Wall clock time and date at job start Tue Mar 31 2020 10:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00478 * 2 1 4 4 H 1.09000 * 109.57123 * 330.15740 * 3 2 1 5 5 C 1.53090 * 109.52351 * 90.31034 * 3 2 1 6 6 O 1.42905 * 109.41354 * 177.51597 * 5 3 2 7 7 C 1.42897 * 114.10155 * 298.84559 * 6 5 3 8 8 C 1.53095 * 109.41679 * 61.15639 * 7 6 5 9 9 C 1.53177 * 109.52396 * 209.99939 * 3 2 1 10 10 H 1.08987 * 109.54609 * 303.06689 * 9 3 2 11 11 C 1.53004 * 109.54101 * 63.24607 * 9 3 2 12 12 C 1.50708 * 109.46682 * 184.99962 * 11 9 3 13 13 O 1.21277 * 120.00053 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99288 * 179.97438 * 12 11 9 15 15 C 1.46496 * 120.00652 * 359.97438 * 14 12 11 16 16 C 1.46505 * 119.99278 * 179.97438 * 14 12 11 17 17 C 1.53003 * 109.47060 * 90.00218 * 16 14 12 18 18 C 1.52996 * 109.47301 * 179.97438 * 17 16 14 19 19 N 1.46498 * 109.47059 * 179.97438 * 18 17 16 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 17 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31611 * 120.00081 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47483 * 90.00178 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48502 * 109.47495 * 329.99664 * 24 22 20 28 28 H 1.09008 * 109.47134 * 300.00183 * 1 2 3 29 29 H 1.08995 * 109.47304 * 59.99938 * 1 2 3 30 30 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.48272 * 297.50044 * 5 3 2 32 32 H 1.09003 * 109.48213 * 57.53994 * 5 3 2 33 33 H 1.09003 * 109.48584 * 181.14127 * 7 6 5 34 34 H 1.09004 * 109.48247 * 301.17556 * 7 6 5 35 35 H 1.08996 * 109.52199 * 182.48734 * 8 7 6 36 36 H 1.09002 * 109.51949 * 62.29443 * 8 7 6 37 37 H 1.08999 * 109.47429 * 65.00015 * 11 9 3 38 38 H 1.08993 * 109.47044 * 304.99554 * 11 9 3 39 39 H 1.08993 * 109.47579 * 270.00121 * 15 14 12 40 40 H 1.09001 * 109.46975 * 30.00162 * 15 14 12 41 41 H 1.09003 * 109.47131 * 149.99677 * 15 14 12 42 42 H 1.08990 * 109.47414 * 330.00202 * 16 14 12 43 43 H 1.09002 * 109.47037 * 209.99513 * 16 14 12 44 44 H 1.09004 * 109.47038 * 59.99597 * 17 16 14 45 45 H 1.09000 * 109.46939 * 300.00250 * 17 16 14 46 46 H 1.09004 * 109.47066 * 60.00027 * 18 17 16 47 47 H 1.08994 * 109.46974 * 300.00175 * 18 17 16 48 48 H 0.97001 * 120.00384 * 0.02562 * 19 18 17 49 49 H 0.97008 * 120.00329 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 -0.5111 5 6 2.2255 1.7695 1.4429 6 8 2.8598 3.0501 1.4402 7 6 4.1472 3.0625 0.8202 8 6 4.0091 2.6502 -0.6477 9 6 3.3607 1.2644 -0.7218 10 1 4.0086 0.5311 -0.2419 11 6 3.1465 0.8773 -2.1865 12 6 4.4830 0.7176 -2.8644 13 8 5.5059 0.8953 -2.2376 14 7 4.5413 0.3762 -4.1669 15 6 3.3057 0.1598 -4.9236 16 6 5.8405 0.2215 -4.8260 17 6 6.3126 -1.2275 -4.6890 18 6 7.6691 -1.3892 -5.3778 19 7 8.1213 -2.7764 -5.2460 20 6 9.3159 -3.1620 -5.7934 21 1 9.9267 -2.4424 -6.3184 22 6 9.7418 -4.4778 -5.6735 23 7 10.8901 -4.8483 -6.1992 24 14 8.6850 -5.7225 -4.7662 25 1 7.7536 -6.3723 -5.7230 26 1 9.5561 -6.7530 -4.1462 27 1 7.9051 -5.0318 -3.7078 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.2629 1.8417 1.9490 32 1 2.8582 1.0518 1.9651 33 1 4.5689 4.0659 0.8778 34 1 4.8049 2.3615 1.3343 35 1 4.9952 2.6162 -1.1108 36 1 3.3841 3.3733 -1.1718 37 1 2.5753 1.6579 -2.6889 38 1 2.5987 -0.0636 -2.2373 39 1 3.0133 -0.8876 -4.8501 40 1 2.5142 0.7875 -4.5140 41 1 3.4701 0.4187 -5.9696 42 1 6.5668 0.8859 -4.3581 43 1 5.7445 0.4739 -5.8820 44 1 5.5863 -1.8920 -5.1569 45 1 6.4085 -1.4800 -3.6330 46 1 8.3956 -0.7246 -4.9102 47 1 7.5727 -1.1368 -6.4337 48 1 7.5726 -3.4228 -4.7748 49 1 11.1879 -5.7677 -6.1151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754376694.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:54 Heat of formation + Delta-G solvation = -119.193792 kcal Electronic energy + Delta-G solvation = -26991.253231 eV Core-core repulsion = 23146.886101 eV Total energy + Delta-G solvation = -3844.367130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67548 -39.53857 -37.66638 -36.38771 -34.98003 -34.49626 -32.29784 -30.80725 -30.49859 -29.04197 -27.07638 -27.03424 -25.55374 -23.74801 -23.44864 -22.19581 -21.03905 -20.62306 -19.15488 -17.57195 -17.51256 -17.03453 -16.75313 -16.33269 -16.00348 -15.87739 -15.37273 -15.23553 -14.61951 -14.49919 -14.31275 -14.02716 -13.65140 -13.57964 -13.21761 -13.11362 -12.91776 -12.76124 -12.65070 -12.51736 -12.17591 -12.03422 -11.98898 -11.64365 -11.28277 -11.18338 -11.06066 -10.90134 -10.80167 -10.78932 -10.47665 -10.41878 -10.11072 -9.86128 -9.56699 -9.47728 -8.85968 -8.73386 -7.19435 -5.73577 -3.08736 2.54560 2.88032 3.13221 3.40371 3.44275 3.47782 3.67517 4.15824 4.26484 4.41156 4.57707 4.62674 4.66829 4.76999 4.85137 4.87647 4.91345 4.99200 5.03238 5.09842 5.13264 5.20116 5.24416 5.29558 5.32373 5.35985 5.43228 5.50327 5.53836 5.56354 5.61822 5.67170 5.80325 5.90326 5.94619 5.96215 6.05066 6.28008 6.45998 6.59239 6.77622 6.80409 6.91356 7.27263 8.02932 8.10286 8.45720 9.24900 9.97574 10.17802 11.44954 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.002528 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.358805 B =11072.071434 C =11259.131061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.070 0.930 5 C 0.042 3.958 6 O -0.380 6.380 7 C 0.058 3.942 8 C -0.153 4.153 9 C -0.071 4.071 10 H 0.090 0.910 11 C -0.132 4.132 12 C 0.512 3.488 13 O -0.533 6.533 14 N -0.617 5.617 15 C 0.077 3.923 16 C 0.119 3.881 17 C -0.143 4.143 18 C 0.161 3.839 19 N -0.757 5.757 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.213 17.128 11.255 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.002 3.998 4 H 0.088 0.912 5 C -0.035 4.035 6 O -0.299 6.299 7 C -0.019 4.019 8 C -0.190 4.190 9 C -0.090 4.090 10 H 0.109 0.891 11 C -0.171 4.171 12 C 0.301 3.699 13 O -0.409 6.409 14 N -0.351 5.351 15 C -0.066 4.066 16 C -0.004 4.004 17 C -0.182 4.182 18 C 0.033 3.967 19 N -0.402 5.402 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.418 17.242 11.534 32.808 hybrid contribution -0.900 -1.210 0.321 1.542 sum -26.318 16.031 11.856 33.018 Atomic orbital electron populations 1.22842 0.80922 1.03004 1.00046 1.87954 1.19724 1.26952 1.94963 1.22849 0.95266 0.85110 0.96566 0.91212 1.22997 0.98583 0.85935 0.95992 1.87934 1.32717 1.29870 1.79386 1.22676 0.84498 1.02494 0.92209 1.22404 1.03687 0.95201 0.97749 1.21060 0.95018 0.98761 0.94158 0.89126 1.21695 0.95658 1.04101 0.95691 1.20624 0.91513 0.76307 0.81503 1.90685 1.36557 1.50163 1.63528 1.47935 1.07586 1.69159 1.10373 1.21820 0.86170 1.01579 0.97042 1.21487 0.83961 0.97717 0.97203 1.22104 0.98400 0.95769 1.01916 1.20515 0.91837 0.87329 0.97018 1.42711 1.23423 1.06184 1.67931 1.19081 0.95120 0.95105 1.27987 0.89188 1.24675 0.96987 0.96984 1.00644 1.69702 1.21046 1.17560 1.50035 0.86527 0.80076 0.81890 0.79962 1.21106 1.21667 1.20343 0.94004 0.93868 0.89383 0.88937 0.92107 0.88483 0.92610 0.87985 0.91491 0.89260 0.88119 0.92409 0.91249 0.90764 0.89636 0.90419 0.92105 0.91658 0.95412 0.95560 0.80714 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.28 9.74 -35.23 -0.34 -3.62 16 3 C 0.06 0.49 2.21 -26.59 -0.06 0.43 16 4 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 5 C 0.04 0.35 6.47 37.20 0.24 0.59 16 6 O -0.38 -3.71 10.77 -35.23 -0.38 -4.09 16 7 C 0.06 0.51 6.84 37.21 0.25 0.76 16 8 C -0.15 -1.41 5.13 -26.59 -0.14 -1.54 16 9 C -0.07 -0.68 1.64 -90.43 -0.15 -0.83 16 10 H 0.09 1.08 7.95 -51.94 -0.41 0.66 16 11 C -0.13 -1.16 3.67 -27.88 -0.10 -1.26 16 12 C 0.51 6.27 7.41 -10.98 -0.08 6.19 16 13 O -0.53 -8.44 13.59 5.56 0.08 -8.36 16 14 N -0.62 -6.89 2.87 -181.57 -0.52 -7.41 16 15 C 0.08 0.57 10.29 59.84 0.62 1.18 16 16 C 0.12 1.54 5.45 -4.04 -0.02 1.52 16 17 C -0.14 -2.32 5.65 -26.73 -0.15 -2.47 16 18 C 0.16 3.23 6.26 -4.04 -0.03 3.21 16 19 N -0.76 -19.02 5.41 -59.91 -0.32 -19.34 16 20 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 21 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -30.13 13.97 55.49 0.78 -29.35 16 24 Si 0.89 22.87 27.74 -169.99 -4.71 18.16 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 28 H 0.04 0.19 7.96 -51.92 -0.41 -0.22 16 29 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.63 7.96 -51.93 -0.41 0.22 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 1.14 6.07 -51.93 -0.32 0.82 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.59 7.40 -51.93 -0.38 0.21 16 38 H 0.10 0.86 7.61 -51.93 -0.40 0.46 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.36 6.44 -51.93 -0.33 0.02 16 41 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 42 H 0.09 1.22 7.42 -51.93 -0.39 0.84 16 43 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.36 8.87 5.53 -40.82 -0.23 8.65 16 49 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -35.69 386.43 -7.13 -42.82 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.74 Total: 3.69 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 1.23 Total: 1.70 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.07 Total: -56.11 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.65 Total: -16.08 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.69 -7.13 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754376694.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.374 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds