Wall clock time and date at job start Tue Mar 31 2020 10:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42899 * 109.47409 * 2 1 4 4 C 1.42895 * 114.00464 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.57428 * 330.15431 * 4 3 2 6 6 C 1.53099 * 109.52341 * 90.31018 * 4 3 2 7 7 O 1.42898 * 109.41694 * 177.51712 * 6 4 3 8 8 C 1.42900 * 114.09637 * 298.84350 * 7 6 4 9 9 C 1.53090 * 109.41738 * 61.15848 * 8 7 6 10 10 C 1.53173 * 109.52670 * 209.99395 * 4 3 2 11 11 H 1.08997 * 109.54625 * 303.06995 * 10 4 3 12 12 C 1.53007 * 109.53993 * 63.24675 * 10 4 3 13 13 C 1.50703 * 109.46980 * 185.00086 * 12 10 4 14 14 O 1.21281 * 120.00271 * 0.02562 * 13 12 10 15 15 N 1.34771 * 119.99842 * 180.02562 * 13 12 10 16 16 C 1.46504 * 120.00024 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47288 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47289 * 179.97438 * 17 16 15 19 19 C 1.46505 * 119.99541 * 89.99868 * 18 17 16 20 20 C 1.36931 * 120.00219 * 269.72606 * 18 17 16 21 21 H 1.08004 * 119.99896 * 334.88217 * 20 18 17 22 22 C 1.38807 * 120.00289 * 154.88434 * 20 18 17 23 23 N 1.31620 * 119.99732 * 3.91413 * 22 20 18 24 24 Si 1.86797 * 120.00183 * 183.91706 * 22 20 18 25 25 H 1.48499 * 109.47300 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47301 * 120.00030 * 24 22 20 27 27 H 1.48509 * 109.47046 * 239.99920 * 24 22 20 28 28 H 1.09001 * 109.47197 * 60.00240 * 1 2 3 29 29 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47202 * 300.00279 * 1 2 3 31 31 H 1.08996 * 109.47514 * 239.99489 * 2 1 3 32 32 H 1.09004 * 109.47441 * 119.99292 * 2 1 3 33 33 H 1.09005 * 109.47733 * 297.49888 * 6 4 3 34 34 H 1.08995 * 109.48080 * 57.53262 * 6 4 3 35 35 H 1.09006 * 109.48203 * 181.13977 * 8 7 6 36 36 H 1.09001 * 109.47897 * 301.16166 * 8 7 6 37 37 H 1.09001 * 109.52331 * 182.48915 * 9 8 7 38 38 H 1.08998 * 109.52533 * 62.29670 * 9 8 7 39 39 H 1.08995 * 109.46874 * 65.00086 * 12 10 4 40 40 H 1.09003 * 109.46940 * 304.99964 * 12 10 4 41 41 H 0.97003 * 119.99836 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47349 * 59.99543 * 16 15 13 43 43 H 1.09003 * 109.46885 * 299.99596 * 16 15 13 44 44 H 1.09000 * 109.47249 * 59.99542 * 17 16 15 45 45 H 1.08997 * 109.46920 * 300.00095 * 17 16 15 46 46 H 1.08994 * 109.46983 * 264.18967 * 19 18 17 47 47 H 1.08993 * 109.46995 * 24.19399 * 19 18 17 48 48 H 1.09003 * 109.46572 * 144.19665 * 19 18 17 49 49 H 0.97001 * 119.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8650 0.6011 0.5120 6 6 3.9408 1.5081 -1.4422 7 8 5.3595 1.6791 -1.4390 8 6 5.8000 2.8889 -0.8191 9 6 5.3648 2.8964 0.6486 10 6 3.8421 2.7471 0.7222 11 1 3.3669 3.6023 0.2419 12 6 3.4052 2.6745 2.1868 13 6 3.6999 3.9879 2.8645 14 8 4.2088 4.8930 2.2378 15 7 3.3979 4.1567 4.1671 16 6 3.6838 5.4337 4.8259 17 6 3.2470 5.3611 6.2904 18 7 3.5335 6.6378 6.9492 19 6 2.5254 7.7009 6.9563 20 6 4.7414 6.8356 7.5633 21 1 5.3084 5.9902 7.9244 22 6 5.2370 8.1224 7.7218 23 7 4.5123 9.1569 7.3518 24 14 6.9326 8.3859 8.4600 25 1 7.5381 7.0710 8.7911 26 1 7.7941 9.0956 7.4806 27 1 6.8132 9.2007 9.6959 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.6881 0.5763 -1.9482 34 1 3.4752 2.3436 -1.9647 35 1 6.8868 2.9519 -0.8762 36 1 5.3588 3.7425 -1.3336 37 1 5.6612 3.8376 1.1117 38 1 5.8380 2.0663 1.1732 39 1 3.9505 1.8758 2.6895 40 1 2.3354 2.4717 2.2372 41 1 2.9905 3.4329 4.6683 42 1 3.1378 6.2320 4.3233 43 1 4.7535 5.6371 4.7750 44 1 3.7927 4.5627 6.7932 45 1 2.1774 5.1578 6.3408 46 1 2.7205 8.3920 6.1364 47 1 1.5348 7.2629 6.8344 48 1 2.5711 8.2386 7.9034 49 1 4.8588 10.0562 7.4621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753057861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:51 Heat of formation + Delta-G solvation = -140.619912 kcal Electronic energy + Delta-G solvation = -26918.718609 eV Core-core repulsion = 23073.422373 eV Total energy + Delta-G solvation = -3845.296236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34151 -40.18946 -38.42493 -37.87198 -35.80031 -35.22759 -33.30582 -32.42547 -31.06586 -30.30162 -28.95866 -27.94812 -25.50241 -24.53995 -24.07116 -23.44934 -22.36918 -21.51164 -20.97792 -18.84735 -18.30601 -17.84618 -17.37854 -17.11903 -16.81872 -16.73161 -16.49044 -16.15756 -15.89123 -15.55430 -15.32907 -15.11791 -14.57221 -14.47941 -14.27487 -14.07400 -13.89118 -13.51958 -13.46758 -13.10521 -13.06324 -12.85605 -12.74642 -12.61429 -12.49030 -12.37376 -12.13692 -12.05994 -12.05533 -11.95790 -11.75409 -11.69121 -11.39518 -10.97177 -10.81854 -10.65720 -10.15824 -9.99845 -8.84851 -7.87552 -5.37342 1.44060 1.46504 1.55906 1.70790 2.21779 2.49214 2.51447 3.02041 3.29479 3.56957 3.60145 3.78257 3.82641 3.95374 4.08407 4.17954 4.23444 4.24135 4.30174 4.34428 4.36437 4.43956 4.52152 4.55492 4.66017 4.69893 4.72669 4.81551 4.83854 4.85396 4.88600 5.04116 5.07501 5.09154 5.13653 5.22431 5.24693 5.34301 5.38118 5.53124 5.62837 5.76138 6.02848 6.31703 6.35651 6.66058 7.13024 7.36372 7.82400 8.25895 9.16414 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002560 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.321705 B =10934.654203 C =12000.206295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.072 3.928 5 H 0.086 0.914 6 C 0.039 3.961 7 O -0.389 6.389 8 C 0.059 3.941 9 C -0.150 4.150 10 C -0.069 4.069 11 H 0.061 0.939 12 C -0.120 4.120 13 C 0.503 3.497 14 O -0.588 6.588 15 N -0.713 5.713 16 C 0.116 3.884 17 C 0.148 3.852 18 N -0.620 5.620 19 C 0.178 3.822 20 C -0.265 4.265 21 H 0.077 0.923 22 C -0.053 4.053 23 N -0.939 5.939 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.296 1.296 27 H -0.289 1.289 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.416 0.584 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.071 0.929 46 H -0.005 1.005 47 H 0.029 0.971 48 H 0.028 0.972 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -23.408 -15.249 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.014 3.986 5 H 0.104 0.896 6 C -0.038 4.038 7 O -0.308 6.308 8 C -0.017 4.017 9 C -0.187 4.187 10 C -0.088 4.088 11 H 0.080 0.920 12 C -0.159 4.159 13 C 0.291 3.709 14 O -0.468 6.468 15 N -0.366 5.366 16 C -0.011 4.011 17 C 0.021 3.979 18 N -0.343 5.343 19 C 0.033 3.967 20 C -0.395 4.395 21 H 0.095 0.905 22 C -0.248 4.248 23 N -0.586 5.586 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.223 1.223 27 H -0.216 1.216 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.253 0.747 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.013 0.987 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.521 -22.572 -15.703 28.046 hybrid contribution 0.712 0.875 0.619 1.286 sum -4.809 -21.698 -15.085 26.860 Atomic orbital electron populations 1.21771 0.93218 1.03268 1.02608 1.22761 0.96066 0.82756 1.01274 1.87941 1.20015 1.28185 1.95059 1.22651 0.81787 0.98042 0.96138 0.89602 1.23114 0.81160 1.03077 0.96412 1.87916 1.21794 1.41666 1.79404 1.22675 1.00903 0.86425 0.91742 1.22313 0.94730 1.03704 0.97982 1.20983 0.95926 0.97303 0.94598 0.92042 1.21654 1.05296 0.93894 0.95071 1.21410 0.77051 0.90634 0.81847 1.90662 1.45234 1.45586 1.65331 1.45947 1.63309 1.16490 1.10820 1.21856 0.98917 0.84823 0.95506 1.21108 0.99544 0.88348 0.88893 1.44130 1.14703 1.13560 1.61922 1.20640 0.87672 0.89363 0.98989 1.19612 0.96488 0.92591 1.30764 0.90506 1.25976 1.01416 0.96036 1.01366 1.70279 1.37366 0.97845 1.53086 0.85176 0.80078 0.78080 0.77003 1.18650 1.22289 1.21554 0.92575 0.89269 0.92355 0.92351 0.91927 0.87096 0.93070 0.87370 0.93443 0.90765 0.90163 0.86318 0.86615 0.74699 0.95192 0.95107 0.91706 0.91029 0.98659 0.95290 0.95332 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.52 6.47 71.98 0.47 0.99 16 3 O -0.39 -6.62 9.38 -148.98 -1.40 -8.02 16 4 C 0.07 1.19 2.21 30.69 0.07 1.26 16 5 H 0.09 1.16 7.79 -2.39 -0.02 1.14 16 6 C 0.04 0.67 6.47 72.02 0.47 1.14 16 7 O -0.39 -7.97 10.77 -148.98 -1.60 -9.57 16 8 C 0.06 1.20 6.84 72.01 0.49 1.69 16 9 C -0.15 -3.29 5.13 30.68 0.16 -3.13 16 10 C -0.07 -1.46 1.64 -10.67 -0.02 -1.48 16 11 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 12 C -0.12 -2.29 5.12 29.85 0.15 -2.14 16 13 C 0.50 14.73 7.57 87.66 0.66 15.39 16 14 O -0.59 -23.05 14.01 -3.03 -0.04 -23.09 16 15 N -0.71 -19.91 5.56 -463.05 -2.57 -22.48 16 16 C 0.12 4.49 6.00 86.38 0.52 5.01 16 17 C 0.15 5.59 5.82 86.38 0.50 6.09 16 18 N -0.62 -30.97 2.93 -726.95 -2.13 -33.10 16 19 C 0.18 8.98 8.99 127.77 1.15 10.13 16 20 C -0.26 -14.47 9.66 84.03 0.81 -13.66 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.05 -3.02 5.38 84.86 0.46 -2.56 16 23 N -0.94 -56.52 10.13 21.65 0.22 -56.30 16 24 Si 0.97 45.55 29.56 68.60 2.03 47.58 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.52 7.96 -2.39 -0.02 0.50 16 32 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 33 H 0.11 1.44 7.96 -2.38 -0.02 1.42 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 2.11 6.07 -2.39 -0.01 2.09 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 1.90 7.65 -2.39 -0.02 1.88 16 41 H 0.42 8.05 8.47 -92.71 -0.79 7.27 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 45 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 46 H 0.00 -0.28 7.43 -2.39 -0.02 -0.30 16 47 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 48 H 0.03 1.55 7.04 -2.39 -0.02 1.53 16 49 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -72.83 388.92 1.25 -71.58 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.13 Total: 15.44 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 6.63 Total: 17.97 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.48 Total: -111.88 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -3.04 Total: -40.69 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.83 1.25 -71.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753057861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.044 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds