Wall clock time and date at job start Tue Mar 31 2020 10:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99847 * 2 1 4 4 C 1.53000 * 109.47242 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47163 * 64.99517 * 4 3 2 6 6 C 1.42900 * 114.00334 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47596 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99999 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00320 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00141 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47222 * 34.99846 * 10 9 7 12 12 C 1.53004 * 109.46752 * 275.00104 * 10 9 7 13 13 C 1.53004 * 109.47137 * 300.00043 * 12 10 9 14 14 C 1.53006 * 109.47123 * 300.00124 * 13 12 10 15 15 C 1.52996 * 109.46976 * 59.99942 * 14 13 12 16 16 C 1.52998 * 109.47251 * 155.00373 * 10 9 7 17 17 H 1.08998 * 109.47395 * 179.97438 * 16 10 9 18 18 C 1.53004 * 109.47023 * 299.99565 * 16 10 9 19 19 N 1.46499 * 109.47198 * 185.00121 * 18 16 10 20 20 C 1.36939 * 119.99933 * 180.27608 * 19 18 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 18 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 18 23 23 N 1.31612 * 120.00054 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99751 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47517 * 89.99708 * 24 22 20 26 26 H 1.48502 * 109.46736 * 209.99481 * 24 22 20 27 27 H 1.48496 * 109.47375 * 329.99177 * 24 22 20 28 28 H 1.08997 * 109.47231 * 300.00144 * 1 2 3 29 29 H 1.09001 * 109.47070 * 59.99768 * 1 2 3 30 30 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47638 * 59.99818 * 3 2 1 32 32 H 1.08999 * 109.47041 * 299.99514 * 3 2 1 33 33 H 1.09008 * 109.47078 * 304.99884 * 4 3 2 34 34 H 1.08992 * 109.47223 * 185.00022 * 4 3 2 35 35 H 1.08997 * 109.47331 * 59.99723 * 6 5 4 36 36 H 1.09006 * 109.47045 * 300.00265 * 6 5 4 37 37 H 0.97003 * 119.99909 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47275 * 59.99923 * 12 10 9 39 39 H 1.09004 * 109.46938 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47262 * 59.99878 * 13 12 10 41 41 H 1.08996 * 109.47118 * 180.02562 * 13 12 10 42 42 H 1.08991 * 109.47327 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.46851 * 300.00006 * 14 13 12 44 44 H 1.09000 * 109.47036 * 180.02562 * 15 14 13 45 45 H 1.09003 * 109.47517 * 59.99976 * 15 14 13 46 46 H 1.09009 * 109.46730 * 64.99908 * 18 16 10 47 47 H 1.08998 * 109.46846 * 305.00453 * 18 16 10 48 48 H 0.97001 * 119.99790 * 359.97438 * 19 18 16 49 49 H 0.96998 * 120.00381 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3811 0.4192 -1.3246 7 6 5.7194 -0.2241 -2.6446 8 8 4.8349 -0.5160 -3.4214 9 7 7.0051 -0.4742 -2.9626 10 6 7.3340 -1.0991 -4.2462 11 1 6.6397 -0.7483 -5.0096 12 6 7.2235 -2.6196 -4.1163 13 6 8.1982 -3.1121 -3.0446 14 6 9.6269 -2.7368 -3.4433 15 6 9.7373 -1.2163 -3.5732 16 6 8.7626 -0.7239 -4.6449 17 1 9.0075 -1.1891 -5.5997 18 6 8.8731 0.7966 -4.7748 19 7 10.2056 1.1488 -5.2716 20 6 10.5397 2.4629 -5.4630 21 1 9.8194 3.2395 -5.2520 22 6 11.8042 2.7969 -5.9281 23 7 12.1252 4.0599 -6.1126 24 14 13.0498 1.4536 -6.2936 25 1 12.9143 1.0245 -7.7088 26 1 14.4213 1.9746 -6.0636 27 1 12.8042 0.2941 -5.3990 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9784 2.1765 0.0889 35 1 5.7351 -0.2133 -0.5105 36 1 5.8628 1.3950 -1.2623 37 1 7.7126 -0.2404 -2.3416 38 1 6.2057 -2.8870 -3.8322 39 1 7.4687 -3.0846 -5.0712 40 1 7.9535 -2.6471 -2.0896 41 1 8.1198 -4.1953 -2.9523 42 1 10.3212 -3.0879 -2.6801 43 1 9.8716 -3.2017 -4.3983 44 1 10.7550 -0.9490 -3.8577 45 1 9.4926 -0.7513 -2.6182 46 1 8.7155 1.2570 -3.7994 47 1 8.1179 1.1574 -5.4731 48 1 10.8526 0.4513 -5.4607 49 1 13.0086 4.2933 -6.4380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754342199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:40 Heat of formation + Delta-G solvation = -126.964889 kcal Electronic energy + Delta-G solvation = -27001.650161 eV Core-core repulsion = 23156.946051 eV Total energy + Delta-G solvation = -3844.704110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35206 -38.84013 -38.10365 -37.01044 -34.84404 -33.65524 -31.98007 -31.07493 -30.13136 -29.93159 -27.48033 -26.44259 -25.37766 -22.89116 -22.81178 -22.17959 -21.16928 -20.59791 -19.01858 -17.82721 -17.38326 -17.14636 -17.08110 -16.04263 -15.86376 -15.49537 -15.27639 -15.09982 -14.80059 -14.43439 -14.18201 -13.98103 -13.83771 -13.47968 -12.99036 -12.88494 -12.79346 -12.61706 -12.40392 -12.20055 -12.08667 -11.78436 -11.70401 -11.57838 -11.36238 -11.10201 -10.99376 -10.80861 -10.47978 -10.26123 -10.02968 -10.00266 -9.94126 -9.91774 -9.68786 -9.58154 -8.95577 -8.86433 -7.23628 -5.77744 -3.13118 2.67824 2.76339 3.34771 3.38122 3.43735 3.46585 3.82460 4.57590 4.60224 4.69076 4.78247 4.80562 4.83135 4.85586 4.95173 4.99060 5.04241 5.06193 5.11622 5.12952 5.18693 5.23968 5.38915 5.41062 5.50015 5.50943 5.54933 5.58517 5.66491 5.73164 5.79284 5.99020 6.08213 6.11401 6.17621 6.26350 6.37545 6.47949 6.54637 6.69926 6.73295 6.79133 6.90109 7.56021 7.98816 8.29661 8.41276 9.20516 9.92749 10.12739 11.40792 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002805 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.334613 B = 9978.998976 C =11220.664987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.042 3.958 7 C 0.515 3.485 8 O -0.521 6.521 9 N -0.716 5.716 10 C 0.158 3.842 11 H 0.090 0.910 12 C -0.129 4.129 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.106 4.106 17 H 0.085 0.915 18 C 0.164 3.836 19 N -0.755 5.755 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.361 0.639 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 -11.966 14.932 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.272 6.272 6 C -0.038 4.038 7 C 0.300 3.700 8 O -0.396 6.396 9 N -0.370 5.370 10 C 0.054 3.946 11 H 0.108 0.892 12 C -0.168 4.168 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.125 4.125 17 H 0.104 0.896 18 C 0.037 3.963 19 N -0.400 5.400 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.194 0.806 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.917 -12.141 14.204 25.206 hybrid contribution 1.390 -0.301 0.255 1.445 sum -15.527 -12.442 14.459 24.596 Atomic orbital electron populations 1.22742 0.81082 1.02861 0.99836 1.87973 1.19595 1.27245 1.95365 1.22545 0.92179 0.85607 1.01010 1.22595 0.93686 0.97735 0.87558 1.88080 1.19507 1.82018 1.37632 1.22223 0.84155 1.01094 0.96320 1.20140 0.82949 0.78931 0.87988 1.90723 1.46876 1.51170 1.50866 1.45986 1.07177 1.63007 1.20875 1.20912 0.96453 0.92017 0.85255 0.89208 1.21917 0.99781 0.95354 0.99732 1.21485 0.94896 1.00124 0.98772 1.21591 0.96365 0.96474 1.01456 1.21563 1.00339 0.94603 0.98534 1.21688 0.93071 0.98098 0.99676 0.89645 1.20625 0.88177 0.90402 0.97104 1.42720 1.11371 1.05175 1.80777 1.19054 0.98287 0.82956 1.36958 0.89318 1.24676 0.97345 0.95745 1.01480 1.69698 1.21124 1.15178 1.52266 0.86546 0.81725 0.81905 0.78297 1.21097 1.21785 1.20353 0.94278 0.93915 0.89604 0.91705 0.92134 0.92259 0.91385 0.90409 0.90080 0.76383 0.91527 0.91028 0.92200 0.92400 0.92215 0.91973 0.90910 0.92270 0.95631 0.95490 0.80641 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.26 10.67 -40.09 -0.43 -4.69 16 3 C 0.06 0.55 6.32 37.16 0.23 0.79 16 4 C 0.06 0.54 6.32 37.16 0.23 0.78 16 5 O -0.35 -4.60 9.84 -59.73 -0.59 -5.19 16 6 C 0.04 0.45 6.42 36.00 0.23 0.68 16 7 C 0.52 7.10 7.87 -10.99 -0.09 7.01 16 8 O -0.52 -9.49 16.16 -14.35 -0.23 -9.72 16 9 N -0.72 -8.62 3.62 -53.81 -0.19 -8.82 16 10 C 0.16 2.07 2.23 -67.93 -0.15 1.92 16 11 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 12 C -0.13 -1.49 5.60 -26.73 -0.15 -1.64 16 13 C -0.12 -1.17 5.77 -26.73 -0.15 -1.32 16 14 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 15 C -0.11 -1.46 4.90 -26.73 -0.13 -1.59 16 16 C -0.11 -1.52 2.02 -90.62 -0.18 -1.70 16 17 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.16 3.06 5.42 -4.04 -0.02 3.04 16 19 N -0.75 -17.44 5.13 -59.90 -0.31 -17.75 16 20 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 24 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.11 6.67 -40.82 -0.27 3.83 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 45 H 0.06 0.71 6.51 -51.93 -0.34 0.37 16 46 H 0.03 0.47 7.61 -51.92 -0.40 0.08 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.36 8.09 4.71 -40.82 -0.19 7.89 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -35.87 388.12 -8.03 -43.90 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.71 Total: 6.92 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 0.52 Total: 0.86 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.27 Total: -55.10 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.25 Total: -19.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.87 -8.03 -43.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754342199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.064 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds