Wall clock time and date at job start Tue Mar 31 2020 10:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00094 * 2 1 4 4 C 1.52995 * 109.47062 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47326 * 65.00150 * 4 3 2 6 6 C 1.42900 * 113.99847 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46704 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 C 1.52997 * 109.47007 * 154.99772 * 10 9 7 17 17 H 1.09002 * 109.47153 * 60.00089 * 16 10 9 18 18 C 1.52992 * 109.47482 * 299.99872 * 16 10 9 19 19 N 1.46505 * 109.47578 * 174.99814 * 18 16 10 20 20 C 1.36935 * 120.00135 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99830 * 0.02562 * 20 19 18 22 22 C 1.38808 * 119.99865 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99962 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00275 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47168 * 89.99461 * 24 22 20 26 26 H 1.48495 * 109.47396 * 209.99943 * 24 22 20 27 27 H 1.48506 * 109.46885 * 329.99892 * 24 22 20 28 28 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47079 * 299.99544 * 1 2 3 30 30 H 1.09000 * 109.47567 * 59.99887 * 1 2 3 31 31 H 1.09004 * 109.46910 * 59.99975 * 3 2 1 32 32 H 1.09005 * 109.47128 * 300.00928 * 3 2 1 33 33 H 1.09003 * 109.47147 * 304.99466 * 4 3 2 34 34 H 1.09001 * 109.46823 * 185.00341 * 4 3 2 35 35 H 1.09002 * 109.47254 * 59.99998 * 6 5 4 36 36 H 1.09002 * 109.47216 * 299.99592 * 6 5 4 37 37 H 0.97004 * 119.99983 * 359.97438 * 9 7 6 38 38 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 39 39 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 40 40 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 42 42 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47360 * 180.02562 * 15 14 13 45 45 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 46 46 H 1.09001 * 109.47359 * 295.00205 * 18 16 10 47 47 H 1.09002 * 109.46906 * 55.00224 * 18 16 10 48 48 H 0.96998 * 119.99536 * 0.02562 * 19 18 16 49 49 H 0.97009 * 119.99843 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3811 0.4191 -1.3245 7 6 5.7194 -0.2241 -2.6447 8 8 4.8347 -0.5167 -3.4211 9 7 7.0049 -0.4752 -2.9622 10 6 7.3338 -1.1010 -4.2453 11 1 6.6398 -0.7501 -5.0091 12 6 7.2224 -2.6213 -4.1146 13 6 7.5652 -3.2749 -5.4549 14 6 8.9940 -2.9007 -5.8541 15 6 9.1055 -1.3803 -5.9847 16 6 8.7627 -0.7267 -4.6439 17 1 9.4567 -1.0775 -3.8801 18 6 8.8742 0.7936 -4.7746 19 7 10.2678 1.1603 -5.0387 20 6 10.6117 2.4765 -5.1945 21 1 9.8557 3.2444 -5.1223 22 6 11.9320 2.8238 -5.4453 23 7 12.2627 4.0890 -5.5946 24 14 13.2396 1.4957 -5.5709 25 1 13.3511 1.0426 -6.9807 26 1 14.5452 2.0423 -5.1219 27 1 12.8617 0.3461 -4.7101 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0890 35 1 5.7350 -0.2135 -0.5104 36 1 5.8628 1.3949 -1.2622 37 1 7.7124 -0.2415 -2.3410 38 1 7.9164 -2.9722 -3.3509 39 1 6.2044 -2.8879 -3.8307 40 1 7.4855 -4.3580 -5.3620 41 1 6.8710 -2.9239 -6.2184 42 1 9.6883 -3.2516 -5.0906 43 1 9.2381 -3.3659 -6.8091 44 1 10.1233 -1.1137 -6.2695 45 1 8.4112 -1.0294 -6.7482 46 1 8.2465 1.1345 -5.5979 47 1 8.5444 1.2630 -3.8478 48 1 10.9467 0.4705 -5.1040 49 1 13.1855 4.3318 -5.7695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754342201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:45 Heat of formation + Delta-G solvation = -129.961205 kcal Electronic energy + Delta-G solvation = -26776.730459 eV Core-core repulsion = 22931.896419 eV Total energy + Delta-G solvation = -3844.834040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.17117 -38.80297 -38.12753 -37.03806 -34.81253 -34.12578 -31.95538 -31.05917 -30.04835 -29.75782 -27.38490 -26.43304 -25.37220 -22.92378 -22.81700 -22.08462 -20.74027 -20.43349 -19.77431 -17.79381 -17.38210 -17.10487 -17.02601 -16.13258 -15.98402 -15.43193 -15.38300 -14.86529 -14.60087 -14.40272 -14.23295 -14.06929 -13.79590 -13.41268 -13.03661 -12.84879 -12.78775 -12.71962 -12.48604 -12.26286 -12.04694 -11.70580 -11.68913 -11.36551 -11.21200 -11.05947 -10.97904 -10.81034 -10.47824 -10.36297 -10.10213 -10.04106 -9.99849 -9.91462 -9.63702 -9.58486 -8.96333 -8.86000 -7.23821 -5.78051 -3.13407 2.66738 2.74772 3.34697 3.37521 3.43309 3.46938 3.80970 4.57212 4.59428 4.68335 4.76098 4.83454 4.86294 4.93846 4.99046 5.00014 5.04711 5.06909 5.13318 5.13734 5.19131 5.27571 5.39238 5.41417 5.48678 5.53410 5.54620 5.56867 5.63623 5.77050 5.83861 6.06078 6.09648 6.16052 6.20369 6.27117 6.44991 6.49050 6.52565 6.65694 6.75813 6.81403 6.90549 7.55253 7.98586 8.28524 8.41002 9.20224 9.92465 10.12551 11.40462 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002847 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.962502 B = 9833.078247 C =11467.770875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.042 3.958 7 C 0.516 3.484 8 O -0.521 6.521 9 N -0.721 5.721 10 C 0.157 3.843 11 H 0.090 0.910 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.104 4.104 17 H 0.074 0.926 18 C 0.163 3.837 19 N -0.755 5.755 20 C -0.242 4.242 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.075 -12.168 11.777 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C -0.038 4.038 7 C 0.301 3.699 8 O -0.396 6.396 9 N -0.374 5.374 10 C 0.053 3.947 11 H 0.108 0.892 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.124 4.124 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.400 5.400 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.236 0.764 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.783 -12.337 11.053 24.302 hybrid contribution 1.445 -0.278 0.490 1.551 sum -16.338 -12.615 11.543 23.649 Atomic orbital electron populations 1.22742 0.81087 1.02858 0.99835 1.87973 1.19592 1.27255 1.95364 1.22548 0.92182 0.85600 1.01010 1.22596 0.93675 0.97755 0.87548 1.88077 1.19522 1.82036 1.37649 1.22227 0.84143 1.01155 0.96256 1.20152 0.82889 0.78895 0.88003 1.90722 1.46839 1.51125 1.50897 1.45969 1.07327 1.63135 1.20921 1.20963 0.96700 0.91969 0.85102 0.89226 1.21903 1.01811 0.94904 0.97927 1.21481 0.97085 0.99753 0.96971 1.21606 0.96590 0.96517 1.01244 1.21525 1.02721 0.93953 0.96503 1.21658 0.94776 0.97562 0.98356 0.90720 1.20646 0.87195 0.90342 0.98270 1.42720 1.03770 1.05343 1.88207 1.19052 0.94218 0.82997 1.40968 0.89316 1.24675 0.96900 0.95734 1.01930 1.69706 1.17843 1.14887 1.55828 0.86554 0.82260 0.81815 0.77925 1.21048 1.21769 1.20375 0.89607 0.94275 0.93918 0.91698 0.92138 0.92243 0.91365 0.90332 0.90004 0.76363 0.91922 0.91604 0.92074 0.91746 0.92095 0.92005 0.90965 0.91529 0.95468 0.95540 0.80650 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.28 10.67 -40.08 -0.43 -4.71 16 3 C 0.06 0.56 6.32 37.16 0.23 0.79 16 4 C 0.06 0.55 6.32 37.16 0.23 0.79 16 5 O -0.35 -4.65 9.84 -59.73 -0.59 -5.24 16 6 C 0.04 0.46 6.42 36.01 0.23 0.69 16 7 C 0.52 7.21 7.87 -10.98 -0.09 7.12 16 8 O -0.52 -9.55 16.16 -14.35 -0.23 -9.79 16 9 N -0.72 -8.85 4.31 -53.81 -0.23 -9.08 16 10 C 0.16 2.09 1.90 -67.93 -0.13 1.97 16 11 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 12 C -0.13 -1.49 5.49 -26.73 -0.15 -1.64 16 13 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 14 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 15 C -0.11 -1.53 5.08 -26.70 -0.14 -1.67 16 16 C -0.10 -1.51 1.80 -90.60 -0.16 -1.67 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 18 C 0.16 3.05 5.56 -4.04 -0.02 3.03 16 19 N -0.75 -17.42 5.13 -59.91 -0.31 -17.73 16 20 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 22 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 24 Si 0.88 21.83 27.74 -169.99 -4.71 17.11 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 4.10 8.40 -40.82 -0.34 3.76 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.03 0.50 7.30 -51.93 -0.38 0.12 16 48 H 0.36 8.08 4.71 -40.82 -0.19 7.89 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -35.94 392.25 -8.14 -44.07 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.88 Total: 7.12 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.56 Total: 0.82 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.24 Total: -55.30 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.25 Total: -19.74 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.94 -8.14 -44.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754342201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.888 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds