Wall clock time and date at job start Tue Mar 31 2020 11:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48497 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46972 * 299.99829 * 3 2 1 6 6 H 1.48496 * 109.47473 * 59.99786 * 3 2 1 7 7 C 1.38813 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99418 * 201.26533 * 7 2 1 9 9 N 1.36930 * 120.00114 * 21.25765 * 7 2 1 10 10 C 1.46504 * 120.00083 * 37.42505 * 9 7 2 11 11 C 1.53004 * 109.47010 * 89.99486 * 10 9 7 12 12 N 1.46494 * 109.46801 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99959 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00068 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00357 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47205 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46973 * 180.02562 * 16 15 13 18 18 F 1.39894 * 109.46939 * 179.97438 * 17 16 15 19 19 C 1.46500 * 120.00343 * 217.41758 * 9 7 2 20 20 C 1.54253 * 108.89293 * 57.67531 * 19 9 7 21 21 C 1.50476 * 108.52117 * 159.26248 * 20 19 9 22 22 C 1.54069 * 112.49643 * 94.15549 * 21 20 19 23 23 C 1.54066 * 112.81509 * 318.27530 * 22 21 20 24 24 C 1.50473 * 112.49570 * 318.29110 * 23 22 21 25 25 C 1.45541 * 108.89924 * 294.79413 * 19 9 7 26 26 H 0.96999 * 119.99703 * 354.93754 * 1 2 3 27 27 H 1.08993 * 109.47158 * 209.99757 * 10 9 7 28 28 H 1.09002 * 109.46930 * 329.99643 * 10 9 7 29 29 H 1.09001 * 109.46778 * 300.00206 * 11 10 9 30 30 H 1.08993 * 109.46973 * 60.00217 * 11 10 9 31 31 H 0.96998 * 120.00404 * 359.97438 * 12 11 10 32 32 H 1.09006 * 109.46986 * 300.00556 * 15 13 12 33 33 H 1.09002 * 109.47071 * 60.00146 * 15 13 12 34 34 H 1.09003 * 109.47049 * 299.99208 * 16 15 13 35 35 H 1.08990 * 109.47655 * 59.99610 * 16 15 13 36 36 H 1.09001 * 109.47027 * 299.99167 * 17 16 15 37 37 H 1.08993 * 109.47609 * 59.99721 * 17 16 15 38 38 H 1.08994 * 108.87526 * 176.18401 * 19 9 7 39 39 H 1.09000 * 109.62468 * 278.97393 * 20 19 9 40 40 H 1.08994 * 109.62363 * 39.55070 * 20 19 9 41 41 H 1.08996 * 108.88168 * 333.37525 * 21 20 19 42 42 H 1.08998 * 108.87255 * 214.92501 * 21 20 19 43 43 H 1.08995 * 108.81194 * 197.42127 * 22 21 20 44 44 H 1.08999 * 108.72960 * 79.07661 * 22 21 20 45 45 H 1.08997 * 108.88078 * 197.50899 * 23 22 21 46 46 H 1.09000 * 108.87720 * 79.06400 * 23 22 21 47 47 H 1.08994 * 109.62847 * 334.43772 * 24 23 22 48 48 H 1.09006 * 109.62357 * 213.86227 * 24 23 22 49 49 H 1.09004 * 108.89165 * 303.44207 * 25 19 9 50 50 H 1.09004 * 108.89585 * 62.02446 * 25 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0351 -1.2341 0.3387 9 7 1.3954 -2.3475 -0.4310 10 6 0.4658 -2.2991 -1.5622 11 6 1.2352 -2.5273 -2.8648 12 7 0.3057 -2.4783 -3.9960 13 6 0.7626 -2.6537 -5.2518 14 8 1.9432 -2.8525 -5.4453 15 6 -0.1937 -2.6038 -6.4155 16 6 0.5758 -2.8319 -7.7181 17 6 -0.3951 -2.7807 -8.8995 18 9 0.3086 -2.9886 -10.0906 19 6 1.6674 -3.6213 0.2395 20 6 1.3140 -3.4842 1.7347 21 6 1.0991 -4.8607 2.3033 22 6 2.3729 -5.4363 2.9513 23 6 3.6427 -5.1550 2.1254 24 6 3.4222 -5.3422 0.6487 25 6 3.0633 -3.9758 0.0298 26 1 -0.4850 0.8368 0.0741 27 1 -0.2894 -3.0762 -1.4454 28 1 -0.0189 -1.3232 -1.5927 29 1 1.9905 -1.7500 -2.9816 30 1 1.7198 -3.5031 -2.8343 31 1 -0.6386 -2.3196 -3.8413 32 1 -0.9487 -3.3814 -6.2989 33 1 -0.6787 -1.6281 -6.4457 34 1 1.3308 -2.0545 -7.8349 35 1 1.0605 -3.8076 -7.6877 36 1 -1.1505 -3.5578 -8.7830 37 1 -0.8794 -1.8047 -8.9298 38 1 1.0370 -4.3935 -0.2014 39 1 2.1331 -2.9943 2.2611 40 1 0.4022 -2.8969 1.8430 41 1 0.7788 -5.5271 1.5025 42 1 0.3117 -4.8125 3.0555 43 1 2.2557 -6.5145 3.0596 44 1 2.4922 -4.9950 3.9408 45 1 4.4330 -5.8307 2.4525 46 1 3.9614 -4.1286 2.3071 47 1 2.6041 -6.0439 0.4867 48 1 4.3331 -5.7248 0.1882 49 1 3.2616 -4.0105 -1.0415 50 1 3.6937 -3.2092 0.4804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754545680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:59 Heat of formation + Delta-G solvation = -101.186257 kcal Electronic energy + Delta-G solvation = -27139.949163 eV Core-core repulsion = 23308.735687 eV Total energy + Delta-G solvation = -3831.213475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.75671 -39.40014 -38.61159 -35.72360 -34.14667 -33.90615 -31.89824 -31.49580 -30.15653 -28.20568 -26.62183 -24.55424 -24.08014 -23.23351 -22.04275 -20.77389 -20.01292 -19.67318 -18.76007 -17.08237 -16.66184 -16.35521 -15.96789 -15.45874 -15.22374 -15.17950 -14.80536 -14.72441 -14.16383 -14.12087 -13.89236 -13.42608 -13.23911 -13.15806 -12.58159 -12.42795 -12.33743 -12.02091 -11.82276 -11.59081 -11.53369 -11.38300 -11.19313 -11.04099 -10.91581 -10.81600 -10.64690 -10.46121 -10.24075 -10.18814 -10.01105 -9.87262 -9.74026 -9.67237 -9.57307 -9.28870 -8.59737 -8.47994 -6.58965 -5.85964 -3.39839 2.92846 3.31339 3.41520 3.44623 3.50337 4.42091 4.54441 4.58103 4.61837 4.83164 5.04495 5.10840 5.19018 5.21914 5.25772 5.30415 5.38661 5.49336 5.58149 5.67332 5.78588 5.82525 5.85883 5.91651 6.07581 6.09295 6.09842 6.13085 6.24626 6.25698 6.43625 6.50169 6.55837 6.58251 6.62022 6.70570 6.77364 6.86341 6.97159 6.99140 7.04893 7.30084 7.40895 7.54955 7.82400 7.90639 8.48733 8.56951 9.14277 9.76625 10.34483 11.16780 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003338 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.412474 B = 8385.363095 C =10047.462255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.015 3.985 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.061 0.939 9 N -0.578 5.578 10 C 0.138 3.862 11 C 0.098 3.902 12 N -0.721 5.721 13 C 0.505 3.495 14 O -0.549 6.549 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.062 3.938 18 F -0.220 7.220 19 C 0.178 3.822 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.254 0.746 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.397 0.603 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -8.249 -5.896 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.185 4.185 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.079 0.921 9 N -0.298 5.298 10 C 0.011 3.989 11 C -0.028 4.028 12 N -0.371 5.371 13 C 0.290 3.710 14 O -0.427 6.427 15 C -0.180 4.180 16 C -0.176 4.176 17 C 0.007 3.993 18 F -0.201 7.201 19 C 0.072 3.928 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.162 4.162 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.231 0.769 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.601 -8.246 -6.068 10.563 hybrid contribution -0.006 1.040 0.130 1.048 sum -2.607 -7.206 -5.938 9.695 Atomic orbital electron populations 1.69887 1.05486 1.25755 1.52203 1.25146 0.95025 0.98499 0.99800 0.86382 0.79965 0.84157 0.77266 1.20069 1.21532 1.21698 1.18969 0.94292 0.85069 1.39823 0.92117 1.43812 1.51935 1.03387 1.30677 1.21069 0.91146 1.02904 0.83786 1.22413 0.93430 1.00727 0.86219 1.46148 1.12367 1.72118 1.06494 1.20504 0.89229 0.76918 0.84310 1.90696 1.17514 1.49241 1.85242 1.21555 0.98778 1.04411 0.93290 1.21894 0.98520 1.05128 0.92074 1.22023 0.94039 1.02796 0.80485 1.92763 1.81471 1.96719 1.49166 1.19359 0.93622 0.88161 0.91651 1.21619 1.02323 0.94383 0.96908 1.21370 0.96334 0.98193 0.99495 1.21888 0.95013 0.99473 0.98633 1.21318 0.96836 1.01664 0.95521 1.21294 1.00448 0.98275 0.95263 1.20975 0.99776 0.95319 1.00143 0.93566 0.95491 0.88223 0.91839 0.93352 0.76932 0.88800 0.88701 0.89984 0.90028 0.90788 0.90753 0.94184 0.92335 0.91322 0.92900 0.93338 0.93295 0.92927 0.93425 0.91874 0.92324 0.92928 0.93024 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.45 55.49 0.64 -23.16 16 2 C 0.02 0.40 4.96 -17.43 -0.09 0.31 16 3 Si 0.89 20.95 29.61 -169.99 -5.03 15.92 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.37 8.43 -15.06 -0.13 -6.50 16 8 H 0.06 1.58 6.99 -52.49 -0.37 1.21 16 9 N -0.58 -13.07 2.28 -168.95 -0.38 -13.45 16 10 C 0.14 2.92 5.38 -4.04 -0.02 2.90 16 11 C 0.10 1.90 6.00 -4.04 -0.02 1.88 16 12 N -0.72 -11.30 5.56 -60.30 -0.33 -11.64 16 13 C 0.51 7.83 7.83 -10.98 -0.09 7.74 16 14 O -0.55 -10.93 15.98 5.56 0.09 -10.85 16 15 C -0.14 -1.40 5.70 -27.88 -0.16 -1.56 16 16 C -0.14 -1.46 4.96 -26.73 -0.13 -1.59 16 17 C 0.06 0.51 7.55 37.16 0.28 0.79 16 18 F -0.22 -2.54 17.36 2.25 0.04 -2.50 16 19 C 0.18 3.47 2.13 -70.79 -0.15 3.32 16 20 C -0.11 -2.14 4.54 -27.34 -0.12 -2.26 16 21 C -0.12 -1.77 5.31 -27.43 -0.15 -1.91 16 22 C -0.11 -1.51 5.85 -25.62 -0.15 -1.66 16 23 C -0.12 -1.61 5.31 -27.44 -0.15 -1.76 16 24 C -0.11 -1.69 5.61 -27.35 -0.15 -1.84 16 25 C -0.12 -2.22 4.51 -29.60 -0.13 -2.35 16 26 H 0.25 6.63 8.32 -40.82 -0.34 6.30 16 27 H 0.03 0.53 7.87 -51.93 -0.41 0.12 16 28 H 0.10 2.38 5.50 -51.93 -0.29 2.09 16 29 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.40 5.12 8.47 -40.82 -0.35 4.77 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.76 7.06 -51.93 -0.37 0.40 16 39 H 0.06 1.16 6.98 -51.93 -0.36 0.80 16 40 H 0.07 1.50 8.12 -51.93 -0.42 1.08 16 41 H 0.05 0.79 6.63 -51.93 -0.34 0.44 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.96 6.63 -51.93 -0.34 0.62 16 47 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.06 1.24 6.36 -51.93 -0.33 0.91 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -29.47 387.43 -9.50 -38.97 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.99 Total: 5.37 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.36 Total: -4.50 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.08 Total: -48.25 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.47 -9.50 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754545680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.219 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds