Wall clock time and date at job start Tue Mar 31 2020 10:39:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 114.00094 * 2 1
4 4 C 1.52995 * 109.47062 * 180.02562 * 3 2 1
5 5 O 1.42898 * 109.47326 * 65.00150 * 4 3 2
6 6 C 1.42900 * 113.99847 * 180.02562 * 5 4 3
7 7 C 1.50702 * 109.46704 * 180.02562 * 6 5 4
8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5
9 9 N 1.34779 * 119.99614 * 180.02562 * 7 6 5
10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6
11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7
12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7
13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9
14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10
15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12
16 16 C 1.52997 * 109.47007 * 154.99772 * 10 9 7
17 17 H 1.09002 * 109.47153 * 60.00089 * 16 10 9
18 18 C 1.52992 * 109.47482 * 299.99872 * 16 10 9
19 19 N 1.46505 * 109.47578 * 174.99814 * 18 16 10
20 20 C 1.36935 * 120.00135 * 179.97438 * 19 18 16
21 21 H 1.08000 * 119.99830 * 0.02562 * 20 19 18
22 22 C 1.38808 * 119.99865 * 180.02562 * 20 19 18
23 23 N 1.31620 * 119.99962 * 180.02562 * 22 20 19
24 24 Si 1.86800 * 120.00275 * 0.02562 * 22 20 19
25 25 H 1.48497 * 109.47168 * 89.99461 * 24 22 20
26 26 H 1.48495 * 109.47396 * 209.99943 * 24 22 20
27 27 H 1.48506 * 109.46885 * 329.99892 * 24 22 20
28 28 H 1.08997 * 109.47203 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.47079 * 299.99544 * 1 2 3
30 30 H 1.09000 * 109.47567 * 59.99887 * 1 2 3
31 31 H 1.09004 * 109.46910 * 59.99975 * 3 2 1
32 32 H 1.09005 * 109.47128 * 300.00928 * 3 2 1
33 33 H 1.09003 * 109.47147 * 304.99466 * 4 3 2
34 34 H 1.09001 * 109.46823 * 185.00341 * 4 3 2
35 35 H 1.09002 * 109.47254 * 59.99998 * 6 5 4
36 36 H 1.09002 * 109.47216 * 299.99592 * 6 5 4
37 37 H 0.97004 * 119.99983 * 359.97438 * 9 7 6
38 38 H 1.08992 * 109.47399 * 300.00063 * 12 10 9
39 39 H 1.09004 * 109.46724 * 60.00549 * 12 10 9
40 40 H 1.08993 * 109.47662 * 180.02562 * 13 12 10
41 41 H 1.09002 * 109.47075 * 300.00932 * 13 12 10
42 42 H 1.09002 * 109.47153 * 60.00231 * 14 13 12
43 43 H 1.09001 * 109.47289 * 180.02562 * 14 13 12
44 44 H 1.09000 * 109.47360 * 180.02562 * 15 14 13
45 45 H 1.09002 * 109.46935 * 300.00125 * 15 14 13
46 46 H 1.09001 * 109.47359 * 295.00205 * 18 16 10
47 47 H 1.09002 * 109.46906 * 55.00224 * 18 16 10
48 48 H 0.96998 * 119.99536 * 0.02562 * 19 18 16
49 49 H 0.97009 * 119.99843 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1846 -0.0006
5 8 3.9648 0.5796 -1.2220
6 6 5.3811 0.4191 -1.3245
7 6 5.7194 -0.2241 -2.6447
8 8 4.8347 -0.5167 -3.4211
9 7 7.0049 -0.4752 -2.9622
10 6 7.3338 -1.1010 -4.2453
11 1 6.6398 -0.7501 -5.0091
12 6 7.2224 -2.6213 -4.1146
13 6 7.5652 -3.2749 -5.4549
14 6 8.9940 -2.9007 -5.8541
15 6 9.1055 -1.3803 -5.9847
16 6 8.7627 -0.7267 -4.6439
17 1 9.4567 -1.0775 -3.8801
18 6 8.8742 0.7936 -4.7746
19 7 10.2678 1.1603 -5.0387
20 6 10.6117 2.4765 -5.1945
21 1 9.8557 3.2444 -5.1223
22 6 11.9320 2.8238 -5.4453
23 7 12.2627 4.0890 -5.5946
24 14 13.2396 1.4957 -5.5709
25 1 13.3511 1.0426 -6.9807
26 1 14.5452 2.0423 -5.1219
27 1 12.8617 0.3461 -4.7101
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3634 0.5138 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 1.6886 1.8463 0.8900
32 1 1.6885 1.8464 -0.8899
33 1 3.8514 0.5682 0.8410
34 1 3.9785 2.1765 0.0890
35 1 5.7350 -0.2135 -0.5104
36 1 5.8628 1.3949 -1.2622
37 1 7.7124 -0.2415 -2.3410
38 1 7.9164 -2.9722 -3.3509
39 1 6.2044 -2.8879 -3.8307
40 1 7.4855 -4.3580 -5.3620
41 1 6.8710 -2.9239 -6.2184
42 1 9.6883 -3.2516 -5.0906
43 1 9.2381 -3.3659 -6.8091
44 1 10.1233 -1.1137 -6.2695
45 1 8.4112 -1.0294 -6.7482
46 1 8.2465 1.1345 -5.5979
47 1 8.5444 1.2630 -3.8478
48 1 10.9467 0.4705 -5.1040
49 1 13.1855 4.3318 -5.7695
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754342201.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:44
Heat of formation + Delta-G solvation = -155.770993 kcal
Electronic energy + Delta-G solvation = -26777.849655 eV
Core-core repulsion = 22931.896419 eV
Total energy + Delta-G solvation = -3845.953236 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.204 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.26940 -39.73749 -39.04076 -37.90150 -36.56646 -35.22136 -33.83876 -31.83888
-31.60663 -30.73131 -28.31752 -27.14196 -26.86524 -24.44743 -23.53753 -23.32321
-22.10564 -21.52958 -20.82900 -19.74855 -18.24406 -18.10839 -17.82243 -17.10177
-16.84862 -16.59161 -16.29537 -16.13574 -15.99209 -15.53633 -15.38477 -15.27750
-14.84176 -14.73344 -14.62231 -14.28968 -13.73874 -13.69898 -13.64009 -13.34704
-13.07560 -12.92886 -12.77569 -12.67352 -12.35930 -12.18803 -12.12912 -12.02981
-11.93652 -11.83812 -11.51145 -11.35349 -11.17308 -10.98505 -10.75667 -10.71186
-10.61705 -10.01393 -9.29040 -8.02231 -5.36083 1.38211 1.42853 1.50074
1.59918 1.83692 2.49194 2.86608 2.99186 3.29085 3.41604 3.71873
3.78236 3.86830 3.99440 4.08966 4.21072 4.22961 4.24873 4.28580
4.33020 4.43525 4.44816 4.45948 4.47332 4.51990 4.55635 4.56834
4.59266 4.76626 4.84503 4.85036 4.87139 5.03868 5.09792 5.15464
5.23140 5.29021 5.29823 5.39725 5.48613 5.59879 5.75511 6.04359
6.21265 6.25473 6.57302 7.08376 7.25258 7.83364 8.04693 9.19418
Molecular weight = 314.20amu
Principal moments of inertia in cm(-1)
A = 0.014160 B = 0.002847 C = 0.002441
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1976.962502 B = 9833.078247 C =11467.770875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.417 6.417
3 C 0.057 3.943
4 C 0.055 3.945
5 O -0.394 6.394
6 C 0.044 3.956
7 C 0.510 3.490
8 O -0.573 6.573
9 N -0.711 5.711
10 C 0.162 3.838
11 H 0.062 0.938
12 C -0.118 4.118
13 C -0.113 4.113
14 C -0.114 4.114
15 C -0.112 4.112
16 C -0.089 4.089
17 H 0.092 0.908
18 C 0.161 3.839
19 N -0.752 5.752
20 C -0.235 4.235
21 H 0.051 0.949
22 C -0.065 4.065
23 N -0.985 5.985
24 Si 0.957 3.043
25 H -0.279 1.279
26 H -0.296 1.296
27 H -0.245 1.245
28 H 0.091 0.909
29 H 0.059 0.941
30 H 0.041 0.959
31 H 0.095 0.905
32 H 0.050 0.950
33 H 0.071 0.929
34 H 0.092 0.908
35 H 0.111 0.889
36 H 0.103 0.897
37 H 0.415 0.585
38 H 0.081 0.919
39 H 0.053 0.947
40 H 0.081 0.919
41 H 0.054 0.946
42 H 0.074 0.926
43 H 0.073 0.927
44 H 0.058 0.942
45 H 0.055 0.945
46 H 0.007 0.993
47 H 0.030 0.970
48 H 0.368 0.632
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.317 -14.619 13.477 25.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.336 6.336
3 C -0.019 4.019
4 C -0.021 4.021
5 O -0.313 6.313
6 C -0.035 4.035
7 C 0.297 3.703
8 O -0.452 6.452
9 N -0.364 5.364
10 C 0.057 3.943
11 H 0.080 0.920
12 C -0.157 4.157
13 C -0.151 4.151
14 C -0.151 4.151
15 C -0.150 4.150
16 C -0.108 4.108
17 H 0.110 0.890
18 C 0.035 3.965
19 N -0.398 5.398
20 C -0.366 4.366
21 H 0.069 0.931
22 C -0.257 4.257
23 N -0.636 5.636
24 Si 0.783 3.217
25 H -0.206 1.206
26 H -0.223 1.223
27 H -0.169 1.169
28 H 0.109 0.891
29 H 0.078 0.922
30 H 0.060 0.940
31 H 0.113 0.887
32 H 0.068 0.932
33 H 0.089 0.911
34 H 0.109 0.891
35 H 0.128 0.872
36 H 0.121 0.879
37 H 0.252 0.748
38 H 0.099 0.901
39 H 0.072 0.928
40 H 0.100 0.900
41 H 0.073 0.927
42 H 0.092 0.908
43 H 0.092 0.908
44 H 0.077 0.923
45 H 0.074 0.926
46 H 0.025 0.975
47 H 0.048 0.952
48 H 0.202 0.798
49 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -17.038 -14.820 12.788 25.951
hybrid contribution 1.084 0.589 -0.043 1.234
sum -15.954 -14.231 12.745 24.890
Atomic orbital electron populations
1.22898 0.79700 1.03611 1.00811 1.87918 1.21356 1.28775 1.95594
1.22743 0.92220 0.84990 1.01946 1.22863 0.93871 0.98959 0.86432
1.88031 1.20668 1.82808 1.39810 1.22332 0.83722 1.02489 0.94934
1.20837 0.82576 0.78123 0.88773 1.90696 1.48303 1.53449 1.52744
1.45911 1.07437 1.62443 1.20654 1.20832 0.95089 0.93421 0.85007
0.91976 1.21827 1.01599 0.93179 0.99071 1.21482 0.96614 1.00901
0.96069 1.21552 0.97035 0.94078 1.02440 1.21538 1.01495 0.96229
0.95726 1.21514 0.95836 0.94057 0.99377 0.89001 1.20761 0.84574
0.93741 0.97413 1.42645 1.05649 1.03529 1.87997 1.18994 0.93466
0.84429 1.39674 0.93116 1.25551 0.99551 0.98266 1.02304 1.69901
1.18309 1.17617 1.57746 0.85387 0.78284 0.79483 0.78520 1.20552
1.22302 1.16881 0.89089 0.92208 0.93982 0.88671 0.93166 0.91056
0.89056 0.87175 0.87903 0.74837 0.90077 0.92832 0.89993 0.92674
0.90757 0.90807 0.92281 0.92636 0.97487 0.95166 0.79791 0.93341
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 11.01 113.37 1.25 1.62 16
2 O -0.42 -9.15 10.67 -144.34 -1.54 -10.69 16
3 C 0.06 0.95 6.32 71.98 0.45 1.41 16
4 C 0.05 0.90 6.32 71.98 0.45 1.36 16
5 O -0.39 -10.10 9.84 -125.55 -1.24 -11.33 16
6 C 0.04 0.89 6.42 71.24 0.46 1.35 16
7 C 0.51 14.05 7.87 87.66 0.69 14.74 16
8 O -0.57 -21.61 16.16 16.01 0.26 -21.35 16
9 N -0.71 -16.60 4.31 -442.53 -1.91 -18.50 16
10 C 0.16 4.15 1.90 44.99 0.09 4.24 16
11 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16
12 C -0.12 -2.54 5.49 30.60 0.17 -2.37 16
13 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16
14 C -0.11 -2.25 5.92 30.60 0.18 -2.06 16
15 C -0.11 -2.95 5.08 30.61 0.16 -2.79 16
16 C -0.09 -2.41 1.80 -10.78 -0.02 -2.43 16
17 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16
18 C 0.16 5.99 5.56 86.38 0.48 6.47 16
19 N -0.75 -34.07 5.13 -343.45 -1.76 -35.83 16
20 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16
21 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16
22 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16
23 N -0.99 -63.08 13.97 21.65 0.30 -62.78 16
24 Si 0.96 44.40 27.74 68.60 1.90 46.30 16
25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
26 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16
27 H -0.24 -9.93 6.52 99.48 0.65 -9.28 16
28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16
30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16
32 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16
33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16
36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16
37 H 0.41 7.51 8.40 -92.71 -0.78 6.73 16
38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
44 H 0.06 1.72 7.18 -2.39 -0.02 1.71 16
45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16
46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
47 H 0.03 1.11 7.30 -2.39 -0.02 1.09 16
48 H 0.37 15.60 4.71 -92.71 -0.44 15.16 16
49 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16
Total: -1.00 -80.89 392.25 1.55 -79.34
By element:
Atomic # 1 Polarization: 31.49 SS G_CDS: -0.35 Total: 31.14 kcal
Atomic # 6 Polarization: -2.17 SS G_CDS: 5.88 Total: 3.71 kcal
Atomic # 7 Polarization: -113.75 SS G_CDS: -3.37 Total: -117.12 kcal
Atomic # 8 Polarization: -40.86 SS G_CDS: -2.52 Total: -43.38 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal
Total: -80.89 1.55 -79.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754342201.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.434 kcal
(2) G-P(sol) polarization free energy of solvation -80.892 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal
(6) G-S(sol) free energy of system = (1) + (5) -155.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds