Wall clock time and date at job start Tue Mar 31 2020 10:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99852 * 2 1 4 4 C 1.53009 * 109.46831 * 180.02562 * 3 2 1 5 5 O 1.42891 * 109.47345 * 65.00073 * 4 3 2 6 6 C 1.42898 * 114.00225 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47290 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99915 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99928 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99910 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47042 * 324.99678 * 10 9 7 12 12 C 1.52996 * 109.47368 * 84.99762 * 10 9 7 13 13 C 1.53000 * 109.47328 * 59.99845 * 12 10 9 14 14 C 1.52997 * 109.47060 * 60.00126 * 13 12 10 15 15 C 1.53006 * 109.47127 * 300.00449 * 14 13 12 16 16 C 1.52997 * 109.47164 * 59.99836 * 15 14 13 17 17 H 1.09001 * 109.47375 * 59.99966 * 16 15 14 18 18 C 1.52996 * 109.46975 * 180.02562 * 16 15 14 19 19 N 1.46510 * 109.47178 * 294.99744 * 18 16 15 20 20 C 1.36935 * 120.00128 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99678 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00042 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99677 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00312 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47095 * 59.99983 * 24 22 20 26 26 H 1.48495 * 109.47345 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47008 * 300.00194 * 24 22 20 28 28 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46779 * 299.99940 * 1 2 3 30 30 H 1.09004 * 109.46856 * 59.99650 * 1 2 3 31 31 H 1.08999 * 109.47083 * 60.00417 * 3 2 1 32 32 H 1.09001 * 109.47442 * 300.00058 * 3 2 1 33 33 H 1.09005 * 109.46856 * 304.99689 * 4 3 2 34 34 H 1.09000 * 109.46803 * 185.00518 * 4 3 2 35 35 H 1.09008 * 109.46729 * 60.00203 * 6 5 4 36 36 H 1.08994 * 109.47397 * 300.00557 * 6 5 4 37 37 H 0.96999 * 120.00581 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47368 * 300.00056 * 12 10 9 39 39 H 1.09001 * 109.47372 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47398 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.47194 * 300.00476 * 13 12 10 42 42 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 43 43 H 1.08996 * 109.47853 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 45 45 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 46 46 H 1.08998 * 109.47611 * 54.99598 * 18 16 15 47 47 H 1.09001 * 109.47165 * 175.00100 * 18 16 15 48 48 H 0.96999 * 119.99481 * 0.02562 * 19 18 16 49 49 H 0.96999 * 119.99359 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4201 -1.3250 7 6 5.7195 -0.2232 -2.6451 8 8 4.8349 -0.5158 -3.4214 9 7 7.0051 -0.4733 -2.9630 10 6 7.3341 -1.0982 -4.2466 11 1 6.5553 -1.8130 -4.5129 12 6 7.4292 -0.0209 -5.3288 13 6 8.5223 0.9823 -4.9551 14 6 9.8637 0.2556 -4.8396 15 6 9.7685 -0.8218 -3.7574 16 6 8.6755 -1.8250 -4.1312 17 1 8.9202 -2.2900 -5.0862 18 6 8.5799 -2.9020 -3.0487 19 7 9.8232 -3.6765 -3.0192 20 6 9.9697 -4.7026 -2.1243 21 1 9.1689 -4.9406 -1.4399 22 6 11.1474 -5.4367 -2.0968 23 7 12.1236 -5.1462 -2.9306 24 14 11.3476 -6.8359 -0.8756 25 1 10.2947 -7.8557 -1.1142 26 1 12.6859 -7.4558 -1.0480 27 1 11.2214 -6.3082 0.5068 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1765 0.0890 35 1 5.7359 -0.2120 -0.5108 36 1 5.8623 1.3962 -1.2630 37 1 7.7127 -0.2390 -2.3423 38 1 6.4736 0.4969 -5.4111 39 1 7.6735 -0.4859 -6.2839 40 1 8.5898 1.7501 -5.7259 41 1 8.2776 1.4473 -4.0000 42 1 10.1084 -0.2094 -5.7945 43 1 10.6423 0.9701 -4.5729 44 1 9.5238 -0.3569 -2.8023 45 1 10.7240 -1.3399 -3.6754 46 1 8.4232 -2.4296 -2.0789 47 1 7.7437 -3.5655 -3.2691 48 1 10.5426 -3.4624 -3.6337 49 1 12.9467 -5.6590 -2.9111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754342202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:48 Heat of formation + Delta-G solvation = -130.807982 kcal Electronic energy + Delta-G solvation = -26948.969247 eV Core-core repulsion = 23104.098488 eV Total energy + Delta-G solvation = -3844.870759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27657 -38.79622 -38.04562 -36.97940 -34.63121 -33.58168 -31.90867 -31.04588 -29.98500 -29.50804 -27.40776 -26.41156 -25.12842 -22.99162 -22.84109 -22.23945 -21.13972 -20.45856 -18.91558 -17.57602 -17.30791 -17.08434 -16.87154 -16.05712 -15.75949 -15.46170 -15.21795 -15.06662 -14.65786 -14.51174 -14.11968 -13.87845 -13.59571 -13.28008 -13.05282 -12.91585 -12.74323 -12.58202 -12.33118 -12.01884 -11.94175 -11.70217 -11.61471 -11.38709 -11.34611 -10.88234 -10.86663 -10.70331 -10.33864 -10.20966 -9.98569 -9.97008 -9.90801 -9.83819 -9.65729 -9.59110 -8.89595 -8.79970 -6.90215 -5.75549 -3.03667 2.71554 2.80147 3.45096 3.48721 3.49556 3.50584 3.85563 4.58272 4.63656 4.76563 4.85165 4.88540 4.90742 4.92490 4.98418 5.01647 5.05675 5.08162 5.12753 5.18616 5.27625 5.36019 5.40919 5.43819 5.58581 5.62711 5.65962 5.70975 5.77840 5.84981 6.07588 6.17145 6.18445 6.25534 6.29728 6.40099 6.50027 6.61434 6.69869 6.78135 6.83675 6.89521 6.93492 7.61794 7.71328 8.34249 8.43802 9.54936 10.12843 10.47752 11.47291 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.010972 B = 0.003048 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.433319 B = 9184.578799 C =11170.226298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.042 3.958 7 C 0.514 3.486 8 O -0.523 6.523 9 N -0.715 5.715 10 C 0.157 3.843 11 H 0.088 0.912 12 C -0.129 4.129 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.101 4.101 17 H 0.086 0.914 18 C 0.160 3.840 19 N -0.731 5.731 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 18.860 2.967 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.272 6.272 6 C -0.038 4.038 7 C 0.299 3.701 8 O -0.398 6.398 9 N -0.369 5.369 10 C 0.053 3.947 11 H 0.106 0.894 12 C -0.167 4.167 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.121 4.121 17 H 0.104 0.896 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.815 18.290 2.386 24.297 hybrid contribution 0.760 -0.303 1.072 1.349 sum -15.055 17.987 3.458 23.709 Atomic orbital electron populations 1.22747 0.81077 1.02968 0.99721 1.88002 1.19588 1.27068 1.95329 1.22533 0.92198 0.85723 1.00834 1.22594 0.93691 0.97561 0.87772 1.88079 1.19560 1.82055 1.37531 1.22229 0.84049 1.00772 0.96738 1.20130 0.82976 0.79182 0.87809 1.90718 1.46898 1.50994 1.51164 1.45994 1.07099 1.63024 1.20768 1.20949 0.97447 0.94060 0.82292 0.89399 1.21907 0.99025 0.97262 0.98532 1.21485 0.95067 0.97606 1.01088 1.21588 0.96588 0.97893 0.99772 1.21532 1.00040 0.95809 0.97389 1.21629 0.93050 0.96031 1.01354 0.89618 1.20646 0.90383 0.91137 0.94624 1.42362 1.14266 1.37371 1.43527 1.19181 0.99377 1.07171 1.11216 0.91355 1.24721 0.96605 1.00007 0.99657 1.69648 1.06098 1.42952 1.39622 0.86273 0.76794 0.82316 0.80839 1.21279 1.21720 1.21330 0.89511 0.94289 0.93997 0.91768 0.92301 0.92083 0.91615 0.90054 0.90529 0.76391 0.91748 0.91007 0.92524 0.92367 0.91895 0.92300 0.92715 0.90271 0.96439 0.96402 0.78221 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.46 10.67 -40.08 -0.43 -4.88 16 3 C 0.06 0.56 6.32 37.16 0.23 0.79 16 4 C 0.06 0.55 6.32 37.16 0.23 0.78 16 5 O -0.35 -4.66 9.84 -59.73 -0.59 -5.25 16 6 C 0.04 0.46 6.42 36.01 0.23 0.69 16 7 C 0.51 7.31 7.87 -10.99 -0.09 7.23 16 8 O -0.52 -9.73 16.16 -14.35 -0.23 -9.96 16 9 N -0.71 -9.05 3.61 -53.81 -0.19 -9.25 16 10 C 0.16 2.19 2.23 -67.93 -0.15 2.04 16 11 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 12 C -0.13 -1.57 5.60 -26.73 -0.15 -1.72 16 13 C -0.11 -1.24 5.77 -26.73 -0.15 -1.39 16 14 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.11 -1.55 4.90 -26.73 -0.13 -1.68 16 16 C -0.10 -1.56 2.02 -90.62 -0.18 -1.75 16 17 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 18 C 0.16 3.16 5.42 -4.04 -0.02 3.14 16 19 N -0.73 -18.16 5.33 -59.91 -0.32 -18.48 16 20 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 24 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 4.38 6.67 -40.82 -0.27 4.11 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 45 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 46 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -35.07 391.24 -8.39 -43.46 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.76 Total: 7.73 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 0.53 Total: 0.60 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.21 Total: -55.07 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -1.25 Total: -20.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.07 -8.39 -43.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754342202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.352 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds