Wall clock time and date at job start Tue Mar 31 2020 10:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99722 * 2 1 4 4 H 1.09002 * 109.57287 * 29.84534 * 3 2 1 5 5 C 1.53093 * 109.52473 * 269.68728 * 3 2 1 6 6 O 1.42908 * 109.41502 * 182.48961 * 5 3 2 7 7 C 1.42896 * 114.09807 * 61.15259 * 6 5 3 8 8 C 1.53083 * 109.42012 * 298.84162 * 7 6 5 9 9 C 1.53181 * 109.52040 * 149.99948 * 3 2 1 10 10 H 1.08999 * 109.61479 * 56.98068 * 9 3 2 11 11 C 1.53000 * 109.54518 * 296.75415 * 9 3 2 12 12 C 1.50696 * 109.47114 * 175.44649 * 11 9 3 13 13 O 1.21281 * 120.00038 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00080 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99944 * 359.97438 * 14 12 11 16 16 C 1.46506 * 120.00349 * 179.97438 * 14 12 11 17 17 C 1.52999 * 109.46691 * 269.99847 * 16 14 12 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.46998 * 179.97438 * 18 17 16 20 20 C 1.36931 * 120.00400 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00553 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99830 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47321 * 59.99707 * 24 22 20 26 26 H 1.48499 * 109.47269 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47092 * 299.99302 * 24 22 20 28 28 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47427 * 299.99700 * 1 2 3 30 30 H 1.08994 * 109.47460 * 59.99980 * 1 2 3 31 31 H 1.08998 * 109.48104 * 62.50357 * 5 3 2 32 32 H 1.09000 * 109.48798 * 302.47207 * 5 3 2 33 33 H 1.09003 * 109.47709 * 178.86100 * 7 6 5 34 34 H 1.09000 * 109.49050 * 58.83831 * 7 6 5 35 35 H 1.08997 * 109.52576 * 297.70478 * 8 7 6 36 36 H 1.09001 * 109.57877 * 177.54710 * 8 7 6 37 37 H 1.09000 * 109.46955 * 55.44595 * 11 9 3 38 38 H 1.09008 * 109.47070 * 295.44527 * 11 9 3 39 39 H 1.09003 * 109.47017 * 270.00245 * 15 14 12 40 40 H 1.08997 * 109.47130 * 30.00435 * 15 14 12 41 41 H 1.08998 * 109.47021 * 150.00489 * 15 14 12 42 42 H 1.08993 * 109.47068 * 149.99266 * 16 14 12 43 43 H 1.09000 * 109.46872 * 29.99477 * 16 14 12 44 44 H 1.08993 * 109.47839 * 59.99891 * 17 16 14 45 45 H 1.09000 * 109.47160 * 299.99453 * 17 16 14 46 46 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 47 47 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 48 48 H 0.97010 * 119.99910 * 359.97438 * 19 18 17 49 49 H 0.97001 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0014 0.5111 5 6 2.2254 1.7697 -1.4429 6 8 2.8596 3.0503 -1.4402 7 6 4.1470 3.0626 -0.8202 8 6 4.0089 2.6505 0.6476 9 6 3.3606 1.2646 0.7219 10 1 4.0098 0.5321 0.2422 11 6 3.1465 0.8774 2.1865 12 6 4.4827 0.7285 2.8672 13 8 5.5056 0.9133 2.2423 14 7 4.5411 0.3890 4.1702 15 6 3.3056 0.1652 4.9249 16 6 5.8402 0.2436 4.8318 17 6 6.3220 -1.2022 4.6972 18 6 7.6790 -1.3538 5.3877 19 7 8.1402 -2.7384 5.2593 20 6 9.3390 -3.1141 5.8041 21 1 9.9447 -2.3896 6.3281 22 6 9.7762 -4.4258 5.6820 23 7 9.0383 -5.3088 5.0431 24 14 11.4113 -4.9385 6.4259 25 1 11.3832 -4.7046 7.8921 26 1 11.6460 -6.3804 6.1595 27 1 12.5044 -4.1380 5.8178 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.2628 1.8418 -1.9490 32 1 2.8580 1.0520 -1.9652 33 1 4.5686 4.0662 -0.8778 34 1 4.8049 2.3620 -1.3342 35 1 3.3840 3.3735 1.1718 36 1 4.9946 2.6168 1.1118 37 1 2.6056 -0.0675 2.2372 38 1 2.5684 1.6544 2.6870 39 1 2.9780 1.1037 5.3721 40 1 2.5320 -0.2070 4.2534 41 1 3.4877 -0.5677 5.7110 42 1 5.7406 0.4968 5.8873 43 1 6.5628 0.9125 4.3644 44 1 6.4216 -1.4554 3.6418 45 1 5.5994 -1.8711 5.1647 46 1 8.4015 -0.6850 4.9198 47 1 7.5798 -1.1006 6.4432 48 1 7.5959 -3.3893 4.7890 49 1 9.3437 -6.2255 4.9581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754376695.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:56 Heat of formation + Delta-G solvation = -148.031247 kcal Electronic energy + Delta-G solvation = -26904.004969 eV Core-core repulsion = 23058.387354 eV Total energy + Delta-G solvation = -3845.617616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46019 -40.33175 -38.26899 -37.59728 -36.41243 -35.25849 -34.06719 -31.83933 -31.38917 -29.85603 -27.91345 -27.47655 -26.76940 -25.13141 -24.12124 -23.81875 -22.49027 -21.31895 -20.04000 -19.17330 -18.31073 -17.72845 -17.46057 -17.21252 -16.84925 -16.66425 -16.50345 -16.08258 -15.99031 -15.68900 -15.36172 -15.17252 -14.94298 -14.57424 -14.25695 -13.97018 -13.81811 -13.61405 -13.48218 -13.36290 -13.19396 -13.06620 -12.76502 -12.73742 -12.53443 -12.43897 -12.25606 -12.10358 -12.01758 -11.83846 -11.80986 -11.74106 -11.41079 -11.06171 -10.95984 -10.75156 -10.17117 -9.63907 -9.05500 -7.98140 -5.28664 1.45089 1.49598 1.55672 1.64562 2.04545 2.54458 2.56111 3.05204 3.34983 3.46354 3.58433 3.77507 3.84000 3.87309 4.00799 4.08064 4.17465 4.23615 4.29318 4.36510 4.38001 4.44905 4.49937 4.52410 4.58736 4.60233 4.70095 4.70619 4.73003 4.74256 4.80470 4.83914 4.89108 4.91947 4.98093 5.02703 5.17090 5.23080 5.27853 5.28622 5.45304 5.57188 5.99748 6.23663 6.32104 6.43324 7.21478 7.28960 8.03979 8.27668 9.25636 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002299 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.876475 B =12177.852811 C =12254.029150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.399 6.399 3 C 0.069 3.931 4 H 0.089 0.911 5 C 0.039 3.961 6 O -0.389 6.389 7 C 0.057 3.943 8 C -0.146 4.146 9 C -0.073 4.073 10 H 0.056 0.944 11 C -0.120 4.120 12 C 0.503 3.497 13 O -0.579 6.579 14 N -0.617 5.617 15 C 0.069 3.931 16 C 0.127 3.873 17 C -0.121 4.121 18 C 0.155 3.845 19 N -0.750 5.750 20 C -0.251 4.251 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.980 3.020 25 H -0.273 1.273 26 H -0.293 1.293 27 H -0.278 1.278 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.013 0.987 47 H 0.034 0.966 48 H 0.372 0.628 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.665 19.084 -7.372 31.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.318 6.318 3 C 0.011 3.989 4 H 0.107 0.893 5 C -0.039 4.039 6 O -0.308 6.308 7 C -0.019 4.019 8 C -0.184 4.184 9 C -0.092 4.092 10 H 0.074 0.926 11 C -0.159 4.159 12 C 0.293 3.707 13 O -0.459 6.459 14 N -0.349 5.349 15 C -0.072 4.072 16 C 0.004 3.996 17 C -0.160 4.160 18 C 0.028 3.972 19 N -0.393 5.393 20 C -0.383 4.383 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.808 3.192 25 H -0.199 1.199 26 H -0.219 1.219 27 H -0.204 1.204 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.031 0.969 47 H 0.052 0.948 48 H 0.203 0.797 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.976 19.223 -7.655 30.919 hybrid contribution 0.965 -1.157 0.118 1.511 sum -22.011 18.066 -7.537 29.456 Atomic orbital electron populations 1.23042 0.79251 1.03894 1.01290 1.87941 1.21628 1.27180 1.95068 1.22732 0.94558 0.85456 0.96133 0.89285 1.23108 0.99040 0.85211 0.96496 1.87914 1.32828 1.30546 1.79493 1.22703 0.84299 1.03005 0.91935 1.22299 1.02763 0.95498 0.97829 1.21024 0.95497 0.97942 0.94706 0.92569 1.21671 0.93800 1.05482 0.94955 1.21315 0.92261 0.75481 0.81678 1.90667 1.38387 1.52113 1.64765 1.48041 1.08109 1.68390 1.10363 1.22110 0.84832 1.03004 0.97290 1.21275 0.84834 0.94830 0.98688 1.21855 0.96559 0.98117 0.99456 1.20704 0.93443 0.85506 0.97512 1.42616 1.22299 1.07204 1.67142 1.19652 0.96856 0.94320 1.27458 0.90443 1.25682 1.02799 0.96309 1.02292 1.69833 1.40267 1.03353 1.48833 0.85120 0.79125 0.76538 0.78426 1.19878 1.21939 1.20423 0.88797 0.92332 0.92999 0.87081 0.93378 0.87088 0.93761 0.89883 0.90246 0.87304 0.86107 0.90069 0.89370 0.90422 0.87730 0.91452 0.94657 0.91591 0.96867 0.94818 0.79701 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.40 -6.72 9.75 -148.98 -1.45 -8.18 16 3 C 0.07 1.09 2.21 30.69 0.07 1.15 16 4 H 0.09 1.06 7.79 -2.39 -0.02 1.04 16 5 C 0.04 0.64 6.47 72.01 0.47 1.11 16 6 O -0.39 -7.52 10.77 -148.98 -1.60 -9.13 16 7 C 0.06 1.05 6.84 72.01 0.49 1.55 16 8 C -0.15 -2.80 5.12 30.68 0.16 -2.64 16 9 C -0.07 -1.44 1.64 -10.67 -0.02 -1.46 16 10 H 0.06 1.49 7.96 -2.39 -0.02 1.48 16 11 C -0.12 -2.06 3.67 29.85 0.11 -1.95 16 12 C 0.50 12.82 7.41 87.66 0.65 13.47 16 13 O -0.58 -19.99 13.56 -3.03 -0.04 -20.03 16 14 N -0.62 -13.85 2.87 -846.76 -2.43 -16.28 16 15 C 0.07 0.90 10.24 127.77 1.31 2.21 16 16 C 0.13 3.41 5.41 86.38 0.47 3.88 16 17 C -0.12 -4.23 5.65 30.60 0.17 -4.06 16 18 C 0.16 6.60 6.26 86.38 0.54 7.14 16 19 N -0.75 -40.95 5.60 -343.45 -1.92 -42.88 16 20 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 24 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.38 8.09 -2.39 -0.02 0.36 16 30 H 0.05 0.38 7.96 -2.39 -0.02 0.37 16 31 H 0.11 1.40 7.96 -2.39 -0.02 1.38 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.93 6.03 -2.39 -0.01 1.92 16 37 H 0.11 1.75 6.92 -2.39 -0.02 1.73 16 38 H 0.12 1.31 8.11 -2.38 -0.02 1.29 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.86 6.44 -2.39 -0.02 0.84 16 41 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 42 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 43 H 0.07 2.05 7.42 -2.39 -0.02 2.03 16 44 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.37 21.62 7.67 -92.70 -0.71 20.91 16 49 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.39 389.77 2.01 -75.38 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.21 Total: 29.57 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.95 Total: 3.67 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.07 Total: -120.74 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -3.10 Total: -37.33 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.39 2.01 -75.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754376695.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.649 kcal (2) G-P(sol) polarization free energy of solvation -77.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds