Wall clock time and date at job start Tue Mar 31 2020 10:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47409 * 2 1 4 4 C 1.42895 * 114.00464 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.57428 * 330.15431 * 4 3 2 6 6 C 1.53099 * 109.52341 * 90.31018 * 4 3 2 7 7 O 1.42898 * 109.41694 * 177.51712 * 6 4 3 8 8 C 1.42900 * 114.09637 * 298.84350 * 7 6 4 9 9 C 1.53090 * 109.41738 * 61.15848 * 8 7 6 10 10 C 1.53173 * 109.52670 * 209.99395 * 4 3 2 11 11 H 1.08997 * 109.54625 * 303.06995 * 10 4 3 12 12 C 1.53007 * 109.53993 * 63.24675 * 10 4 3 13 13 C 1.50703 * 109.46980 * 185.00086 * 12 10 4 14 14 O 1.21281 * 120.00271 * 0.02562 * 13 12 10 15 15 N 1.34771 * 119.99842 * 180.02562 * 13 12 10 16 16 C 1.46504 * 120.00024 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47288 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47289 * 179.97438 * 17 16 15 19 19 C 1.46505 * 119.99541 * 89.99868 * 18 17 16 20 20 C 1.36931 * 120.00219 * 269.72606 * 18 17 16 21 21 H 1.08004 * 119.99896 * 334.88217 * 20 18 17 22 22 C 1.38807 * 120.00289 * 154.88434 * 20 18 17 23 23 N 1.31620 * 119.99732 * 3.91413 * 22 20 18 24 24 Si 1.86797 * 120.00183 * 183.91706 * 22 20 18 25 25 H 1.48499 * 109.47300 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47301 * 120.00030 * 24 22 20 27 27 H 1.48509 * 109.47046 * 239.99920 * 24 22 20 28 28 H 1.09001 * 109.47197 * 60.00240 * 1 2 3 29 29 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47202 * 300.00279 * 1 2 3 31 31 H 1.08996 * 109.47514 * 239.99489 * 2 1 3 32 32 H 1.09004 * 109.47441 * 119.99292 * 2 1 3 33 33 H 1.09005 * 109.47733 * 297.49888 * 6 4 3 34 34 H 1.08995 * 109.48080 * 57.53262 * 6 4 3 35 35 H 1.09006 * 109.48203 * 181.13977 * 8 7 6 36 36 H 1.09001 * 109.47897 * 301.16166 * 8 7 6 37 37 H 1.09001 * 109.52331 * 182.48915 * 9 8 7 38 38 H 1.08998 * 109.52533 * 62.29670 * 9 8 7 39 39 H 1.08995 * 109.46874 * 65.00086 * 12 10 4 40 40 H 1.09003 * 109.46940 * 304.99964 * 12 10 4 41 41 H 0.97003 * 119.99836 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47349 * 59.99543 * 16 15 13 43 43 H 1.09003 * 109.46885 * 299.99596 * 16 15 13 44 44 H 1.09000 * 109.47249 * 59.99542 * 17 16 15 45 45 H 1.08997 * 109.46920 * 300.00095 * 17 16 15 46 46 H 1.08994 * 109.46983 * 264.18967 * 19 18 17 47 47 H 1.08993 * 109.46995 * 24.19399 * 19 18 17 48 48 H 1.09003 * 109.46572 * 144.19665 * 19 18 17 49 49 H 0.97001 * 119.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8650 0.6011 0.5120 6 6 3.9408 1.5081 -1.4422 7 8 5.3595 1.6791 -1.4390 8 6 5.8000 2.8889 -0.8191 9 6 5.3648 2.8964 0.6486 10 6 3.8421 2.7471 0.7222 11 1 3.3669 3.6023 0.2419 12 6 3.4052 2.6745 2.1868 13 6 3.6999 3.9879 2.8645 14 8 4.2088 4.8930 2.2378 15 7 3.3979 4.1567 4.1671 16 6 3.6838 5.4337 4.8259 17 6 3.2470 5.3611 6.2904 18 7 3.5335 6.6378 6.9492 19 6 2.5254 7.7009 6.9563 20 6 4.7414 6.8356 7.5633 21 1 5.3084 5.9902 7.9244 22 6 5.2370 8.1224 7.7218 23 7 4.5123 9.1569 7.3518 24 14 6.9326 8.3859 8.4600 25 1 7.5381 7.0710 8.7911 26 1 7.7941 9.0956 7.4806 27 1 6.8132 9.2007 9.6959 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.6881 0.5763 -1.9482 34 1 3.4752 2.3436 -1.9647 35 1 6.8868 2.9519 -0.8762 36 1 5.3588 3.7425 -1.3336 37 1 5.6612 3.8376 1.1117 38 1 5.8380 2.0663 1.1732 39 1 3.9505 1.8758 2.6895 40 1 2.3354 2.4717 2.2372 41 1 2.9905 3.4329 4.6683 42 1 3.1378 6.2320 4.3233 43 1 4.7535 5.6371 4.7750 44 1 3.7927 4.5627 6.7932 45 1 2.1774 5.1578 6.3408 46 1 2.7205 8.3920 6.1364 47 1 1.5348 7.2629 6.8344 48 1 2.5711 8.2386 7.9034 49 1 4.8588 10.0562 7.4621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753057861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:51 Heat of formation + Delta-G solvation = -118.021562 kcal Electronic energy + Delta-G solvation = -26917.738671 eV Core-core repulsion = 23073.422373 eV Total energy + Delta-G solvation = -3844.316298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39722 -39.06860 -37.72329 -36.09452 -34.52471 -34.00748 -31.82841 -31.38235 -30.12864 -29.24235 -27.59481 -25.88145 -24.28438 -23.66509 -22.91177 -22.68511 -20.63564 -20.48837 -19.84764 -17.48552 -16.99275 -16.74810 -16.48184 -16.10837 -15.73434 -15.47252 -15.30446 -14.91067 -14.72565 -14.46221 -13.92679 -13.73027 -13.44700 -13.20307 -13.04941 -12.84657 -12.62659 -12.57338 -12.42964 -12.24230 -11.90643 -11.75184 -11.40729 -11.17299 -11.10479 -10.94397 -10.90694 -10.80131 -10.62762 -10.58307 -10.23988 -10.22789 -10.02445 -9.90016 -9.64866 -9.28866 -8.61571 -8.51827 -6.80737 -5.76453 -3.24368 2.91900 3.16457 3.36187 3.43692 3.45672 3.49445 3.76712 4.41533 4.43098 4.49523 4.57700 4.70998 4.77637 4.84413 4.91110 5.00205 5.08755 5.14562 5.26002 5.30763 5.34558 5.39377 5.42091 5.48710 5.56247 5.64735 5.66551 5.70414 5.78211 5.83609 5.88559 5.98858 6.10581 6.13811 6.27637 6.70222 6.74749 6.74888 6.76738 6.98984 7.05209 7.46227 7.74701 7.83315 7.84674 8.38561 8.54958 9.22230 9.82319 10.31578 11.28310 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002560 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.321705 B =10934.654203 C =12000.206295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.062 3.938 5 H 0.070 0.930 6 C 0.043 3.957 7 O -0.381 6.381 8 C 0.058 3.942 9 C -0.154 4.154 10 C -0.068 4.068 11 H 0.089 0.911 12 C -0.134 4.134 13 C 0.507 3.493 14 O -0.543 6.543 15 N -0.726 5.726 16 C 0.095 3.905 17 C 0.145 3.855 18 N -0.600 5.600 19 C 0.165 3.835 20 C -0.259 4.259 21 H 0.070 0.930 22 C 0.006 3.994 23 N -0.906 5.906 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.290 1.290 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.395 0.605 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.026 0.974 47 H -0.008 1.008 48 H 0.054 0.946 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -20.003 -15.339 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.295 6.295 4 C 0.004 3.996 5 H 0.088 0.912 6 C -0.034 4.034 7 O -0.300 6.300 8 C -0.018 4.018 9 C -0.192 4.192 10 C -0.087 4.087 11 H 0.107 0.893 12 C -0.174 4.174 13 C 0.293 3.707 14 O -0.420 6.420 15 N -0.377 5.377 16 C -0.031 4.031 17 C 0.017 3.983 18 N -0.323 5.323 19 C 0.021 3.979 20 C -0.389 4.389 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.551 5.551 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.216 1.216 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.227 0.773 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.045 0.955 47 H 0.011 0.989 48 H 0.073 0.927 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.184 -19.087 -15.799 25.314 hybrid contribution 0.695 -0.109 0.703 0.994 sum -4.490 -19.196 -15.096 24.830 Atomic orbital electron populations 1.21749 0.93616 1.02246 1.03317 1.22545 0.95697 0.83850 1.00095 1.87950 1.20204 1.26352 1.94974 1.22809 0.81492 0.98858 0.96465 0.91245 1.22988 0.81972 1.02399 0.96072 1.87928 1.20855 1.41781 1.79404 1.22678 1.00202 0.86602 0.92334 1.22412 0.94356 1.04850 0.97546 1.21014 0.96292 0.97079 0.94282 0.89288 1.21672 1.03866 0.96137 0.95746 1.20585 0.78376 0.89562 0.82220 1.90664 1.43380 1.43639 1.64367 1.46220 1.63301 1.17542 1.10638 1.22481 1.01809 0.83400 0.95419 1.20973 0.97446 0.90416 0.89503 1.43879 1.15222 1.12103 1.61136 1.20923 0.85846 0.89500 1.01672 1.19246 0.95871 0.92438 1.31320 0.91216 1.25195 0.97999 0.95995 1.00005 1.70095 1.35957 0.97808 1.51259 0.86176 0.84357 0.77827 0.78174 1.20287 1.21466 1.21645 0.91833 0.91137 0.91675 0.93465 0.93220 0.89078 0.92234 0.88526 0.92718 0.87838 0.91440 0.89374 0.88339 0.77257 0.92323 0.91436 0.93438 0.94096 0.95540 0.98912 0.92693 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.15 0.38 -0.55 16 2 C 0.05 0.38 6.47 37.15 0.24 0.62 16 3 O -0.38 -3.61 9.38 -35.23 -0.33 -3.94 16 4 C 0.06 0.58 2.21 -26.59 -0.06 0.52 16 5 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 6 C 0.04 0.40 6.47 37.21 0.24 0.64 16 7 O -0.38 -4.19 10.77 -35.23 -0.38 -4.57 16 8 C 0.06 0.60 6.84 37.20 0.25 0.86 16 9 C -0.15 -1.74 5.13 -26.59 -0.14 -1.87 16 10 C -0.07 -0.75 1.64 -90.44 -0.15 -0.90 16 11 H 0.09 1.17 7.95 -51.93 -0.41 0.75 16 12 C -0.13 -1.45 5.12 -27.88 -0.14 -1.59 16 13 C 0.51 7.64 7.57 -10.99 -0.08 7.55 16 14 O -0.54 -10.35 14.01 5.56 0.08 -10.27 16 15 N -0.73 -10.71 5.56 -60.29 -0.33 -11.05 16 16 C 0.09 1.83 6.00 -4.04 -0.02 1.81 16 17 C 0.15 2.87 5.82 -4.04 -0.02 2.84 16 18 N -0.60 -15.10 2.93 -181.12 -0.53 -15.63 16 19 C 0.16 4.12 8.99 59.85 0.54 4.66 16 20 C -0.26 -7.11 9.66 -15.06 -0.15 -7.26 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 23 N -0.91 -26.51 10.13 55.49 0.56 -25.95 16 24 Si 0.90 21.93 29.56 -169.99 -5.02 16.91 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.28 7.96 -51.93 -0.41 -0.13 16 32 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.09 0.71 7.96 -51.93 -0.41 0.30 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.42 6.07 -51.93 -0.32 1.11 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.97 7.65 -51.93 -0.40 0.57 16 41 H 0.39 4.46 8.47 -40.82 -0.35 4.11 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 45 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 46 H 0.03 0.71 7.43 -51.93 -0.39 0.33 16 47 H -0.01 -0.17 7.83 -51.93 -0.41 -0.57 16 48 H 0.05 1.48 7.04 -51.93 -0.37 1.11 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -32.51 388.92 -8.18 -40.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.88 Total: 0.52 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 0.80 Total: 7.43 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.30 Total: -52.63 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.63 Total: -18.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.51 -8.18 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753057861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.335 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds