Wall clock time and date at job start Tue Mar 31 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 C 1.53000 * 109.47123 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47123 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.46937 * 60.00253 * 5 4 3 7 7 F 1.39901 * 109.46776 * 300.00019 * 5 4 3 8 8 C 1.50696 * 109.46959 * 180.02562 * 5 4 3 9 9 O 1.21286 * 119.99699 * 247.19558 * 8 5 4 10 10 N 1.34771 * 120.00593 * 67.19334 * 8 5 4 11 11 C 1.47487 * 127.03386 * 5.07078 * 10 8 5 12 12 C 1.54006 * 107.08711 * 154.51613 * 11 10 8 13 13 C 1.54620 * 105.04036 * 1.30829 * 12 11 10 14 14 C 1.53000 * 110.73525 * 263.50870 * 13 12 11 15 15 C 1.52998 * 110.73544 * 140.36942 * 13 12 11 16 16 N 1.46497 * 109.47622 * 61.44926 * 15 13 12 17 17 C 1.36935 * 120.00323 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99947 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99959 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47276 * 59.99348 * 21 19 17 23 23 H 1.48503 * 109.47450 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47039 * 299.99471 * 21 19 17 25 25 C 1.48123 * 127.03596 * 184.75720 * 10 8 5 26 26 H 1.08993 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46927 * 299.99866 * 1 2 3 28 28 H 1.09000 * 109.47146 * 59.99716 * 1 2 3 29 29 H 1.09004 * 109.47232 * 240.00141 * 2 1 3 30 30 H 1.08997 * 109.47391 * 119.99820 * 2 1 3 31 31 H 1.08996 * 109.47110 * 60.00246 * 3 2 1 32 32 H 1.08997 * 109.46841 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.47146 * 300.00283 * 4 3 2 34 34 H 1.09004 * 109.47232 * 60.00141 * 4 3 2 35 35 H 1.08997 * 109.47428 * 54.21720 * 6 5 4 36 36 H 1.08998 * 109.46808 * 174.22298 * 6 5 4 37 37 H 1.09006 * 109.46828 * 294.21508 * 6 5 4 38 38 H 1.09006 * 109.91451 * 273.87726 * 11 10 8 39 39 H 1.09003 * 109.91375 * 34.96188 * 11 10 8 40 40 H 1.08999 * 110.32366 * 120.19816 * 12 11 10 41 41 H 1.08994 * 110.32763 * 242.30932 * 12 11 10 42 42 H 1.08994 * 109.47116 * 58.55441 * 14 13 12 43 43 H 1.09004 * 109.46771 * 178.54814 * 14 13 12 44 44 H 1.08994 * 109.47255 * 298.54776 * 14 13 12 45 45 H 1.09006 * 109.46759 * 181.45191 * 15 13 12 46 46 H 1.09003 * 109.47065 * 301.44938 * 15 13 12 47 47 H 0.97000 * 119.99652 * 0.02562 * 16 15 13 48 48 H 0.97000 * 120.00209 * 180.02562 * 20 19 17 49 49 H 1.08993 * 110.65874 * 337.76522 * 25 10 8 50 50 H 1.09000 * 110.66435 * 100.88623 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0013 6 6 3.5696 3.6059 1.2505 7 9 3.6141 3.5448 -1.1410 8 6 5.5870 2.8850 0.0013 9 8 6.1934 3.2917 0.9698 10 7 6.2609 2.4331 -1.0748 11 6 5.6896 2.0041 -2.3650 12 6 6.7836 2.1984 -3.4313 13 6 8.0108 2.7295 -2.6550 14 6 8.0819 4.2559 -2.7326 15 6 9.3010 2.1014 -3.1858 16 7 9.4762 2.4623 -4.5948 17 6 10.5689 2.0118 -5.2863 18 1 11.3013 1.3900 -4.7931 19 6 10.7352 2.3542 -6.6211 20 7 9.8423 3.1116 -7.2224 21 14 12.2254 1.7390 -7.5646 22 1 12.2281 0.2540 -7.5722 23 1 12.1687 2.2406 -8.9613 24 1 13.4638 2.2330 -6.9107 25 6 7.7275 2.2717 -1.2058 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9338 0.9286 -0.8891 35 1 3.8455 3.0355 2.1374 36 1 4.0149 4.5993 1.3042 37 1 2.4844 3.6964 1.1998 38 1 5.4038 0.9534 -2.3135 39 1 4.8191 2.6140 -2.6067 40 1 7.0201 1.2475 -3.9088 41 1 6.4612 2.9256 -4.1765 42 1 7.1673 4.6835 -2.3218 43 1 8.9382 4.6093 -2.1581 44 1 8.1909 4.5621 -3.7729 45 1 10.1488 2.4698 -2.6082 46 1 9.2420 1.0169 -3.0932 47 1 8.8186 3.0211 -5.0376 48 1 9.9583 3.3507 -8.1553 49 1 8.2498 2.9095 -0.4928 50 1 8.0132 1.2284 -1.0715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754699075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:03 Heat of formation + Delta-G solvation = -93.839281 kcal Electronic energy + Delta-G solvation = -27683.133795 eV Core-core repulsion = 23852.238909 eV Total energy + Delta-G solvation = -3830.894886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.14816 -40.20856 -38.26175 -36.46337 -34.86137 -33.20288 -32.57661 -30.25720 -29.49461 -29.02575 -27.18883 -25.91577 -24.88531 -23.47424 -22.50725 -22.08262 -21.01892 -19.49543 -18.76296 -17.51678 -17.11286 -16.30902 -16.23844 -15.96983 -15.61753 -15.00004 -14.62977 -14.25509 -14.03469 -13.82229 -13.74334 -13.68972 -13.40308 -13.15497 -13.04961 -12.73444 -12.64589 -12.48043 -12.45035 -12.30070 -11.95607 -11.73064 -11.68087 -11.53285 -11.46847 -11.24243 -11.02806 -10.96038 -10.81562 -10.80045 -10.53758 -10.34042 -10.26243 -9.97780 -9.77908 -9.64396 -8.87568 -8.70286 -6.92136 -5.76941 -3.05218 2.31517 2.75002 3.43917 3.48528 3.49315 3.92566 4.09064 4.31334 4.37558 4.56936 4.64138 4.68258 4.78359 4.82865 4.85703 5.02057 5.09568 5.24799 5.26366 5.30635 5.40577 5.43294 5.44429 5.50013 5.55898 5.59298 5.64837 5.67291 5.75932 5.79680 5.84333 5.89806 5.91334 5.92231 5.97806 5.99440 6.15006 6.24909 6.32597 6.44037 6.54974 6.64988 6.77458 6.84515 7.42911 7.69408 7.90565 8.42165 9.53599 10.11066 10.46245 11.45877 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.002772 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.007256 B =10097.899349 C =10732.411094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.141 4.141 5 C 0.112 3.888 6 C -0.158 4.158 7 F -0.191 7.191 8 C 0.517 3.483 9 O -0.530 6.530 10 N -0.605 5.605 11 C 0.090 3.910 12 C -0.118 4.118 13 C -0.078 4.078 14 C -0.128 4.128 15 C 0.169 3.831 16 N -0.728 5.728 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.113 3.887 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.084 0.916 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.307 -3.833 16.047 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.179 4.179 5 C 0.090 3.910 6 C -0.215 4.215 7 F -0.172 7.172 8 C 0.303 3.697 9 O -0.407 6.407 10 N -0.338 5.338 11 C -0.033 4.033 12 C -0.156 4.156 13 C -0.080 4.080 14 C -0.186 4.186 15 C 0.041 3.959 16 N -0.373 5.373 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.009 4.009 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.898 -3.646 16.563 24.657 hybrid contribution 0.645 -0.138 -0.953 1.159 sum -17.252 -3.783 15.611 23.572 Atomic orbital electron populations 1.21766 0.95698 1.01659 1.01891 1.21516 0.96028 0.96402 1.02239 1.21648 0.93465 0.97568 1.03088 1.22243 0.97582 0.93362 1.04675 1.21171 0.90520 0.94417 0.84872 1.22195 1.01821 1.01946 0.95557 1.92870 1.89595 1.82554 1.52169 1.20393 0.89247 0.77749 0.82307 1.90722 1.69477 1.46507 1.33978 1.48770 1.08712 1.62909 1.13394 1.22464 0.98331 0.99754 0.82705 1.22546 0.93251 1.03201 0.96631 1.21785 0.96317 0.96781 0.93076 1.21696 1.00558 0.93424 1.02883 1.20580 0.92105 0.95931 0.87291 1.42312 1.27581 1.61689 1.05685 1.19174 0.99893 1.25205 0.92746 0.91287 1.24721 0.98662 1.00580 0.96964 1.69644 1.35901 1.41116 1.11582 0.86272 0.82562 0.78252 0.79108 1.21319 1.21732 1.21312 1.22544 0.79540 1.01375 0.97444 0.92737 0.92777 0.92604 0.91784 0.91971 0.91265 0.91015 0.89652 0.89893 0.89982 0.90721 0.90488 0.91579 0.89768 0.89636 0.90157 0.93722 0.92814 0.91201 0.96075 0.96104 0.78060 0.93478 0.89741 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.84 4.74 -26.73 -0.13 -0.97 16 4 C -0.14 -1.18 4.44 -26.73 -0.12 -1.30 16 5 C 0.11 1.20 0.90 -91.77 -0.08 1.12 16 6 C -0.16 -1.47 7.71 37.15 0.29 -1.18 16 7 F -0.19 -2.28 14.14 2.25 0.03 -2.25 16 8 C 0.52 7.17 6.91 -10.99 -0.08 7.10 16 9 O -0.53 -8.87 16.19 5.55 0.09 -8.78 16 10 N -0.61 -8.16 3.21 -169.97 -0.54 -8.70 16 11 C 0.09 1.10 5.66 -2.98 -0.02 1.08 16 12 C -0.12 -1.73 5.52 -25.36 -0.14 -1.87 16 13 C -0.08 -1.24 0.64 -152.82 -0.10 -1.34 16 14 C -0.13 -2.13 8.28 37.16 0.31 -1.82 16 15 C 0.17 3.28 5.10 -4.04 -0.02 3.26 16 16 N -0.73 -17.74 5.15 -59.91 -0.31 -18.04 16 17 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.11 1.61 5.99 -2.31 -0.01 1.60 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 32 H 0.07 0.55 7.80 -51.93 -0.41 0.14 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.71 6.14 -51.93 -0.32 0.39 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16 37 H 0.08 0.56 6.75 -51.93 -0.35 0.21 16 38 H 0.07 0.69 7.28 -51.93 -0.38 0.31 16 39 H 0.08 1.00 6.09 -51.93 -0.32 0.68 16 40 H 0.09 1.32 7.85 -51.93 -0.41 0.92 16 41 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 42 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.29 7.11 -51.93 -0.37 0.92 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 47 H 0.38 9.81 6.37 -40.82 -0.26 9.55 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.08 1.27 7.71 -51.93 -0.40 0.87 16 50 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -31.07 389.10 -8.29 -39.36 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.98 Total: 5.39 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.14 Total: -2.98 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.13 Total: -53.82 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.07 -8.29 -39.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.479 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds