Wall clock time and date at job start Tue Mar 31 2020 11:47:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.47123 * 2 1
4 4 C 1.53000 * 109.47123 * 179.97438 * 3 2 1
5 5 C 1.53004 * 109.47123 * 180.02562 * 4 3 2
6 6 C 1.52993 * 109.46937 * 60.00253 * 5 4 3
7 7 F 1.39901 * 109.46776 * 300.00019 * 5 4 3
8 8 C 1.50696 * 109.46959 * 180.02562 * 5 4 3
9 9 O 1.21286 * 119.99699 * 247.19558 * 8 5 4
10 10 N 1.34771 * 120.00593 * 67.19334 * 8 5 4
11 11 C 1.47487 * 127.03386 * 5.07078 * 10 8 5
12 12 C 1.54006 * 107.08711 * 154.51613 * 11 10 8
13 13 C 1.54620 * 105.04036 * 1.30829 * 12 11 10
14 14 C 1.53000 * 110.73525 * 263.50870 * 13 12 11
15 15 C 1.52998 * 110.73544 * 140.36942 * 13 12 11
16 16 N 1.46497 * 109.47622 * 61.44926 * 15 13 12
17 17 C 1.36935 * 120.00323 * 179.97438 * 16 15 13
18 18 H 1.07997 * 119.99947 * 0.02562 * 17 16 15
19 19 C 1.38809 * 120.00231 * 180.02562 * 17 16 15
20 20 N 1.31624 * 119.99959 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 120.00311 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.47276 * 59.99348 * 21 19 17
23 23 H 1.48503 * 109.47450 * 179.97438 * 21 19 17
24 24 H 1.48506 * 109.47039 * 299.99471 * 21 19 17
25 25 C 1.48123 * 127.03596 * 184.75720 * 10 8 5
26 26 H 1.08993 * 109.46780 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.46927 * 299.99866 * 1 2 3
28 28 H 1.09000 * 109.47146 * 59.99716 * 1 2 3
29 29 H 1.09004 * 109.47232 * 240.00141 * 2 1 3
30 30 H 1.08997 * 109.47391 * 119.99820 * 2 1 3
31 31 H 1.08996 * 109.47110 * 60.00246 * 3 2 1
32 32 H 1.08997 * 109.46841 * 300.00157 * 3 2 1
33 33 H 1.09000 * 109.47146 * 300.00283 * 4 3 2
34 34 H 1.09004 * 109.47232 * 60.00141 * 4 3 2
35 35 H 1.08997 * 109.47428 * 54.21720 * 6 5 4
36 36 H 1.08998 * 109.46808 * 174.22298 * 6 5 4
37 37 H 1.09006 * 109.46828 * 294.21508 * 6 5 4
38 38 H 1.09006 * 109.91451 * 273.87726 * 11 10 8
39 39 H 1.09003 * 109.91375 * 34.96188 * 11 10 8
40 40 H 1.08999 * 110.32366 * 120.19816 * 12 11 10
41 41 H 1.08994 * 110.32763 * 242.30932 * 12 11 10
42 42 H 1.08994 * 109.47116 * 58.55441 * 14 13 12
43 43 H 1.09004 * 109.46771 * 178.54814 * 14 13 12
44 44 H 1.08994 * 109.47255 * 298.54776 * 14 13 12
45 45 H 1.09006 * 109.46759 * 181.45191 * 15 13 12
46 46 H 1.09003 * 109.47065 * 301.44938 * 15 13 12
47 47 H 0.97000 * 119.99652 * 0.02562 * 16 15 13
48 48 H 0.97000 * 120.00209 * 180.02562 * 20 19 17
49 49 H 1.08993 * 110.65874 * 337.76522 * 25 10 8
50 50 H 1.09000 * 110.66435 * 100.88623 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 6 4.0800 2.8851 0.0013
6 6 3.5696 3.6059 1.2505
7 9 3.6141 3.5448 -1.1410
8 6 5.5870 2.8850 0.0013
9 8 6.1934 3.2917 0.9698
10 7 6.2609 2.4331 -1.0748
11 6 5.6896 2.0041 -2.3650
12 6 6.7836 2.1984 -3.4313
13 6 8.0108 2.7295 -2.6550
14 6 8.0819 4.2559 -2.7326
15 6 9.3010 2.1014 -3.1858
16 7 9.4762 2.4623 -4.5948
17 6 10.5689 2.0118 -5.2863
18 1 11.3013 1.3900 -4.7931
19 6 10.7352 2.3542 -6.6211
20 7 9.8423 3.1116 -7.2224
21 14 12.2254 1.7390 -7.5646
22 1 12.2281 0.2540 -7.5722
23 1 12.1687 2.2406 -8.9613
24 1 13.4638 2.2330 -6.9107
25 6 7.7275 2.2717 -1.2058
26 1 -0.3632 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 1.8934 -0.5138 0.8900
31 1 1.6767 1.9563 0.8900
32 1 1.6766 1.9563 -0.8900
33 1 3.9330 0.9288 0.8908
34 1 3.9338 0.9286 -0.8891
35 1 3.8455 3.0355 2.1374
36 1 4.0149 4.5993 1.3042
37 1 2.4844 3.6964 1.1998
38 1 5.4038 0.9534 -2.3135
39 1 4.8191 2.6140 -2.6067
40 1 7.0201 1.2475 -3.9088
41 1 6.4612 2.9256 -4.1765
42 1 7.1673 4.6835 -2.3218
43 1 8.9382 4.6093 -2.1581
44 1 8.1909 4.5621 -3.7729
45 1 10.1488 2.4698 -2.6082
46 1 9.2420 1.0169 -3.0932
47 1 8.8186 3.0211 -5.0376
48 1 9.9583 3.3507 -8.1553
49 1 8.2498 2.9095 -0.4928
50 1 8.0132 1.2284 -1.0715
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754699075.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:47:03
Heat of formation + Delta-G solvation = -93.839281 kcal
Electronic energy + Delta-G solvation = -27683.133795 eV
Core-core repulsion = 23852.238909 eV
Total energy + Delta-G solvation = -3830.894886 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 314.211 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-48.14816 -40.20856 -38.26175 -36.46337 -34.86137 -33.20288 -32.57661 -30.25720
-29.49461 -29.02575 -27.18883 -25.91577 -24.88531 -23.47424 -22.50725 -22.08262
-21.01892 -19.49543 -18.76296 -17.51678 -17.11286 -16.30902 -16.23844 -15.96983
-15.61753 -15.00004 -14.62977 -14.25509 -14.03469 -13.82229 -13.74334 -13.68972
-13.40308 -13.15497 -13.04961 -12.73444 -12.64589 -12.48043 -12.45035 -12.30070
-11.95607 -11.73064 -11.68087 -11.53285 -11.46847 -11.24243 -11.02806 -10.96038
-10.81562 -10.80045 -10.53758 -10.34042 -10.26243 -9.97780 -9.77908 -9.64396
-8.87568 -8.70286 -6.92136 -5.76941 -3.05218 2.31517 2.75002 3.43917
3.48528 3.49315 3.92566 4.09064 4.31334 4.37558 4.56936 4.64138
4.68258 4.78359 4.82865 4.85703 5.02057 5.09568 5.24799 5.26366
5.30635 5.40577 5.43294 5.44429 5.50013 5.55898 5.59298 5.64837
5.67291 5.75932 5.79680 5.84333 5.89806 5.91334 5.92231 5.97806
5.99440 6.15006 6.24909 6.32597 6.44037 6.54974 6.64988 6.77458
6.84515 7.42911 7.69408 7.90565 8.42165 9.53599 10.11066 10.46245
11.45877
Molecular weight = 314.21amu
Principal moments of inertia in cm(-1)
A = 0.021600 B = 0.002772 C = 0.002608
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.007256 B =10097.899349 C =10732.411094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.124 4.124
3 C -0.120 4.120
4 C -0.141 4.141
5 C 0.112 3.888
6 C -0.158 4.158
7 F -0.191 7.191
8 C 0.517 3.483
9 O -0.530 6.530
10 N -0.605 5.605
11 C 0.090 3.910
12 C -0.118 4.118
13 C -0.078 4.078
14 C -0.128 4.128
15 C 0.169 3.831
16 N -0.728 5.728
17 C -0.239 4.239
18 H 0.069 0.931
19 C -0.013 4.013
20 N -0.934 5.934
21 Si 0.907 3.093
22 H -0.286 1.286
23 H -0.291 1.291
24 H -0.286 1.286
25 C 0.113 3.887
26 H 0.054 0.946
27 H 0.053 0.947
28 H 0.055 0.945
29 H 0.063 0.937
30 H 0.062 0.938
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.085 0.915
34 H 0.083 0.917
35 H 0.081 0.919
36 H 0.074 0.926
37 H 0.076 0.924
38 H 0.066 0.934
39 H 0.084 0.916
40 H 0.085 0.915
41 H 0.080 0.920
42 H 0.044 0.956
43 H 0.053 0.947
44 H 0.069 0.931
45 H 0.021 0.979
46 H 0.021 0.979
47 H 0.385 0.615
48 H 0.255 0.745
49 H 0.084 0.916
50 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.307 -3.833 16.047 24.645
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.158 4.158
4 C -0.179 4.179
5 C 0.090 3.910
6 C -0.215 4.215
7 F -0.172 7.172
8 C 0.303 3.697
9 O -0.407 6.407
10 N -0.338 5.338
11 C -0.033 4.033
12 C -0.156 4.156
13 C -0.080 4.080
14 C -0.186 4.186
15 C 0.041 3.959
16 N -0.373 5.373
17 C -0.370 4.370
18 H 0.087 0.913
19 C -0.209 4.209
20 N -0.582 5.582
21 Si 0.738 3.262
22 H -0.213 1.213
23 H -0.217 1.217
24 H -0.213 1.213
25 C -0.009 4.009
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.074 0.926
29 H 0.082 0.918
30 H 0.080 0.920
31 H 0.087 0.913
32 H 0.090 0.910
33 H 0.103 0.897
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.093 0.907
37 H 0.095 0.905
38 H 0.084 0.916
39 H 0.102 0.898
40 H 0.104 0.896
41 H 0.098 0.902
42 H 0.063 0.937
43 H 0.072 0.928
44 H 0.088 0.912
45 H 0.039 0.961
46 H 0.039 0.961
47 H 0.219 0.781
48 H 0.065 0.935
49 H 0.103 0.897
50 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -17.898 -3.646 16.563 24.657
hybrid contribution 0.645 -0.138 -0.953 1.159
sum -17.252 -3.783 15.611 23.572
Atomic orbital electron populations
1.21766 0.95698 1.01659 1.01891 1.21516 0.96028 0.96402 1.02239
1.21648 0.93465 0.97568 1.03088 1.22243 0.97582 0.93362 1.04675
1.21171 0.90520 0.94417 0.84872 1.22195 1.01821 1.01946 0.95557
1.92870 1.89595 1.82554 1.52169 1.20393 0.89247 0.77749 0.82307
1.90722 1.69477 1.46507 1.33978 1.48770 1.08712 1.62909 1.13394
1.22464 0.98331 0.99754 0.82705 1.22546 0.93251 1.03201 0.96631
1.21785 0.96317 0.96781 0.93076 1.21696 1.00558 0.93424 1.02883
1.20580 0.92105 0.95931 0.87291 1.42312 1.27581 1.61689 1.05685
1.19174 0.99893 1.25205 0.92746 0.91287 1.24721 0.98662 1.00580
0.96964 1.69644 1.35901 1.41116 1.11582 0.86272 0.82562 0.78252
0.79108 1.21319 1.21732 1.21312 1.22544 0.79540 1.01375 0.97444
0.92737 0.92777 0.92604 0.91784 0.91971 0.91265 0.91015 0.89652
0.89893 0.89982 0.90721 0.90488 0.91579 0.89768 0.89636 0.90157
0.93722 0.92814 0.91201 0.96075 0.96104 0.78060 0.93478 0.89741
0.90582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16
2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.94 16
3 C -0.12 -0.84 4.74 -26.73 -0.13 -0.97 16
4 C -0.14 -1.18 4.44 -26.73 -0.12 -1.30 16
5 C 0.11 1.20 0.90 -91.77 -0.08 1.12 16
6 C -0.16 -1.47 7.71 37.15 0.29 -1.18 16
7 F -0.19 -2.28 14.14 2.25 0.03 -2.25 16
8 C 0.52 7.17 6.91 -10.99 -0.08 7.10 16
9 O -0.53 -8.87 16.19 5.55 0.09 -8.78 16
10 N -0.61 -8.16 3.21 -169.97 -0.54 -8.70 16
11 C 0.09 1.10 5.66 -2.98 -0.02 1.08 16
12 C -0.12 -1.73 5.52 -25.36 -0.14 -1.87 16
13 C -0.08 -1.24 0.64 -152.82 -0.10 -1.34 16
14 C -0.13 -2.13 8.28 37.16 0.31 -1.82 16
15 C 0.17 3.28 5.10 -4.04 -0.02 3.26 16
16 N -0.73 -17.74 5.15 -59.91 -0.31 -18.04 16
17 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16
18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16
20 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16
21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16
22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
25 C 0.11 1.61 5.99 -2.31 -0.01 1.60 16
26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16
32 H 0.07 0.55 7.80 -51.93 -0.41 0.14 16
33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.08 0.71 6.14 -51.93 -0.32 0.39 16
35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16
37 H 0.08 0.56 6.75 -51.93 -0.35 0.21 16
38 H 0.07 0.69 7.28 -51.93 -0.38 0.31 16
39 H 0.08 1.00 6.09 -51.93 -0.32 0.68 16
40 H 0.09 1.32 7.85 -51.93 -0.41 0.92 16
41 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16
42 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16
43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
44 H 0.07 1.29 7.11 -51.93 -0.37 0.92 16
45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
46 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16
47 H 0.38 9.81 6.37 -40.82 -0.26 9.55 16
48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
49 H 0.08 1.27 7.71 -51.93 -0.40 0.87 16
50 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16
LS Contribution 389.10 15.07 5.86 5.86
Total: -1.00 -31.07 389.10 -8.29 -39.36
By element:
Atomic # 1 Polarization: 14.37 SS G_CDS: -8.98 Total: 5.39 kcal
Atomic # 6 Polarization: -2.84 SS G_CDS: -0.14 Total: -2.98 kcal
Atomic # 7 Polarization: -53.69 SS G_CDS: -0.13 Total: -53.82 kcal
Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal
Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -31.07 -8.29 -39.36 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754699075.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.479 kcal
(2) G-P(sol) polarization free energy of solvation -31.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds