47486 * 184.82380 * 12 10 4 14 14 O 1.21286 * 119.99787 * 359.97438 * 13 12 10 15 15 N 1.34774 * 120.00504 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00433 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47416 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47416 * 180.02562 * 17 16 15 19 19 C 1.46497 * 120.00126 * 89.99501 * 18 17 16 20 20 C 1.36935 * 119.99778 * 270.00365 * 18 17 16 21 21 H 1.08000 * 120.00061 * 142.04675 * 20 18 17 22 22 C 1.38820 * 119.99844 * 322.03822 * 20 18 17 23 23 N 1.31621 * 119.99728 * 157.02743 * 22 20 18 24 24 Si 1.86800 * 119.99984 * 337.02179 * 22 20 18 25 25 H 1.48505 * 109.46613 * 95.68454 * 24 22 20 26 26 H 1.48495 * 109.47340 * 215.68059 * 24 22 20 27 27 H 1.48496 * 109.47321 * 335.68696 * 24 22 20 28 28 H 1.09002 * 109.47844 * 59.99718 * 1 2 3 29 29 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46821 * 299.99363 * 1 2 3 31 31 H 1.09003 * 109.46821 * 240.00637 * 2 1 3 32 32 H 1.08999 * 109.47362 * 120.00436 * 2 1 3 33 33 H 1.08992 * 109.41085 * 177.62842 * 6 4 3 34 34 H 1.09011 * 109.48966 * 57.64489 * 6 4 3 35 35 H 1.08995 * 109.47847 * 301.17498 * 8 7 6 36 36 H 1.08996 * 109.48067 * 181.14136 * 8 7 6 37 37 H 1.09001 * 109.51931 * 182.48579 * 9 8 7 38 38 H 1.09002 * 109.52265 * 62.29809 * 9 8 7 39 39 H 1.09003 * 109.47382 * 64.82463 * 12 10 4 40 40 H 1.09004 * 109.47224 * 304.82237 * 12 10 4 41 41 H 0.97002 * 119.99685 * 0.02562 * 15 13 12 42 42 H 1.09003 * 109.46753 * 59.99685 * 16 15 13 43 43 H 1.09004 * 109.46831 * 300.00084 * 16 15 13 44 44 H 1.09004 * 109.47224 * 299.99886 * 17 16 15 45 45 H 1.09002 * 109.47012 * 59.99720 * 17 16 15 46 46 H 1.09004 * 109.47043 * 85.65443 * 19 18 17 47 47 H 1.08992 * 109.47174 * 205.65496 * 19 18 17 48 48 H 1.08998 * 109.47548 * 325.65976 * 19 18 17 49 49 H 0.96995 * 119.99701 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8650 0.6010 -0.5120 6 6 3.9390 1.5094 1.4428 7 8 3.4160 2.6694 2.0931 8 6 3.8085 3.9036 1.4892 9 6 3.2931 3.9517 0.0484 10 6 3.8420 2.7471 -0.7224 11 1 4.9294 2.8081 -0.7680 12 6 3.2697 2.7434 -2.1412 13 6 3.7720 3.9517 -2.8888 14 8 4.5143 4.7386 -2.3404 15 7 3.3955 4.1584 -4.1663 16 6 3.8834 5.3333 -4.8928 17 6 3.3112 5.3296 -6.3116 18 7 3.7995 6.5041 -7.0383 19 6 5.0460 6.4258 -7.8040 20 6 3.0909 7.6753 -7.0017 21 1 3.6117 8.6204 -6.9561 22 6 1.7032 7.6479 -7.0233 23 7 1.0173 8.6654 -6.5472 24 14 0.8091 6.1669 -7.7282 25 1 0.4427 5.2400 -6.6274 26 1 -0.4217 6.6177 -8.4261 27 1 1.6957 5.4657 -8.6913 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.0281 1.5530 1.4421 34 1 3.6114 0.6158 1.9744 35 1 4.8958 3.9786 1.4890 36 1 3.3867 4.7350 2.0540 37 1 3.6289 4.8727 -0.4280 38 1 2.2036 3.9175 0.0499 39 1 2.1810 2.7721 -2.0940 40 1 3.5872 1.8381 -2.6588 41 1 2.8009 3.5296 -4.6044 42 1 4.9720 5.3049 -4.9403 43 1 3.5658 6.2384 -4.3749 44 1 3.6291 4.4245 -6.8293 45 1 2.2225 5.3577 -6.2644 46 1 4.8362 6.0386 -8.8012 47 1 5.4855 7.4199 -7.8854 48 1 5.7437 5.7605 -7.2955 49 1 0.0477 8.6464 -6.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753057860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:48 Heat of formation + Delta-G solvation = -137.438353 kcal Electronic energy + Delta-G solvation = -27377.179065 eV Core-core repulsion = 23532.020791 eV Total energy + Delta-G solvation = -3845.158273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34866 -40.22260 -38.12473 -38.07854 -35.71012 -35.17800 -33.75482 -32.30481 -31.26779 -30.56113 -29.17023 -28.03209 -25.43732 -24.45031 -24.10674 -23.47510 -22.72171 -21.46808 -20.87703 -18.90638 -17.98510 -17.63909 -17.57447 -17.33901 -16.93601 -16.80606 -16.60597 -16.16227 -15.83696 -15.62947 -15.23758 -15.17143 -14.89502 -14.58247 -14.35011 -14.18844 -13.86125 -13.71265 -13.59223 -13.30857 -13.17976 -13.04811 -12.75766 -12.71323 -12.47917 -12.37234 -12.32523 -12.11283 -11.99536 -11.92014 -11.66816 -11.58069 -11.26973 -10.91265 -10.78537 -10.68682 -10.06802 -9.98843 -8.85431 -8.23777 -5.64806 1.27379 1.41468 1.53354 1.67946 2.18233 2.39867 2.68254 3.03587 3.05253 3.43450 3.65159 3.70380 3.81316 3.90332 4.08618 4.11656 4.22618 4.24817 4.28108 4.35197 4.43738 4.47311 4.49877 4.54544 4.54819 4.58800 4.69737 4.75507 4.78462 4.86578 4.90479 4.95131 4.99326 5.05363 5.09690 5.10242 5.13442 5.19057 5.32563 5.33881 5.49134 5.89511 6.12866 6.17431 6.45810 6.59721 6.92681 7.30493 7.56615 7.97233 8.95881 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.003004 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.972410 B = 9318.866992 C = 9923.155611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.389 6.389 4 C 0.064 3.936 5 H 0.099 0.901 6 C 0.035 3.965 7 O -0.394 6.394 8 C 0.064 3.936 9 C -0.148 4.148 10 C -0.066 4.066 11 H 0.088 0.912 12 C -0.120 4.120 13 C 0.505 3.495 14 O -0.582 6.582 15 N -0.720 5.720 16 C 0.118 3.882 17 C 0.129 3.871 18 N -0.623 5.623 19 C 0.122 3.878 20 C -0.272 4.272 21 H 0.036 0.964 22 C -0.022 4.022 23 N -0.947 5.947 24 Si 0.949 3.051 25 H -0.264 1.264 26 H -0.307 1.307 27 H -0.253 1.253 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.413 0.587 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.024 0.976 47 H 0.039 0.961 48 H 0.059 0.941 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 -24.886 13.009 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.309 6.309 4 C 0.006 3.994 5 H 0.117 0.883 6 C -0.042 4.042 7 O -0.313 6.313 8 C -0.012 4.012 9 C -0.186 4.186 10 C -0.085 4.085 11 H 0.106 0.894 12 C -0.160 4.160 13 C 0.293 3.707 14 O -0.462 6.462 15 N -0.373 5.373 16 C -0.009 4.009 17 C 0.003 3.997 18 N -0.347 5.347 19 C -0.022 4.022 20 C -0.402 4.402 21 H 0.054 0.946 22 C -0.219 4.219 23 N -0.590 5.590 24 Si 0.776 3.224 25 H -0.191 1.191 26 H -0.236 1.236 27 H -0.177 1.177 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.249 0.751 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.042 0.958 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.341 -24.090 13.529 27.968 hybrid contribution -0.680 0.097 -0.745 1.013 sum 3.661 -23.993 12.784 27.432 Atomic orbital electron populations 1.21750 0.93862 1.03003 1.02230 1.22686 0.95715 0.83270 1.00965 1.88005 1.20383 1.27458 1.95042 1.22816 0.82397 0.98044 0.96113 0.88330 1.23261 0.98635 0.89088 0.93214 1.87908 1.74708 1.14380 1.54275 1.22567 0.99009 0.86615 0.93017 1.22178 1.00844 0.99254 0.96338 1.21028 1.00489 0.94131 0.92857 0.89371 1.21642 1.03274 0.95945 0.95116 1.21400 0.79955 0.87918 0.81426 1.90647 1.38504 1.48910 1.68121 1.46002 1.50832 1.26923 1.13494 1.21724 0.98536 0.87035 0.93592 1.21394 0.97422 0.90551 0.90313 1.44068 1.26172 1.09554 1.54949 1.21234 0.86667 1.00116 0.94221 1.18679 0.88957 0.85675 1.46893 0.94607 1.26207 0.97480 1.00029 0.98208 1.70035 1.07084 1.35317 1.46595 0.85769 0.77243 0.79901 0.79458 1.19051 1.23597 1.17709 0.92658 0.89365 0.93096 0.91836 0.92634 0.90971 0.87506 0.92558 0.88863 0.91583 0.92301 0.87813 0.85748 0.75143 0.92281 0.95527 0.89729 0.94011 0.95785 0.94243 0.92263 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.63 6.47 71.98 0.47 1.09 16 3 O -0.39 -7.23 8.72 -141.92 -1.24 -8.47 16 4 C 0.06 1.00 2.44 30.69 0.07 1.08 16 5 H 0.10 0.97 7.79 -2.38 -0.02 0.95 16 6 C 0.03 0.56 6.48 72.02 0.47 1.02 16 7 O -0.39 -9.09 10.70 -141.92 -1.52 -10.61 16 8 C 0.06 1.46 6.84 72.01 0.49 1.96 16 9 C -0.15 -3.80 4.97 30.68 0.15 -3.65 16 10 C -0.07 -1.35 1.75 -10.68 -0.02 -1.37 16 11 H 0.09 1.85 7.96 -2.39 -0.02 1.83 16 12 C -0.12 -2.39 4.93 29.85 0.15 -2.24 16 13 C 0.50 14.90 7.57 87.66 0.66 15.56 16 14 O -0.58 -22.05 13.99 -3.05 -0.04 -22.09 16 15 N -0.72 -21.21 5.56 -463.06 -2.57 -23.79 16 16 C 0.12 4.49 6.00 86.38 0.52 5.01 16 17 C 0.13 5.06 4.65 86.38 0.40 5.46 16 18 N -0.62 -28.91 2.47 -726.95 -1.79 -30.71 16 19 C 0.12 4.58 10.70 127.77 1.37 5.94 16 20 C -0.27 -15.60 9.88 84.04 0.83 -14.77 16 21 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 22 C -0.02 -1.30 5.29 84.86 0.45 -0.86 16 23 N -0.95 -59.60 13.97 21.65 0.30 -59.30 16 24 Si 0.95 44.43 25.10 68.60 1.72 46.15 16 25 H -0.26 -11.32 6.68 99.48 0.66 -10.65 16 26 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.25 -11.10 7.11 99.48 0.71 -10.40 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.06 0.58 7.86 -2.39 -0.02 0.56 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.35 7.86 -2.38 -0.02 1.33 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.08 6.05 -2.39 -0.01 2.07 16 38 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 39 H 0.10 2.08 7.77 -2.39 -0.02 2.06 16 40 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.41 9.30 8.47 -92.71 -0.79 8.52 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 45 H 0.04 1.78 3.38 -2.39 -0.01 1.77 16 46 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 48 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 49 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.90 384.67 1.70 -74.20 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.09 Total: 21.56 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.75 Total: 13.05 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.06 Total: -113.80 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.80 Total: -41.17 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.72 Total: 46.15 kcal Total: -75.90 1.70 -74.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753057860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.237 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds