Wall clock time and date at job start Tue Mar 31 2020 10:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00478 * 2 1 4 4 H 1.09000 * 109.57123 * 330.15740 * 3 2 1 5 5 C 1.53090 * 109.52351 * 90.31034 * 3 2 1 6 6 O 1.42905 * 109.41354 * 177.51597 * 5 3 2 7 7 C 1.42897 * 114.10155 * 298.84559 * 6 5 3 8 8 C 1.53095 * 109.41679 * 61.15639 * 7 6 5 9 9 C 1.53177 * 109.52396 * 209.99939 * 3 2 1 10 10 H 1.08987 * 109.54609 * 303.06689 * 9 3 2 11 11 C 1.53004 * 109.54101 * 63.24607 * 9 3 2 12 12 C 1.50708 * 109.46682 * 184.99962 * 11 9 3 13 13 O 1.21277 * 120.00053 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99288 * 179.97438 * 12 11 9 15 15 C 1.46496 * 120.00652 * 359.97438 * 14 12 11 16 16 C 1.46505 * 119.99278 * 179.97438 * 14 12 11 17 17 C 1.53003 * 109.47060 * 90.00218 * 16 14 12 18 18 C 1.52996 * 109.47301 * 179.97438 * 17 16 14 19 19 N 1.46498 * 109.47059 * 179.97438 * 18 17 16 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 17 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31611 * 120.00081 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47483 * 90.00178 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48502 * 109.47495 * 329.99664 * 24 22 20 28 28 H 1.09008 * 109.47134 * 300.00183 * 1 2 3 29 29 H 1.08995 * 109.47304 * 59.99938 * 1 2 3 30 30 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.48272 * 297.50044 * 5 3 2 32 32 H 1.09003 * 109.48213 * 57.53994 * 5 3 2 33 33 H 1.09003 * 109.48584 * 181.14127 * 7 6 5 34 34 H 1.09004 * 109.48247 * 301.17556 * 7 6 5 35 35 H 1.08996 * 109.52199 * 182.48734 * 8 7 6 36 36 H 1.09002 * 109.51949 * 62.29443 * 8 7 6 37 37 H 1.08999 * 109.47429 * 65.00015 * 11 9 3 38 38 H 1.08993 * 109.47044 * 304.99554 * 11 9 3 39 39 H 1.08993 * 109.47579 * 270.00121 * 15 14 12 40 40 H 1.09001 * 109.46975 * 30.00162 * 15 14 12 41 41 H 1.09003 * 109.47131 * 149.99677 * 15 14 12 42 42 H 1.08990 * 109.47414 * 330.00202 * 16 14 12 43 43 H 1.09002 * 109.47037 * 209.99513 * 16 14 12 44 44 H 1.09004 * 109.47038 * 59.99597 * 17 16 14 45 45 H 1.09000 * 109.46939 * 300.00250 * 17 16 14 46 46 H 1.09004 * 109.47066 * 60.00027 * 18 17 16 47 47 H 1.08994 * 109.46974 * 300.00175 * 18 17 16 48 48 H 0.97001 * 120.00384 * 0.02562 * 19 18 17 49 49 H 0.97008 * 120.00329 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 -0.5111 5 6 2.2255 1.7695 1.4429 6 8 2.8598 3.0501 1.4402 7 6 4.1472 3.0625 0.8202 8 6 4.0091 2.6502 -0.6477 9 6 3.3607 1.2644 -0.7218 10 1 4.0086 0.5311 -0.2419 11 6 3.1465 0.8773 -2.1865 12 6 4.4830 0.7176 -2.8644 13 8 5.5059 0.8953 -2.2376 14 7 4.5413 0.3762 -4.1669 15 6 3.3057 0.1598 -4.9236 16 6 5.8405 0.2215 -4.8260 17 6 6.3126 -1.2275 -4.6890 18 6 7.6691 -1.3892 -5.3778 19 7 8.1213 -2.7764 -5.2460 20 6 9.3159 -3.1620 -5.7934 21 1 9.9267 -2.4424 -6.3184 22 6 9.7418 -4.4778 -5.6735 23 7 10.8901 -4.8483 -6.1992 24 14 8.6850 -5.7225 -4.7662 25 1 7.7536 -6.3723 -5.7230 26 1 9.5561 -6.7530 -4.1462 27 1 7.9051 -5.0318 -3.7078 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.2629 1.8417 1.9490 32 1 2.8582 1.0518 1.9651 33 1 4.5689 4.0659 0.8778 34 1 4.8049 2.3615 1.3343 35 1 4.9952 2.6162 -1.1108 36 1 3.3841 3.3733 -1.1718 37 1 2.5753 1.6579 -2.6889 38 1 2.5987 -0.0636 -2.2373 39 1 3.0133 -0.8876 -4.8501 40 1 2.5142 0.7875 -4.5140 41 1 3.4701 0.4187 -5.9696 42 1 6.5668 0.8859 -4.3581 43 1 5.7445 0.4739 -5.8820 44 1 5.5863 -1.8920 -5.1569 45 1 6.4085 -1.4800 -3.6330 46 1 8.3956 -0.7246 -4.9102 47 1 7.5727 -1.1368 -6.4337 48 1 7.5726 -3.4228 -4.7748 49 1 11.1879 -5.7677 -6.1151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754376694.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:53 Heat of formation + Delta-G solvation = -145.015257 kcal Electronic energy + Delta-G solvation = -26992.372933 eV Core-core repulsion = 23146.886101 eV Total energy + Delta-G solvation = -3845.486833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46574 -40.34013 -38.27457 -37.69324 -36.49845 -35.26826 -34.14529 -32.24274 -31.41410 -29.94344 -27.99407 -27.48218 -26.80155 -24.94135 -24.12145 -23.67301 -22.62896 -21.33072 -20.04167 -19.68032 -18.32073 -17.72300 -17.46665 -17.21393 -16.82828 -16.68519 -16.49505 -16.11868 -15.99573 -15.78422 -15.52503 -15.12395 -14.85938 -14.59749 -14.31662 -14.00560 -13.86208 -13.74905 -13.63961 -13.53124 -13.20644 -13.10887 -12.83927 -12.76484 -12.56230 -12.47169 -12.26467 -12.08326 -12.00103 -11.85601 -11.80260 -11.73755 -11.42665 -11.06688 -11.01491 -10.76221 -10.18003 -9.65620 -9.35326 -8.06986 -5.41244 1.34181 1.37965 1.45406 1.63852 2.03649 2.44642 2.55387 3.04644 3.23950 3.44795 3.56945 3.60462 3.76821 3.86011 3.99433 4.07211 4.16677 4.18660 4.29370 4.30095 4.38163 4.44050 4.45655 4.49606 4.57695 4.59290 4.67779 4.69912 4.72103 4.75997 4.80123 4.84221 4.87693 4.91400 4.99107 5.01074 5.16052 5.22118 5.24524 5.25942 5.56544 5.70805 5.99249 6.17239 6.31436 6.42412 7.02752 7.20888 7.78879 7.97993 9.14512 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.002528 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.358805 B =11072.071434 C =11259.131061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.069 3.931 4 H 0.089 0.911 5 C 0.038 3.962 6 O -0.389 6.389 7 C 0.057 3.943 8 C -0.146 4.146 9 C -0.072 4.072 10 H 0.057 0.943 11 C -0.120 4.120 12 C 0.503 3.497 13 O -0.579 6.579 14 N -0.616 5.616 15 C 0.069 3.931 16 C 0.125 3.875 17 C -0.126 4.126 18 C 0.157 3.843 19 N -0.762 5.762 20 C -0.240 4.240 21 H 0.058 0.942 22 C -0.064 4.064 23 N -0.982 5.982 24 Si 0.958 3.042 25 H -0.271 1.271 26 H -0.292 1.292 27 H -0.260 1.260 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.041 0.959 46 H 0.016 0.984 47 H 0.038 0.962 48 H 0.365 0.635 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.091 17.620 11.266 36.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C 0.011 3.989 4 H 0.107 0.893 5 C -0.039 4.039 6 O -0.308 6.308 7 C -0.020 4.020 8 C -0.184 4.184 9 C -0.092 4.092 10 H 0.075 0.925 11 C -0.160 4.160 12 C 0.293 3.707 13 O -0.459 6.459 14 N -0.349 5.349 15 C -0.072 4.072 16 C 0.001 3.999 17 C -0.165 4.165 18 C 0.031 3.969 19 N -0.408 5.408 20 C -0.371 4.371 21 H 0.076 0.924 22 C -0.256 4.256 23 N -0.633 5.633 24 Si 0.785 3.215 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.185 1.185 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.056 0.944 48 H 0.198 0.802 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -29.365 17.765 11.534 36.206 hybrid contribution 0.337 -1.295 0.286 1.369 sum -29.028 16.469 11.820 35.406 Atomic orbital electron populations 1.23040 0.79271 1.03888 1.01268 1.87933 1.21591 1.27155 1.95062 1.22729 0.94603 0.85463 0.96096 0.89329 1.23109 0.99014 0.85210 0.96548 1.87917 1.32836 1.30569 1.79510 1.22710 0.84291 1.02996 0.91987 1.22298 1.02736 0.95551 0.97788 1.21022 0.95460 0.97908 0.94763 0.92455 1.21678 0.93841 1.05540 0.94898 1.21301 0.92233 0.75456 0.81686 1.90673 1.38370 1.52178 1.64652 1.48031 1.08092 1.68372 1.10360 1.22122 0.84980 1.02510 0.97622 1.21307 0.84888 0.94885 0.98793 1.21920 0.96330 0.98417 0.99802 1.20688 0.93701 0.84535 0.98026 1.42762 1.22156 1.08258 1.67592 1.19074 0.96183 0.94657 1.27183 0.92442 1.25546 0.98557 0.99310 1.02162 1.69882 1.23246 1.18124 1.52012 0.85361 0.78330 0.78763 0.79030 1.19683 1.21898 1.18483 0.93071 0.92336 0.88775 0.87156 0.93357 0.87161 0.93732 0.90259 0.89882 0.86065 0.87275 0.92070 0.88532 0.89270 0.91538 0.87663 0.90798 0.94009 0.96556 0.94392 0.80249 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.13 9.74 -148.98 -1.45 -7.58 16 3 C 0.07 0.99 2.21 30.68 0.07 1.06 16 4 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 5 C 0.04 0.60 6.47 72.01 0.47 1.06 16 6 O -0.39 -7.18 10.77 -148.98 -1.60 -8.78 16 7 C 0.06 0.99 6.84 72.01 0.49 1.48 16 8 C -0.15 -2.61 5.13 30.69 0.16 -2.45 16 9 C -0.07 -1.32 1.64 -10.67 -0.02 -1.34 16 10 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 11 C -0.12 -1.85 3.67 29.85 0.11 -1.74 16 12 C 0.50 11.77 7.41 87.66 0.65 12.42 16 13 O -0.58 -18.79 13.59 -3.02 -0.04 -18.83 16 14 N -0.62 -12.41 2.87 -846.76 -2.43 -14.85 16 15 C 0.07 0.75 10.29 127.77 1.31 2.06 16 16 C 0.12 3.05 5.45 86.38 0.47 3.52 16 17 C -0.13 -3.93 5.65 30.59 0.17 -3.76 16 18 C 0.16 6.27 6.26 86.38 0.54 6.81 16 19 N -0.76 -38.00 5.41 -343.46 -1.86 -39.86 16 20 C -0.24 -14.39 10.47 84.03 0.88 -13.51 16 21 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 22 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 23 N -0.98 -64.62 13.97 21.65 0.30 -64.32 16 24 Si 0.96 47.18 27.74 68.60 1.90 49.09 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.26 -11.90 6.52 99.48 0.65 -11.26 16 28 H 0.05 0.33 7.96 -2.38 -0.02 0.31 16 29 H 0.06 0.31 8.09 -2.39 -0.02 0.29 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 1.29 7.96 -2.39 -0.02 1.27 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.82 6.07 -2.39 -0.01 1.81 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.12 1.09 7.40 -2.39 -0.02 1.08 16 38 H 0.11 1.54 7.61 -2.39 -0.02 1.52 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 0.53 6.44 -2.39 -0.02 0.52 16 41 H 0.09 0.74 7.89 -2.39 -0.02 0.72 16 42 H 0.07 1.90 7.42 -2.39 -0.02 1.88 16 43 H 0.11 2.00 7.89 -2.39 -0.02 1.98 16 44 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.36 17.42 5.53 -92.71 -0.51 16.91 16 49 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 Total: -1.00 -79.64 386.43 2.16 -77.48 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.34 Total: 24.07 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 7.00 Total: 3.57 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -3.99 Total: -119.02 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -3.10 Total: -35.19 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.09 kcal Total: -79.64 2.16 -77.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754376694.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.534 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds