Wall clock time and date at job start Tue Mar 31 2020 10:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00094 * 2 1 4 4 C 1.52995 * 109.47062 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47326 * 65.00150 * 4 3 2 6 6 C 1.42900 * 113.99847 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46704 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 C 1.52997 * 109.47007 * 154.99772 * 10 9 7 17 17 H 1.09002 * 109.47153 * 60.00089 * 16 10 9 18 18 C 1.52992 * 109.47482 * 299.99872 * 16 10 9 19 19 N 1.46505 * 109.47578 * 174.99814 * 18 16 10 20 20 C 1.36935 * 120.00135 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99830 * 0.02562 * 20 19 18 22 22 C 1.38808 * 119.99865 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99962 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00275 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47168 * 89.99461 * 24 22 20 26 26 H 1.48495 * 109.47396 * 209.99943 * 24 22 20 27 27 H 1.48506 * 109.46885 * 329.99892 * 24 22 20 28 28 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47079 * 299.99544 * 1 2 3 30 30 H 1.09000 * 109.47567 * 59.99887 * 1 2 3 31 31 H 1.09004 * 109.46910 * 59.99975 * 3 2 1 32 32 H 1.09005 * 109.47128 * 300.00928 * 3 2 1 33 33 H 1.09003 * 109.47147 * 304.99466 * 4 3 2 34 34 H 1.09001 * 109.46823 * 185.00341 * 4 3 2 35 35 H 1.09002 * 109.47254 * 59.99998 * 6 5 4 36 36 H 1.09002 * 109.47216 * 299.99592 * 6 5 4 37 37 H 0.97004 * 119.99983 * 359.97438 * 9 7 6 38 38 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 39 39 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 40 40 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 42 42 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47360 * 180.02562 * 15 14 13 45 45 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 46 46 H 1.09001 * 109.47359 * 295.00205 * 18 16 10 47 47 H 1.09002 * 109.46906 * 55.00224 * 18 16 10 48 48 H 0.96998 * 119.99536 * 0.02562 * 19 18 16 49 49 H 0.97009 * 119.99843 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3811 0.4191 -1.3245 7 6 5.7194 -0.2241 -2.6447 8 8 4.8347 -0.5167 -3.4211 9 7 7.0049 -0.4752 -2.9622 10 6 7.3338 -1.1010 -4.2453 11 1 6.6398 -0.7501 -5.0091 12 6 7.2224 -2.6213 -4.1146 13 6 7.5652 -3.2749 -5.4549 14 6 8.9940 -2.9007 -5.8541 15 6 9.1055 -1.3803 -5.9847 16 6 8.7627 -0.7267 -4.6439 17 1 9.4567 -1.0775 -3.8801 18 6 8.8742 0.7936 -4.7746 19 7 10.2678 1.1603 -5.0387 20 6 10.6117 2.4765 -5.1945 21 1 9.8557 3.2444 -5.1223 22 6 11.9320 2.8238 -5.4453 23 7 12.2627 4.0890 -5.5946 24 14 13.2396 1.4957 -5.5709 25 1 13.3511 1.0426 -6.9807 26 1 14.5452 2.0423 -5.1219 27 1 12.8617 0.3461 -4.7101 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0890 35 1 5.7350 -0.2135 -0.5104 36 1 5.8628 1.3949 -1.2622 37 1 7.7124 -0.2415 -2.3410 38 1 7.9164 -2.9722 -3.3509 39 1 6.2044 -2.8879 -3.8307 40 1 7.4855 -4.3580 -5.3620 41 1 6.8710 -2.9239 -6.2184 42 1 9.6883 -3.2516 -5.0906 43 1 9.2381 -3.3659 -6.8091 44 1 10.1233 -1.1137 -6.2695 45 1 8.4112 -1.0294 -6.7482 46 1 8.2465 1.1345 -5.5979 47 1 8.5444 1.2630 -3.8478 48 1 10.9467 0.4705 -5.1040 49 1 13.1855 4.3318 -5.7695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754342201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:44 Heat of formation + Delta-G solvation = -155.770993 kcal Electronic energy + Delta-G solvation = -26777.849655 eV Core-core repulsion = 22931.896419 eV Total energy + Delta-G solvation = -3845.953236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26940 -39.73749 -39.04076 -37.90150 -36.56646 -35.22136 -33.83876 -31.83888 -31.60663 -30.73131 -28.31752 -27.14196 -26.86524 -24.44743 -23.53753 -23.32321 -22.10564 -21.52958 -20.82900 -19.74855 -18.24406 -18.10839 -17.82243 -17.10177 -16.84862 -16.59161 -16.29537 -16.13574 -15.99209 -15.53633 -15.38477 -15.27750 -14.84176 -14.73344 -14.62231 -14.28968 -13.73874 -13.69898 -13.64009 -13.34704 -13.07560 -12.92886 -12.77569 -12.67352 -12.35930 -12.18803 -12.12912 -12.02981 -11.93652 -11.83812 -11.51145 -11.35349 -11.17308 -10.98505 -10.75667 -10.71186 -10.61705 -10.01393 -9.29040 -8.02231 -5.36083 1.38211 1.42853 1.50074 1.59918 1.83692 2.49194 2.86608 2.99186 3.29085 3.41604 3.71873 3.78236 3.86830 3.99440 4.08966 4.21072 4.22961 4.24873 4.28580 4.33020 4.43525 4.44816 4.45948 4.47332 4.51990 4.55635 4.56834 4.59266 4.76626 4.84503 4.85036 4.87139 5.03868 5.09792 5.15464 5.23140 5.29021 5.29823 5.39725 5.48613 5.59879 5.75511 6.04359 6.21265 6.25473 6.57302 7.08376 7.25258 7.83364 8.04693 9.19418 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002847 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.962502 B = 9833.078247 C =11467.770875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.057 3.943 4 C 0.055 3.945 5 O -0.394 6.394 6 C 0.044 3.956 7 C 0.510 3.490 8 O -0.573 6.573 9 N -0.711 5.711 10 C 0.162 3.838 11 H 0.062 0.938 12 C -0.118 4.118 13 C -0.113 4.113 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.089 4.089 17 H 0.092 0.908 18 C 0.161 3.839 19 N -0.752 5.752 20 C -0.235 4.235 21 H 0.051 0.949 22 C -0.065 4.065 23 N -0.985 5.985 24 Si 0.957 3.043 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.245 1.245 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.415 0.585 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.007 0.993 47 H 0.030 0.970 48 H 0.368 0.632 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.317 -14.619 13.477 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.019 4.019 4 C -0.021 4.021 5 O -0.313 6.313 6 C -0.035 4.035 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.364 5.364 10 C 0.057 3.943 11 H 0.080 0.920 12 C -0.157 4.157 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.108 4.108 17 H 0.110 0.890 18 C 0.035 3.965 19 N -0.398 5.398 20 C -0.366 4.366 21 H 0.069 0.931 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.169 1.169 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.252 0.748 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.048 0.952 48 H 0.202 0.798 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.038 -14.820 12.788 25.951 hybrid contribution 1.084 0.589 -0.043 1.234 sum -15.954 -14.231 12.745 24.890 Atomic orbital electron populations 1.22898 0.79700 1.03611 1.00811 1.87918 1.21356 1.28775 1.95594 1.22743 0.92220 0.84990 1.01946 1.22863 0.93871 0.98959 0.86432 1.88031 1.20668 1.82808 1.39810 1.22332 0.83722 1.02489 0.94934 1.20837 0.82576 0.78123 0.88773 1.90696 1.48303 1.53449 1.52744 1.45911 1.07437 1.62443 1.20654 1.20832 0.95089 0.93421 0.85007 0.91976 1.21827 1.01599 0.93179 0.99071 1.21482 0.96614 1.00901 0.96069 1.21552 0.97035 0.94078 1.02440 1.21538 1.01495 0.96229 0.95726 1.21514 0.95836 0.94057 0.99377 0.89001 1.20761 0.84574 0.93741 0.97413 1.42645 1.05649 1.03529 1.87997 1.18994 0.93466 0.84429 1.39674 0.93116 1.25551 0.99551 0.98266 1.02304 1.69901 1.18309 1.17617 1.57746 0.85387 0.78284 0.79483 0.78520 1.20552 1.22302 1.16881 0.89089 0.92208 0.93982 0.88671 0.93166 0.91056 0.89056 0.87175 0.87903 0.74837 0.90077 0.92832 0.89993 0.92674 0.90757 0.90807 0.92281 0.92636 0.97487 0.95166 0.79791 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.15 10.67 -144.34 -1.54 -10.69 16 3 C 0.06 0.95 6.32 71.98 0.45 1.41 16 4 C 0.05 0.90 6.32 71.98 0.45 1.36 16 5 O -0.39 -10.10 9.84 -125.55 -1.24 -11.33 16 6 C 0.04 0.89 6.42 71.24 0.46 1.35 16 7 C 0.51 14.05 7.87 87.66 0.69 14.74 16 8 O -0.57 -21.61 16.16 16.01 0.26 -21.35 16 9 N -0.71 -16.60 4.31 -442.53 -1.91 -18.50 16 10 C 0.16 4.15 1.90 44.99 0.09 4.24 16 11 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 12 C -0.12 -2.54 5.49 30.60 0.17 -2.37 16 13 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 14 C -0.11 -2.25 5.92 30.60 0.18 -2.06 16 15 C -0.11 -2.95 5.08 30.61 0.16 -2.79 16 16 C -0.09 -2.41 1.80 -10.78 -0.02 -2.43 16 17 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 18 C 0.16 5.99 5.56 86.38 0.48 6.47 16 19 N -0.75 -34.07 5.13 -343.45 -1.76 -35.83 16 20 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 21 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 22 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 23 N -0.99 -63.08 13.97 21.65 0.30 -62.78 16 24 Si 0.96 44.40 27.74 68.60 1.90 46.30 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.24 -9.93 6.52 99.48 0.65 -9.28 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 7.51 8.40 -92.71 -0.78 6.73 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.72 7.18 -2.39 -0.02 1.71 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.03 1.11 7.30 -2.39 -0.02 1.09 16 48 H 0.37 15.60 4.71 -92.71 -0.44 15.16 16 49 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -80.89 392.25 1.55 -79.34 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.35 Total: 31.14 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.88 Total: 3.71 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.37 Total: -117.12 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -2.52 Total: -43.38 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Total: -80.89 1.55 -79.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754342201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.434 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds