Wall clock time and date at job start Tue Mar 31 2020 10:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46858 * 2 1 4 4 C 1.42898 * 113.99773 * 182.11848 * 3 2 1 5 5 H 1.08997 * 109.47593 * 15.71437 * 4 3 2 6 6 C 1.50702 * 109.47257 * 135.71697 * 4 3 2 7 7 O 1.21280 * 120.00147 * 5.97907 * 6 4 3 8 8 N 1.34780 * 120.00191 * 185.97534 * 6 4 3 9 9 C 1.46497 * 119.99850 * 184.33256 * 8 6 4 10 10 C 1.53008 * 109.46535 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.51208 * 304.89786 * 10 9 8 12 12 C 1.53301 * 109.50948 * 184.74713 * 10 9 8 13 13 N 1.47142 * 108.38730 * 187.77433 * 12 10 9 14 14 C 1.36932 * 120.98733 * 230.51600 * 13 12 10 15 15 H 1.08005 * 120.00311 * 149.46035 * 14 13 12 16 16 C 1.38816 * 119.99576 * 329.46579 * 14 13 12 17 17 N 1.31624 * 119.99925 * 166.63216 * 16 14 13 18 18 Si 1.86797 * 120.00039 * 346.62761 * 16 14 13 19 19 H 1.48502 * 109.46753 * 90.38734 * 18 16 14 20 20 H 1.48502 * 109.47324 * 210.38484 * 18 16 14 21 21 H 1.48495 * 109.47323 * 330.38980 * 18 16 14 22 22 C 1.47160 * 118.03368 * 50.53330 * 13 12 10 23 23 C 1.53294 * 108.38628 * 309.46623 * 22 13 12 24 24 O 1.42963 * 109.51190 * 65.00373 * 10 9 8 25 25 C 1.53005 * 109.47019 * 255.71571 * 4 3 2 26 26 C 1.53001 * 109.47101 * 63.96532 * 25 4 3 27 27 C 1.52997 * 109.47246 * 303.96348 * 25 4 3 28 28 H 1.09003 * 109.46931 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47320 * 300.00112 * 1 2 3 30 30 H 1.09002 * 109.47522 * 60.00296 * 1 2 3 31 31 H 1.09004 * 109.46908 * 240.00502 * 2 1 3 32 32 H 1.08995 * 109.47188 * 119.99942 * 2 1 3 33 33 H 0.96998 * 119.99495 * 4.33919 * 8 6 4 34 34 H 1.08998 * 109.47139 * 300.00353 * 9 8 6 35 35 H 1.09003 * 109.47071 * 60.00832 * 9 8 6 36 36 H 1.08999 * 109.68265 * 307.50081 * 12 10 9 37 37 H 1.09000 * 109.67831 * 68.04676 * 12 10 9 38 38 H 0.97000 * 119.99772 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.68005 * 189.74126 * 22 13 12 40 40 H 1.08995 * 109.71097 * 69.21171 * 22 13 12 41 41 H 1.09005 * 109.51239 * 292.38281 * 23 22 13 42 42 H 1.08998 * 109.51580 * 172.22523 * 23 22 13 43 43 H 1.08999 * 109.46941 * 183.96088 * 25 4 3 44 44 H 1.09002 * 109.46885 * 295.16572 * 26 25 4 45 45 H 1.08998 * 109.47251 * 55.16163 * 26 25 4 46 46 H 1.08995 * 109.47092 * 175.16963 * 26 25 4 47 47 H 1.08994 * 109.47465 * 184.52030 * 27 25 4 48 48 H 1.09000 * 109.47362 * 304.52246 * 27 25 4 49 49 H 1.09007 * 109.46915 * 64.51796 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4300 1.4604 -0.0483 5 1 3.8602 0.5066 -0.3535 6 6 3.8158 2.5263 -1.0413 7 8 2.9586 3.2039 -1.5674 8 7 5.1137 2.7267 -1.3447 9 6 5.4964 3.8240 -2.2365 10 6 7.0160 3.8293 -2.4154 11 1 7.4974 3.8774 -1.4387 12 6 7.4289 5.0462 -3.2513 13 7 8.8613 4.9285 -3.5665 14 6 9.7219 5.9680 -3.3349 15 1 10.7547 5.7696 -3.0890 16 6 9.2668 7.2770 -3.4160 17 7 10.0037 8.2603 -2.9444 18 14 7.6087 7.6428 -4.1946 19 1 6.5538 7.6119 -3.1499 20 1 7.6431 8.9875 -4.8238 21 1 7.3111 6.6197 -5.2290 22 6 9.3417 3.6605 -4.1384 23 6 8.8357 2.5111 -3.2593 24 8 7.4216 2.6357 -3.0896 25 6 3.9588 1.8384 1.3369 26 6 3.6533 0.7105 2.3246 27 6 3.2804 3.1263 1.8078 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.7942 2.1442 -0.9725 34 1 5.0172 3.6883 -3.2061 35 1 5.1779 4.7722 -1.8034 36 1 6.8505 5.0705 -4.1749 37 1 7.2519 5.9592 -2.6828 38 1 9.6859 9.1750 -3.0015 39 1 10.4315 3.6558 -4.1573 40 1 8.9565 3.5448 -5.1515 41 1 9.3244 2.5549 -2.2859 42 1 9.0623 1.5589 -3.7388 43 1 5.0364 1.9935 1.2845 44 1 2.5741 0.6127 2.4419 45 1 4.0638 -0.2254 1.9456 46 1 4.1043 0.9408 3.2898 47 1 3.7143 3.4393 2.7574 48 1 3.4306 3.9090 1.0642 49 1 2.2128 2.9483 1.9373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753648318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:16 Heat of formation + Delta-G solvation = -134.154479 kcal Electronic energy + Delta-G solvation = -27747.765158 eV Core-core repulsion = 23902.749284 eV Total energy + Delta-G solvation = -3845.015874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35336 -40.33322 -38.91346 -36.61273 -36.05244 -35.64053 -33.67441 -32.78537 -32.04953 -29.66401 -28.55008 -28.09836 -26.57846 -25.34094 -23.67257 -23.27389 -22.29533 -21.76496 -20.97304 -19.07502 -18.56460 -17.91526 -17.67185 -17.42252 -17.09432 -16.58186 -16.18814 -16.12047 -15.82206 -15.49741 -15.34702 -15.27187 -14.90059 -14.68017 -14.34663 -14.16929 -13.75056 -13.62642 -13.48759 -13.29729 -13.23561 -13.05633 -12.97360 -12.94112 -12.41442 -12.36757 -12.31477 -12.13568 -12.10651 -11.90623 -11.66113 -11.60831 -11.41671 -11.13141 -11.04957 -10.59375 -10.29692 -10.19956 -8.94556 -8.23032 -5.62974 1.23838 1.36234 1.42873 1.52792 1.82570 2.33269 2.64432 2.87164 3.01234 3.17010 3.59979 3.69560 3.85541 3.86688 3.93566 4.07221 4.14191 4.20865 4.26639 4.29896 4.40557 4.41606 4.43091 4.50313 4.53203 4.62543 4.65609 4.66481 4.80521 4.82423 4.87549 4.93529 4.95220 5.00879 5.03328 5.15533 5.16207 5.27124 5.29138 5.36436 5.42388 5.78545 6.06423 6.12620 6.17518 6.52545 6.78843 7.18350 7.49362 7.91795 8.96228 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.003128 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.985983 B = 8947.942775 C = 9246.370737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.378 6.378 4 C 0.083 3.917 5 H 0.116 0.884 6 C 0.504 3.496 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.136 3.864 10 C 0.084 3.916 11 H 0.075 0.925 12 C 0.092 3.908 13 N -0.623 5.623 14 C -0.249 4.249 15 H 0.061 0.939 16 C -0.029 4.029 17 N -0.956 5.956 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.309 1.309 21 H -0.263 1.263 22 C 0.103 3.897 23 C 0.055 3.945 24 O -0.382 6.382 25 C -0.103 4.103 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.417 0.583 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.128 0.872 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 -22.376 9.907 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.297 6.297 4 C 0.022 3.978 5 H 0.134 0.866 6 C 0.291 3.709 7 O -0.452 6.452 8 N -0.360 5.360 9 C 0.011 3.989 10 C 0.024 3.976 11 H 0.093 0.907 12 C -0.033 4.033 13 N -0.349 5.349 14 C -0.378 4.378 15 H 0.079 0.921 16 C -0.225 4.225 17 N -0.601 5.601 18 Si 0.771 3.229 19 H -0.199 1.199 20 H -0.238 1.238 21 H -0.187 1.187 22 C -0.021 4.021 23 C -0.022 4.022 24 O -0.301 6.301 25 C -0.122 4.122 26 C -0.200 4.200 27 C -0.199 4.199 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.146 0.854 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.227 -21.718 9.489 27.642 hybrid contribution 0.191 1.033 -0.519 1.172 sum -14.035 -20.685 8.970 26.558 Atomic orbital electron populations 1.21757 0.93288 1.03357 1.02334 1.22937 0.96282 0.82587 1.01441 1.88028 1.18890 1.28202 1.94576 1.22085 0.83933 0.97643 0.94139 0.86633 1.21325 0.82081 0.85155 0.82312 1.90694 1.50628 1.49775 1.54149 1.45719 1.07871 1.33302 1.49151 1.21174 0.92403 0.90659 0.94664 1.22549 0.93348 0.86002 0.95718 0.90738 1.22000 0.85811 0.97844 0.97679 1.44456 1.03711 1.13426 1.73296 1.18861 0.93499 0.84951 1.40508 0.92140 1.25945 1.01131 0.95557 0.99819 1.69880 1.40481 1.00031 1.49746 0.86043 0.81054 0.76084 0.79689 1.19890 1.23806 1.18724 1.21904 0.99366 0.85218 0.95623 1.23131 0.80339 0.99145 0.99601 1.87839 1.23867 1.39457 1.78968 1.21564 1.00827 0.97107 0.92703 1.21855 1.02252 0.97126 0.98756 1.21705 1.01168 0.96256 1.00723 0.88718 0.92129 0.93459 0.92844 0.90638 0.74596 0.91679 0.90735 0.94713 0.91933 0.92767 0.90705 0.94744 0.92648 0.85435 0.88529 0.92352 0.90809 0.91124 0.91245 0.95488 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.64 6.07 71.98 0.44 1.07 16 3 O -0.38 -8.51 8.47 -130.01 -1.10 -9.61 16 4 C 0.08 1.60 2.37 29.85 0.07 1.67 16 5 H 0.12 1.49 7.64 -2.39 -0.02 1.47 16 6 C 0.50 13.85 6.02 87.66 0.53 14.38 16 7 O -0.57 -21.66 16.52 15.94 0.26 -21.40 16 8 N -0.71 -17.28 5.44 -463.05 -2.52 -19.80 16 9 C 0.14 4.13 5.35 86.38 0.46 4.59 16 10 C 0.08 2.72 2.81 30.70 0.09 2.80 16 11 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 12 C 0.09 3.87 3.63 86.36 0.31 4.19 16 13 N -0.62 -28.59 2.81 -697.54 -1.96 -30.55 16 14 C -0.25 -13.79 10.11 84.04 0.85 -12.94 16 15 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 16 C -0.03 -1.69 5.35 84.86 0.45 -1.24 16 17 N -0.96 -59.46 13.97 21.65 0.30 -59.15 16 18 Si 0.94 46.91 24.24 68.60 1.66 48.57 16 19 H -0.27 -12.83 6.62 99.48 0.66 -12.17 16 20 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 21 H -0.26 -12.69 6.23 99.48 0.62 -12.07 16 22 C 0.10 3.74 6.73 86.35 0.58 4.32 16 23 C 0.06 1.52 6.98 72.08 0.50 2.03 16 24 O -0.38 -11.53 10.33 -148.98 -1.54 -13.07 16 25 C -0.10 -1.59 2.74 -10.79 -0.03 -1.62 16 26 C -0.14 -1.49 8.15 71.98 0.59 -0.90 16 27 C -0.14 -2.87 8.81 71.98 0.63 -2.23 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.08 0.75 6.37 -2.39 -0.02 0.73 16 33 H 0.42 7.63 8.42 -92.71 -0.78 6.85 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.04 1.50 6.58 -2.39 -0.02 1.48 16 37 H 0.06 2.85 4.70 -2.39 -0.01 2.84 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.10 1.25 8.04 -2.39 -0.02 1.24 16 44 H 0.06 0.67 6.85 -2.39 -0.02 0.66 16 45 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.03 0.69 7.20 -2.39 -0.02 0.67 16 49 H 0.05 1.21 7.73 -2.38 -0.02 1.20 16 Total: -1.00 -75.07 380.81 1.34 -73.74 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.01 Total: 16.46 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.22 Total: 14.81 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.17 Total: -109.50 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.38 Total: -44.08 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.66 Total: 48.57 kcal Total: -75.07 1.34 -73.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753648318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.417 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds