Wall clock time and date at job start Tue Mar 31 2020 10:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99722 * 2 1 4 4 H 1.09002 * 109.57287 * 29.84534 * 3 2 1 5 5 C 1.53093 * 109.52473 * 269.68728 * 3 2 1 6 6 O 1.42908 * 109.41502 * 182.48961 * 5 3 2 7 7 C 1.42896 * 114.09807 * 61.15259 * 6 5 3 8 8 C 1.53083 * 109.42012 * 298.84162 * 7 6 5 9 9 C 1.53181 * 109.52040 * 149.99948 * 3 2 1 10 10 H 1.08999 * 109.61479 * 56.98068 * 9 3 2 11 11 C 1.53000 * 109.54518 * 296.75415 * 9 3 2 12 12 C 1.50696 * 109.47114 * 175.44649 * 11 9 3 13 13 O 1.21281 * 120.00038 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00080 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99944 * 359.97438 * 14 12 11 16 16 C 1.46506 * 120.00349 * 179.97438 * 14 12 11 17 17 C 1.52999 * 109.46691 * 269.99847 * 16 14 12 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.46998 * 179.97438 * 18 17 16 20 20 C 1.36931 * 120.00400 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00553 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99830 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47321 * 59.99707 * 24 22 20 26 26 H 1.48499 * 109.47269 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47092 * 299.99302 * 24 22 20 28 28 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47427 * 299.99700 * 1 2 3 30 30 H 1.08994 * 109.47460 * 59.99980 * 1 2 3 31 31 H 1.08998 * 109.48104 * 62.50357 * 5 3 2 32 32 H 1.09000 * 109.48798 * 302.47207 * 5 3 2 33 33 H 1.09003 * 109.47709 * 178.86100 * 7 6 5 34 34 H 1.09000 * 109.49050 * 58.83831 * 7 6 5 35 35 H 1.08997 * 109.52576 * 297.70478 * 8 7 6 36 36 H 1.09001 * 109.57877 * 177.54710 * 8 7 6 37 37 H 1.09000 * 109.46955 * 55.44595 * 11 9 3 38 38 H 1.09008 * 109.47070 * 295.44527 * 11 9 3 39 39 H 1.09003 * 109.47017 * 270.00245 * 15 14 12 40 40 H 1.08997 * 109.47130 * 30.00435 * 15 14 12 41 41 H 1.08998 * 109.47021 * 150.00489 * 15 14 12 42 42 H 1.08993 * 109.47068 * 149.99266 * 16 14 12 43 43 H 1.09000 * 109.46872 * 29.99477 * 16 14 12 44 44 H 1.08993 * 109.47839 * 59.99891 * 17 16 14 45 45 H 1.09000 * 109.47160 * 299.99453 * 17 16 14 46 46 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 47 47 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 48 48 H 0.97010 * 119.99910 * 359.97438 * 19 18 17 49 49 H 0.97001 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0014 0.5111 5 6 2.2254 1.7697 -1.4429 6 8 2.8596 3.0503 -1.4402 7 6 4.1470 3.0626 -0.8202 8 6 4.0089 2.6505 0.6476 9 6 3.3606 1.2646 0.7219 10 1 4.0098 0.5321 0.2422 11 6 3.1465 0.8774 2.1865 12 6 4.4827 0.7285 2.8672 13 8 5.5056 0.9133 2.2423 14 7 4.5411 0.3890 4.1702 15 6 3.3056 0.1652 4.9249 16 6 5.8402 0.2436 4.8318 17 6 6.3220 -1.2022 4.6972 18 6 7.6790 -1.3538 5.3877 19 7 8.1402 -2.7384 5.2593 20 6 9.3390 -3.1141 5.8041 21 1 9.9447 -2.3896 6.3281 22 6 9.7762 -4.4258 5.6820 23 7 9.0383 -5.3088 5.0431 24 14 11.4113 -4.9385 6.4259 25 1 11.3832 -4.7046 7.8921 26 1 11.6460 -6.3804 6.1595 27 1 12.5044 -4.1380 5.8178 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.2628 1.8418 -1.9490 32 1 2.8580 1.0520 -1.9652 33 1 4.5686 4.0662 -0.8778 34 1 4.8049 2.3620 -1.3342 35 1 3.3840 3.3735 1.1718 36 1 4.9946 2.6168 1.1118 37 1 2.6056 -0.0675 2.2372 38 1 2.5684 1.6544 2.6870 39 1 2.9780 1.1037 5.3721 40 1 2.5320 -0.2070 4.2534 41 1 3.4877 -0.5677 5.7110 42 1 5.7406 0.4968 5.8873 43 1 6.5628 0.9125 4.3644 44 1 6.4216 -1.4554 3.6418 45 1 5.5994 -1.8711 5.1647 46 1 8.4015 -0.6850 4.9198 47 1 7.5798 -1.1006 6.4432 48 1 7.5959 -3.3893 4.7890 49 1 9.3437 -6.2255 4.9581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754376695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:57 Heat of formation + Delta-G solvation = -123.276780 kcal Electronic energy + Delta-G solvation = -26902.931535 eV Core-core repulsion = 23058.387354 eV Total energy + Delta-G solvation = -3844.544181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61083 -39.46786 -37.61540 -36.27220 -34.79264 -34.42837 -32.26726 -30.74247 -30.13691 -28.84839 -26.98670 -26.92803 -25.37938 -23.75542 -23.40564 -22.42563 -20.90884 -20.55370 -19.08281 -17.49732 -17.02475 -16.97785 -16.69186 -16.26968 -15.95212 -15.82492 -15.31354 -15.17027 -14.56978 -14.44768 -14.30546 -13.89187 -13.59970 -13.23827 -13.17240 -13.09247 -13.01473 -12.74846 -12.54804 -12.44494 -12.03612 -11.89921 -11.82058 -11.56800 -11.23921 -11.02954 -10.88282 -10.80779 -10.72958 -10.71113 -10.37156 -10.35908 -10.08174 -9.79569 -9.67511 -9.41368 -8.82380 -8.63806 -6.87466 -5.71718 -3.00448 2.62696 2.96281 3.18471 3.47365 3.51078 3.52666 3.72288 4.22412 4.32294 4.46893 4.62059 4.64070 4.73421 4.85134 4.91750 4.95426 4.96793 5.05106 5.09496 5.18481 5.19922 5.28569 5.29848 5.37529 5.40836 5.46102 5.48062 5.54935 5.60664 5.63628 5.72682 5.73323 5.93927 5.97541 6.02278 6.12781 6.33959 6.42884 6.56495 6.64301 6.90329 6.92874 6.96225 7.36173 7.73375 8.18472 8.47292 9.57854 10.16772 10.51414 11.51370 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002299 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.876475 B =12177.852811 C =12254.029150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.070 0.930 5 C 0.042 3.958 6 O -0.381 6.381 7 C 0.058 3.942 8 C -0.153 4.153 9 C -0.071 4.071 10 H 0.091 0.909 11 C -0.131 4.131 12 C 0.512 3.488 13 O -0.533 6.533 14 N -0.616 5.616 15 C 0.077 3.923 16 C 0.119 3.881 17 C -0.138 4.138 18 C 0.157 3.843 19 N -0.734 5.734 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.894 17.731 -8.662 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.002 3.998 4 H 0.088 0.912 5 C -0.035 4.035 6 O -0.299 6.299 7 C -0.019 4.019 8 C -0.191 4.191 9 C -0.090 4.090 10 H 0.109 0.891 11 C -0.171 4.171 12 C 0.300 3.700 13 O -0.410 6.410 14 N -0.350 5.350 15 C -0.067 4.067 16 C -0.004 4.004 17 C -0.177 4.177 18 C 0.029 3.971 19 N -0.378 5.378 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.164 17.829 -8.975 29.092 hybrid contribution 0.461 -0.757 0.537 1.037 sum -20.703 17.072 -8.438 28.129 Atomic orbital electron populations 1.22840 0.80949 1.03014 1.00015 1.87961 1.19702 1.26930 1.94958 1.22849 0.95283 0.85110 0.96538 0.91231 1.22998 0.98566 0.85924 0.96020 1.87930 1.32729 1.29895 1.79391 1.22670 0.84494 1.02452 0.92247 1.22407 1.03742 0.95227 0.97694 1.21058 0.94988 0.98744 0.94193 0.89097 1.21687 0.95690 1.04069 0.95678 1.20617 0.91480 0.76331 0.81529 1.90679 1.36565 1.50087 1.63678 1.47933 1.07596 1.69122 1.10321 1.21814 0.86311 1.01394 0.97159 1.21484 0.83857 0.98047 0.97003 1.22049 0.98344 0.95313 1.02033 1.20539 0.91803 0.88447 0.96354 1.42352 1.22750 1.05298 1.67360 1.19204 0.96010 0.93912 1.27893 0.91215 1.24757 0.98891 0.96198 1.01318 1.69660 1.38323 1.03237 1.47150 0.86241 0.83675 0.77338 0.78784 1.21285 1.21682 1.21246 0.89364 0.93882 0.94034 0.88959 0.92085 0.88536 0.92601 0.91546 0.87934 0.88068 0.89342 0.92687 0.91109 0.90592 0.90633 0.89796 0.91591 0.92078 0.96243 0.96470 0.78321 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.45 9.75 -35.23 -0.34 -3.79 16 3 C 0.06 0.52 2.21 -26.59 -0.06 0.46 16 4 H 0.07 0.53 7.79 -51.93 -0.40 0.12 16 5 C 0.04 0.37 6.47 37.21 0.24 0.61 16 6 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 7 C 0.06 0.53 6.84 37.20 0.25 0.79 16 8 C -0.15 -1.48 5.12 -26.59 -0.14 -1.62 16 9 C -0.07 -0.71 1.64 -90.43 -0.15 -0.86 16 10 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 11 C -0.13 -1.24 3.67 -27.88 -0.10 -1.34 16 12 C 0.51 6.63 7.41 -10.99 -0.08 6.55 16 13 O -0.53 -8.82 13.56 5.56 0.08 -8.74 16 14 N -0.62 -7.37 2.87 -181.57 -0.52 -7.89 16 15 C 0.08 0.62 10.24 59.85 0.61 1.23 16 16 C 0.12 1.64 5.41 -4.04 -0.02 1.62 16 17 C -0.14 -2.41 5.65 -26.73 -0.15 -2.56 16 18 C 0.16 3.32 6.26 -4.04 -0.03 3.30 16 19 N -0.73 -19.71 5.60 -59.91 -0.34 -20.04 16 20 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 24 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 30 H 0.04 0.21 7.96 -51.93 -0.41 -0.21 16 31 H 0.09 0.66 7.96 -51.93 -0.41 0.25 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.20 6.03 -51.93 -0.31 0.88 16 37 H 0.10 0.92 6.92 -51.93 -0.36 0.56 16 38 H 0.09 0.64 8.11 -51.92 -0.42 0.22 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 41 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 42 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.08 1.27 7.42 -51.93 -0.39 0.88 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 10.82 7.67 -40.82 -0.31 10.51 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -34.96 389.77 -7.50 -42.46 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.80 Total: 5.17 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 1.23 Total: 1.73 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.13 Total: -56.45 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.65 Total: -16.77 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.96 -7.50 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754376695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.817 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds