Wall clock time and date at job start Tue Mar 31 2020 10:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42910 * 113.99888 * 2 1 4 4 H 1.08994 * 109.57281 * 330.15485 * 3 2 1 5 5 C 1.53088 * 109.52182 * 90.30985 * 3 2 1 6 6 O 1.42912 * 109.41314 * 62.29895 * 5 3 2 7 7 C 1.42901 * 114.09950 * 61.15394 * 6 5 3 8 8 C 1.53090 * 109.41769 * 298.84444 * 7 6 5 9 9 C 1.53171 * 109.51916 * 209.99839 * 3 2 1 10 10 H 1.09001 * 109.54178 * 177.11965 * 9 3 2 11 11 C 1.52996 * 109.54638 * 56.93992 * 9 3 2 12 12 C 1.50702 * 109.47159 * 174.99697 * 11 9 3 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 9 15 15 C 1.46506 * 120.00264 * 0.28128 * 14 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 17 17 C 1.53002 * 109.47088 * 89.99979 * 16 14 12 18 18 C 1.52995 * 109.47427 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.47393 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99889 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00380 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99703 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00062 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00154 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.46957 * 90.00074 * 24 22 20 26 26 H 1.48505 * 109.47109 * 210.00223 * 24 22 20 27 27 H 1.48502 * 109.46820 * 330.00060 * 24 22 20 28 28 H 1.09007 * 109.47294 * 60.00045 * 1 2 3 29 29 H 1.08994 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47697 * 300.00236 * 1 2 3 31 31 H 1.09000 * 109.47719 * 182.27678 * 5 3 2 32 32 H 1.09000 * 109.48311 * 302.31539 * 5 3 2 33 33 H 1.09009 * 109.47964 * 58.82445 * 7 6 5 34 34 H 1.08994 * 109.48224 * 178.85607 * 7 6 5 35 35 H 1.09007 * 109.51899 * 297.70384 * 8 7 6 36 36 H 1.08995 * 109.52194 * 177.51370 * 8 7 6 37 37 H 1.09004 * 109.47066 * 54.99900 * 11 9 3 38 38 H 1.08994 * 109.47405 * 294.99731 * 11 9 3 39 39 H 1.08998 * 109.46921 * 89.99095 * 15 14 12 40 40 H 1.08994 * 109.46996 * 209.99677 * 15 14 12 41 41 H 1.09001 * 109.46578 * 329.99540 * 15 14 12 42 42 H 1.09001 * 109.47567 * 210.00057 * 16 14 12 43 43 H 1.09005 * 109.47076 * 330.00563 * 16 14 12 44 44 H 1.08999 * 109.47707 * 300.00330 * 17 16 14 45 45 H 1.09005 * 109.46685 * 60.00344 * 17 16 14 46 46 H 1.09006 * 109.47343 * 300.00688 * 18 17 16 47 47 H 1.09005 * 109.46868 * 60.00504 * 18 17 16 48 48 H 0.96998 * 119.99783 * 0.02562 * 19 18 17 49 49 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 2.0014 -0.5111 5 6 2.2254 1.7697 1.4429 6 8 3.1432 0.8884 2.0935 7 6 4.4379 0.8453 1.4902 8 6 4.3116 0.3440 0.0493 9 6 3.3605 1.2646 -0.7218 10 1 3.7805 2.2694 -0.7669 11 6 3.1663 0.7268 -2.1409 12 6 4.4719 0.8021 -2.8897 13 8 5.4606 1.2420 -2.3422 14 7 4.5424 0.3748 -4.1660 15 6 3.3482 -0.1571 -4.8275 16 6 5.8130 0.4423 -4.8921 17 6 6.5898 -0.8591 -4.6828 18 6 7.9165 -0.7889 -5.4415 19 7 8.6600 -2.0353 -5.2416 20 6 9.8856 -2.2031 -5.8288 21 1 10.3040 -1.4168 -6.4396 22 6 10.5898 -3.3843 -5.6398 23 7 11.7677 -3.5458 -6.2046 24 14 9.8659 -4.7446 -4.5839 25 1 9.0568 -5.6540 -5.4346 26 1 10.9643 -5.5122 -3.9440 27 1 9.0011 -4.1490 -3.5339 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.6311 2.7814 1.4425 32 1 1.2735 1.7598 1.9738 33 1 4.8726 1.8450 1.4905 34 1 5.0799 0.1695 2.0553 35 1 3.9147 -0.6712 0.0503 36 1 5.2922 0.3523 -0.4265 37 1 2.4163 1.3262 -2.6571 38 1 2.8335 -0.3100 -2.0942 39 1 2.8139 0.6549 -5.3205 40 1 3.6437 -0.9002 -5.5681 41 1 2.6987 -0.6219 -4.0857 42 1 5.6171 0.5815 -5.9553 43 1 6.4010 1.2805 -4.5181 44 1 6.7858 -0.9984 -3.6197 45 1 6.0017 -1.6973 -5.0568 46 1 7.7202 -0.6498 -6.5047 47 1 8.5047 0.0493 -5.0680 48 1 8.2841 -2.7417 -4.6934 49 1 12.2599 -4.3711 -6.0722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754376696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:59 Heat of formation + Delta-G solvation = -117.031749 kcal Electronic energy + Delta-G solvation = -27178.644627 eV Core-core repulsion = 23334.371250 eV Total energy + Delta-G solvation = -3844.273377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66074 -39.53731 -37.28662 -36.38136 -34.97525 -34.41625 -32.29087 -30.80863 -30.50493 -29.00255 -27.07637 -26.96564 -25.52968 -23.75024 -23.57687 -22.16477 -21.04036 -20.29014 -19.13914 -17.51463 -17.40309 -16.92677 -16.70586 -16.34862 -15.93078 -15.76125 -15.48442 -15.18689 -14.54553 -14.47036 -14.23774 -14.10891 -13.75084 -13.52424 -13.07151 -13.01573 -12.81814 -12.68179 -12.66134 -12.46932 -12.22226 -12.00818 -11.83365 -11.68001 -11.26595 -11.17583 -11.02092 -10.90067 -10.77020 -10.60731 -10.48547 -10.33010 -10.10796 -9.78493 -9.56137 -9.36868 -8.85915 -8.72749 -7.19446 -5.73491 -3.08725 2.55218 2.89262 3.29670 3.40629 3.44389 3.48076 3.72884 4.16672 4.34351 4.43335 4.57314 4.62777 4.72675 4.82398 4.88701 4.93441 5.01260 5.04251 5.06217 5.11540 5.14716 5.19773 5.26308 5.30407 5.31867 5.39131 5.45074 5.48774 5.55359 5.61312 5.65938 5.78576 5.82715 5.93700 5.97941 6.04633 6.19988 6.27762 6.46461 6.73228 6.77413 6.80019 7.03002 7.28264 8.02927 8.11041 8.45833 9.24932 9.97568 10.17775 11.45029 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.002681 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.626942 B =10439.996256 C =11062.678040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.058 3.942 4 H 0.069 0.931 5 C 0.042 3.958 6 O -0.374 6.374 7 C 0.061 3.939 8 C -0.152 4.152 9 C -0.068 4.068 10 H 0.090 0.910 11 C -0.130 4.130 12 C 0.511 3.489 13 O -0.533 6.533 14 N -0.617 5.617 15 C 0.076 3.924 16 C 0.118 3.882 17 C -0.143 4.143 18 C 0.161 3.839 19 N -0.757 5.757 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.026 0.974 47 H 0.028 0.972 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.699 12.416 11.548 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.286 6.286 3 C -0.001 4.001 4 H 0.087 0.913 5 C -0.035 4.035 6 O -0.293 6.293 7 C -0.015 4.015 8 C -0.189 4.189 9 C -0.087 4.087 10 H 0.108 0.892 11 C -0.170 4.170 12 C 0.299 3.701 13 O -0.410 6.410 14 N -0.351 5.351 15 C -0.067 4.067 16 C -0.004 4.004 17 C -0.182 4.182 18 C 0.033 3.967 19 N -0.402 5.402 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.900 12.427 11.853 32.762 hybrid contribution -0.685 -0.778 0.296 1.078 sum -28.586 11.649 12.149 33.173 Atomic orbital electron populations 1.22806 0.81455 1.02874 0.99658 1.88006 1.19090 1.26643 1.94908 1.22875 0.95127 0.85749 0.96316 0.91303 1.23012 0.94333 0.93180 0.93003 1.87950 1.22442 1.65249 1.53648 1.22622 0.84355 1.00781 0.93769 1.22291 1.01488 0.99711 0.95449 1.21065 0.93705 1.01046 0.92909 0.89154 1.21666 0.95605 1.04327 0.95364 1.20678 0.90745 0.77264 0.81407 1.90687 1.37900 1.45647 1.66744 1.47941 1.10998 1.63069 1.13046 1.21821 0.87331 0.99091 0.98464 1.21467 0.83736 0.99193 0.96016 1.22103 0.97255 0.97010 1.01790 1.20517 0.89739 0.89813 0.96642 1.42709 1.20808 1.15584 1.61137 1.19077 0.92758 1.01477 1.23989 0.89196 1.24678 0.96516 0.97838 1.00261 1.69705 1.13463 1.26872 1.48304 0.86526 0.78301 0.82871 0.80749 1.21105 1.21666 1.20334 0.94182 0.89568 0.94215 0.92334 0.89009 0.93210 0.88725 0.90767 0.88710 0.89368 0.88044 0.92622 0.90631 0.91054 0.90437 0.89622 0.91641 0.92118 0.95563 0.95410 0.80711 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.37 -3.28 9.07 -42.72 -0.39 -3.67 16 3 C 0.06 0.45 2.43 -26.60 -0.06 0.38 16 4 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 5 C 0.04 0.34 6.49 37.20 0.24 0.58 16 6 O -0.37 -4.17 10.70 -42.72 -0.46 -4.62 16 7 C 0.06 0.64 6.84 37.20 0.25 0.89 16 8 C -0.15 -1.70 4.97 -26.59 -0.13 -1.83 16 9 C -0.07 -0.64 1.75 -90.44 -0.16 -0.79 16 10 H 0.09 0.87 7.95 -51.93 -0.41 0.46 16 11 C -0.13 -1.14 3.48 -27.88 -0.10 -1.23 16 12 C 0.51 6.21 7.41 -10.98 -0.08 6.13 16 13 O -0.53 -8.40 13.58 5.55 0.08 -8.33 16 14 N -0.62 -6.88 2.87 -181.57 -0.52 -7.40 16 15 C 0.08 0.56 10.25 59.85 0.61 1.18 16 16 C 0.12 1.53 5.41 -4.04 -0.02 1.51 16 17 C -0.14 -2.29 5.65 -26.73 -0.15 -2.44 16 18 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 19 N -0.76 -18.94 5.41 -59.91 -0.32 -19.27 16 20 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 21 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -30.10 13.97 55.49 0.78 -29.33 16 24 Si 0.89 22.84 27.74 -169.99 -4.71 18.12 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 28 H 0.04 0.17 8.09 -51.92 -0.42 -0.25 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.20 7.86 -51.93 -0.41 -0.21 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.61 7.86 -51.93 -0.41 0.21 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 36 H 0.09 1.26 6.07 -51.93 -0.32 0.95 16 37 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 38 H 0.10 0.88 7.03 -51.93 -0.37 0.51 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 41 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 42 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.09 1.23 7.42 -51.93 -0.39 0.84 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.36 8.83 5.53 -40.82 -0.23 8.61 16 49 H 0.26 7.91 8.31 -40.82 -0.34 7.58 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -36.00 385.58 -7.27 -43.27 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.74 Total: 3.92 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 1.22 Total: 1.49 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.07 Total: -56.00 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.77 Total: -16.62 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.00 -7.27 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754376696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.760 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds