Wall clock time and date at job start Tue Mar 31 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 C 1.53000 * 109.47123 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47123 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.46937 * 60.00253 * 5 4 3 7 7 F 1.39901 * 109.46776 * 300.00019 * 5 4 3 8 8 C 1.50696 * 109.46959 * 180.02562 * 5 4 3 9 9 O 1.21286 * 119.99699 * 247.19558 * 8 5 4 10 10 N 1.34771 * 120.00593 * 67.19334 * 8 5 4 11 11 C 1.47487 * 127.03386 * 5.07078 * 10 8 5 12 12 C 1.54006 * 107.08711 * 154.51613 * 11 10 8 13 13 C 1.54620 * 105.04036 * 1.30829 * 12 11 10 14 14 C 1.53000 * 110.73525 * 263.50870 * 13 12 11 15 15 C 1.52998 * 110.73544 * 140.36942 * 13 12 11 16 16 N 1.46497 * 109.47622 * 61.44926 * 15 13 12 17 17 C 1.36935 * 120.00323 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99947 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99959 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47276 * 59.99348 * 21 19 17 23 23 H 1.48503 * 109.47450 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47039 * 299.99471 * 21 19 17 25 25 C 1.48123 * 127.03596 * 184.75720 * 10 8 5 26 26 H 1.08993 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46927 * 299.99866 * 1 2 3 28 28 H 1.09000 * 109.47146 * 59.99716 * 1 2 3 29 29 H 1.09004 * 109.47232 * 240.00141 * 2 1 3 30 30 H 1.08997 * 109.47391 * 119.99820 * 2 1 3 31 31 H 1.08996 * 109.47110 * 60.00246 * 3 2 1 32 32 H 1.08997 * 109.46841 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.47146 * 300.00283 * 4 3 2 34 34 H 1.09004 * 109.47232 * 60.00141 * 4 3 2 35 35 H 1.08997 * 109.47428 * 54.21720 * 6 5 4 36 36 H 1.08998 * 109.46808 * 174.22298 * 6 5 4 37 37 H 1.09006 * 109.46828 * 294.21508 * 6 5 4 38 38 H 1.09006 * 109.91451 * 273.87726 * 11 10 8 39 39 H 1.09003 * 109.91375 * 34.96188 * 11 10 8 40 40 H 1.08999 * 110.32366 * 120.19816 * 12 11 10 41 41 H 1.08994 * 110.32763 * 242.30932 * 12 11 10 42 42 H 1.08994 * 109.47116 * 58.55441 * 14 13 12 43 43 H 1.09004 * 109.46771 * 178.54814 * 14 13 12 44 44 H 1.08994 * 109.47255 * 298.54776 * 14 13 12 45 45 H 1.09006 * 109.46759 * 181.45191 * 15 13 12 46 46 H 1.09003 * 109.47065 * 301.44938 * 15 13 12 47 47 H 0.97000 * 119.99652 * 0.02562 * 16 15 13 48 48 H 0.97000 * 120.00209 * 180.02562 * 20 19 17 49 49 H 1.08993 * 110.65874 * 337.76522 * 25 10 8 50 50 H 1.09000 * 110.66435 * 100.88623 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0013 6 6 3.5696 3.6059 1.2505 7 9 3.6141 3.5448 -1.1410 8 6 5.5870 2.8850 0.0013 9 8 6.1934 3.2917 0.9698 10 7 6.2609 2.4331 -1.0748 11 6 5.6896 2.0041 -2.3650 12 6 6.7836 2.1984 -3.4313 13 6 8.0108 2.7295 -2.6550 14 6 8.0819 4.2559 -2.7326 15 6 9.3010 2.1014 -3.1858 16 7 9.4762 2.4623 -4.5948 17 6 10.5689 2.0118 -5.2863 18 1 11.3013 1.3900 -4.7931 19 6 10.7352 2.3542 -6.6211 20 7 9.8423 3.1116 -7.2224 21 14 12.2254 1.7390 -7.5646 22 1 12.2281 0.2540 -7.5722 23 1 12.1687 2.2406 -8.9613 24 1 13.4638 2.2330 -6.9107 25 6 7.7275 2.2717 -1.2058 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9338 0.9286 -0.8891 35 1 3.8455 3.0355 2.1374 36 1 4.0149 4.5993 1.3042 37 1 2.4844 3.6964 1.1998 38 1 5.4038 0.9534 -2.3135 39 1 4.8191 2.6140 -2.6067 40 1 7.0201 1.2475 -3.9088 41 1 6.4612 2.9256 -4.1765 42 1 7.1673 4.6835 -2.3218 43 1 8.9382 4.6093 -2.1581 44 1 8.1909 4.5621 -3.7729 45 1 10.1488 2.4698 -2.6082 46 1 9.2420 1.0169 -3.0932 47 1 8.8186 3.0211 -5.0376 48 1 9.9583 3.3507 -8.1553 49 1 8.2498 2.9095 -0.4928 50 1 8.0132 1.2284 -1.0715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754699075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:03 Heat of formation + Delta-G solvation = -110.858061 kcal Electronic energy + Delta-G solvation = -27683.871785 eV Core-core repulsion = 23852.238909 eV Total energy + Delta-G solvation = -3831.632876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.04245 -41.35618 -39.47928 -37.10054 -36.51722 -34.39405 -33.74927 -32.05053 -30.70723 -29.64379 -28.36946 -27.49864 -25.97163 -24.64198 -24.10187 -22.94238 -21.64576 -20.55865 -20.05441 -19.18278 -18.47503 -17.31066 -17.23026 -16.80682 -16.63931 -16.42661 -15.82009 -15.60282 -15.35645 -15.09097 -14.90032 -14.63039 -14.53667 -14.28403 -14.19008 -13.84328 -13.73224 -13.55363 -13.34973 -13.15383 -13.06022 -12.98464 -12.88218 -12.79529 -12.50893 -12.33118 -12.18346 -12.15571 -12.06225 -12.01411 -11.65868 -11.60821 -11.55767 -11.43475 -11.33622 -10.90633 -10.80345 -9.81926 -8.95677 -7.92309 -5.19936 1.24770 1.48967 1.51306 1.57297 1.70422 2.57991 2.99239 3.32331 3.40589 3.44792 3.55619 3.61312 3.70155 3.82008 4.09158 4.11154 4.18542 4.23012 4.30952 4.32116 4.34090 4.48395 4.57100 4.62163 4.68208 4.70117 4.75166 4.77827 4.81609 4.87142 4.93310 4.95551 4.99385 5.01683 5.06244 5.11454 5.12651 5.16465 5.26344 5.32798 5.33274 5.40869 5.42437 5.51614 5.52471 6.29662 6.35083 6.82059 7.37281 8.13086 8.37391 9.30950 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.002772 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.007256 B =10097.899349 C =10732.411094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.135 4.135 5 C 0.114 3.886 6 C -0.156 4.156 7 F -0.198 7.198 8 C 0.511 3.489 9 O -0.563 6.563 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.115 4.115 13 C -0.073 4.073 14 C -0.120 4.120 15 C 0.169 3.831 16 N -0.737 5.737 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.074 4.074 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.281 1.281 25 C 0.119 3.881 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.018 0.982 46 H 0.031 0.969 47 H 0.377 0.623 48 H 0.250 0.750 49 H 0.075 0.925 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.301 -5.196 17.104 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.173 4.173 5 C 0.092 3.908 6 C -0.214 4.214 7 F -0.179 7.179 8 C 0.299 3.701 9 O -0.442 6.442 10 N -0.337 5.337 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.074 4.074 14 C -0.177 4.177 15 C 0.042 3.958 16 N -0.381 5.381 17 C -0.374 4.374 18 H 0.092 0.908 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.207 1.207 25 C -0.004 4.004 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.048 0.952 47 H 0.210 0.790 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.897 -5.033 17.649 26.342 hybrid contribution 0.968 0.301 -1.221 1.587 sum -17.929 -4.733 16.428 24.773 Atomic orbital electron populations 1.21771 0.95358 1.01946 1.02003 1.21505 0.96314 0.95879 1.02381 1.21623 0.92284 0.98119 1.03279 1.22247 0.98511 0.91470 1.05088 1.21275 0.88234 0.96139 0.85114 1.22224 1.03118 1.00941 0.95076 1.92860 1.89417 1.82883 1.52691 1.21023 0.90597 0.76789 0.81696 1.90704 1.70479 1.47847 1.35165 1.48825 1.08320 1.62740 1.13845 1.22462 0.97246 1.01482 0.81105 1.22462 0.93455 1.02337 0.97030 1.21630 0.95310 0.95922 0.94532 1.21589 1.00751 0.94165 1.01226 1.20686 0.93753 0.96531 0.84780 1.42468 1.26690 1.61441 1.07475 1.19576 1.00460 1.24300 0.93104 0.90750 1.25500 1.01505 1.01511 0.98092 1.69800 1.37778 1.42846 1.11482 0.85254 0.79458 0.78006 0.77277 1.20340 1.22333 1.20719 1.22422 0.80335 1.02036 0.95574 0.92405 0.92339 0.92849 0.92019 0.91483 0.90342 0.91581 0.88897 0.89839 0.89368 0.92313 0.88195 0.88945 0.89128 0.90278 0.91317 0.93026 0.93096 0.93546 0.96415 0.95151 0.79031 0.94077 0.90617 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.26 5.93 30.60 0.18 -1.08 16 3 C -0.12 -1.32 4.74 30.60 0.15 -1.18 16 4 C -0.14 -1.93 4.44 30.60 0.14 -1.80 16 5 C 0.11 2.23 0.90 -11.54 -0.01 2.22 16 6 C -0.16 -2.64 7.71 71.98 0.56 -2.08 16 7 F -0.20 -4.36 14.14 44.97 0.64 -3.73 16 8 C 0.51 13.51 6.91 87.66 0.61 14.12 16 9 O -0.56 -18.44 16.19 -3.05 -0.05 -18.49 16 10 N -0.61 -15.37 3.21 -810.07 -2.60 -17.97 16 11 C 0.10 2.22 5.66 86.53 0.49 2.71 16 12 C -0.11 -3.27 5.52 31.49 0.17 -3.10 16 13 C -0.07 -2.27 0.64 -51.09 -0.03 -2.31 16 14 C -0.12 -4.02 8.28 71.98 0.60 -3.42 16 15 C 0.17 6.49 5.10 86.38 0.44 6.93 16 16 N -0.74 -36.17 5.15 -343.46 -1.77 -37.94 16 17 C -0.24 -13.28 9.99 84.03 0.84 -12.45 16 18 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 20 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 21 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 25 C 0.12 3.24 5.99 86.61 0.52 3.76 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.76 6.56 -2.39 -0.02 0.74 16 32 H 0.07 0.85 7.80 -2.39 -0.02 0.84 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.19 6.14 -2.38 -0.01 1.17 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.18 8.04 -2.39 -0.02 1.16 16 37 H 0.10 1.20 6.75 -2.38 -0.02 1.19 16 38 H 0.09 1.65 7.28 -2.38 -0.02 1.63 16 39 H 0.09 1.97 6.09 -2.39 -0.01 1.95 16 40 H 0.08 2.37 7.85 -2.39 -0.02 2.36 16 41 H 0.07 2.12 7.87 -2.39 -0.02 2.10 16 42 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 43 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.05 1.76 7.11 -2.39 -0.02 1.75 16 45 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.03 1.13 8.13 -2.39 -0.02 1.11 16 47 H 0.38 19.61 6.37 -92.71 -0.59 19.02 16 48 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 49 H 0.08 2.22 7.71 -2.39 -0.02 2.21 16 50 H 0.09 2.24 8.04 -2.39 -0.02 2.22 16 Total: -1.00 -66.18 389.10 4.66 -61.52 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.31 Total: 29.14 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.82 Total: -2.13 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -4.08 Total: -114.12 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.64 Total: -3.73 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -66.18 4.66 -61.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.337 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds