Wall clock time and date at job start Tue Mar 31 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46953 * 304.99470 * 5 4 3 7 7 F 1.39892 * 109.47474 * 64.99853 * 5 4 3 8 8 C 1.50703 * 109.46801 * 184.99876 * 5 4 3 9 9 O 1.21279 * 120.00274 * 10.00521 * 8 5 4 10 10 N 1.34779 * 119.99950 * 189.99399 * 8 5 4 11 11 C 1.48116 * 127.03146 * 359.69123 * 10 8 5 12 12 C 1.54597 * 103.42114 * 219.28162 * 11 10 8 13 13 C 1.54618 * 102.91096 * 322.86830 * 12 11 10 14 14 C 1.53005 * 110.32682 * 262.80513 * 13 12 11 15 15 C 1.52998 * 110.32433 * 140.59264 * 13 12 11 16 16 N 1.46499 * 109.47526 * 64.38285 * 15 13 12 17 17 C 1.36941 * 120.00330 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99400 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00107 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00049 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47089 * 89.99990 * 21 19 17 23 23 H 1.48500 * 109.46985 * 209.99793 * 21 19 17 24 24 H 1.48499 * 109.47301 * 330.00062 * 21 19 17 25 25 C 1.47476 * 127.03555 * 179.97438 * 10 8 5 26 26 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 31 31 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 32 32 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 35 35 H 1.09002 * 109.46957 * 60.00792 * 6 5 4 36 36 H 1.09004 * 109.46951 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47815 * 300.00593 * 6 5 4 38 38 H 1.08997 * 110.66256 * 337.76110 * 11 10 8 39 39 H 1.09000 * 110.66332 * 100.88420 * 11 10 8 40 40 H 1.09005 * 110.83332 * 204.44849 * 12 11 10 41 41 H 1.09005 * 110.73119 * 81.24163 * 12 11 10 42 42 H 1.08995 * 109.47228 * 175.62294 * 14 13 12 43 43 H 1.08995 * 109.47174 * 295.62308 * 14 13 12 44 44 H 1.08997 * 109.46686 * 55.62197 * 14 13 12 45 45 H 1.09000 * 109.46958 * 184.37727 * 15 13 12 46 46 H 1.09001 * 109.47147 * 304.37715 * 15 13 12 47 47 H 0.97000 * 119.99469 * 359.97438 * 16 15 13 48 48 H 0.96992 * 119.99981 * 179.97438 * 20 19 17 49 49 H 1.09001 * 109.91409 * 273.88286 * 25 10 8 50 50 H 1.09004 * 109.91298 * 34.96605 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 3.4705 3.6418 -1.1804 7 9 3.7094 3.5101 1.1966 8 6 5.5820 2.8867 -0.1219 9 8 6.1702 1.8589 -0.3836 10 7 6.2716 4.0305 0.0586 11 6 5.7160 5.3666 0.3748 12 6 6.5848 6.3258 -0.4710 13 6 7.9888 5.6835 -0.3888 14 6 8.8214 6.3633 0.7002 15 6 8.6982 5.7818 -1.7408 16 7 8.9319 7.1904 -2.0684 17 6 9.5570 7.5264 -3.2396 18 1 9.8780 6.7528 -3.9215 19 6 9.7780 8.8611 -3.5503 20 7 10.3793 9.1840 -4.6757 21 14 9.2221 10.1990 -2.3711 22 1 10.3152 10.4986 -1.4116 23 1 8.8859 11.4257 -3.1373 24 1 8.0234 9.7361 -1.6268 25 6 7.7332 4.2091 -0.0241 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9562 -0.8899 33 1 3.9337 0.9284 -0.8891 34 1 3.9329 0.9287 0.8909 35 1 2.3841 3.6405 -1.0913 36 1 3.8342 4.6694 -1.1802 37 1 3.7592 3.1547 -2.1119 38 1 4.6704 5.4295 0.0735 39 1 5.8254 5.5873 1.4366 40 1 6.5920 7.3261 -0.0378 41 1 6.2339 6.3559 -1.5026 42 1 9.7780 5.8505 0.7994 43 1 8.9938 7.4047 0.4287 44 1 8.2853 6.3189 1.6481 45 1 9.6525 5.2576 -1.6893 46 1 8.0754 5.3279 -2.5117 47 1 8.6433 7.8850 -1.4561 48 1 10.5334 10.1167 -4.8929 49 1 8.1902 3.9799 0.9385 50 1 8.1439 3.5565 -0.7946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754699077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:09 Heat of formation + Delta-G solvation = -87.292206 kcal Electronic energy + Delta-G solvation = -27624.388459 eV Core-core repulsion = 23793.777475 eV Total energy + Delta-G solvation = -3830.610984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.16496 -40.31137 -38.43931 -36.40532 -35.06702 -33.33079 -32.64448 -30.75302 -29.67677 -29.07733 -26.92751 -26.17985 -25.38803 -23.44920 -22.43896 -21.93302 -20.93333 -19.52345 -19.00299 -17.80877 -17.24324 -16.61246 -16.31585 -15.92752 -15.37381 -15.31588 -14.59158 -14.34151 -14.25169 -14.04695 -13.76071 -13.62286 -13.47132 -13.21935 -13.16236 -12.84682 -12.80740 -12.53883 -12.45796 -12.41435 -12.06584 -11.97039 -11.63576 -11.56625 -11.49613 -11.39173 -11.33989 -10.96285 -10.90853 -10.82481 -10.71354 -10.44947 -10.37049 -10.05947 -9.81981 -9.59370 -8.92630 -8.81362 -7.25244 -5.78674 -3.14197 2.30290 2.67073 3.32712 3.35396 3.42118 3.92392 4.09957 4.16092 4.44091 4.55427 4.56029 4.60100 4.66672 4.75298 4.82836 4.90996 5.05110 5.12463 5.21201 5.27663 5.29182 5.35906 5.40090 5.43737 5.48972 5.51449 5.56037 5.63128 5.66776 5.69953 5.73135 5.75745 5.80155 5.81383 5.88795 5.96253 6.01826 6.04224 6.14992 6.21977 6.32475 6.43549 6.62712 6.70199 7.34347 7.86349 7.97804 8.40233 9.19245 9.91166 10.11280 11.39875 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.002771 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.705729 B =10103.733127 C =10261.628860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.125 4.125 5 C 0.112 3.888 6 C -0.181 4.181 7 F -0.194 7.194 8 C 0.517 3.483 9 O -0.528 6.528 10 N -0.607 5.607 11 C 0.094 3.906 12 C -0.124 4.124 13 C -0.084 4.084 14 C -0.134 4.134 15 C 0.172 3.828 16 N -0.752 5.752 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.116 3.884 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.030 0.970 46 H 0.028 0.972 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.070 0.930 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.422 -13.743 13.407 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.161 4.161 4 C -0.163 4.163 5 C 0.091 3.909 6 C -0.238 4.238 7 F -0.175 7.175 8 C 0.303 3.697 9 O -0.405 6.405 10 N -0.340 5.340 11 C -0.028 4.028 12 C -0.162 4.162 13 C -0.085 4.085 14 C -0.191 4.191 15 C 0.045 3.955 16 N -0.398 5.398 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.039 -14.392 13.061 26.517 hybrid contribution -0.265 1.260 0.836 1.535 sum -18.304 -13.132 13.897 26.469 Atomic orbital electron populations 1.21774 0.95770 1.01616 1.01851 1.21505 0.95880 0.96481 1.02294 1.21716 0.94011 0.97531 1.02817 1.21985 0.96299 0.92775 1.05213 1.21131 0.91340 0.95283 0.83172 1.22580 1.02722 1.01482 0.97006 1.92891 1.92481 1.84112 1.48019 1.20421 0.89039 0.82559 0.77662 1.90729 1.70194 1.31215 1.48317 1.48769 1.08526 1.08450 1.68210 1.22761 0.98723 0.81310 1.00019 1.22790 0.93946 0.98321 1.01186 1.21716 0.95759 0.93189 0.97813 1.21826 0.99378 1.01449 0.96491 1.20671 0.96592 0.87286 0.90980 1.42698 1.72458 1.01293 1.23382 1.19055 1.29580 0.93023 0.95594 0.89267 1.24668 1.00713 0.96742 0.97062 1.69697 1.47604 1.17121 1.23785 0.86574 0.78506 0.82634 0.80965 1.21057 1.21740 1.20339 1.22187 0.79724 0.96707 1.02003 0.92696 0.92766 0.92743 0.91796 0.91932 0.91373 0.91195 0.88963 0.90288 0.89648 0.90318 0.89790 0.89751 0.90593 0.89864 0.89875 0.92110 0.91639 0.93069 0.95207 0.95416 0.80533 0.93060 0.91197 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.83 5.93 -26.74 -0.16 -0.99 16 3 C -0.12 -0.91 4.64 -26.74 -0.12 -1.03 16 4 C -0.12 -1.18 4.02 -26.73 -0.11 -1.29 16 5 C 0.11 1.19 0.86 -91.77 -0.08 1.11 16 6 C -0.18 -1.58 8.22 37.16 0.31 -1.27 16 7 F -0.19 -2.16 15.09 2.25 0.03 -2.13 16 8 C 0.52 7.10 6.91 -10.98 -0.08 7.03 16 9 O -0.53 -8.80 16.21 5.56 0.09 -8.71 16 10 N -0.61 -7.95 3.29 -169.98 -0.56 -8.51 16 11 C 0.09 1.05 6.01 -2.31 -0.01 1.04 16 12 C -0.12 -1.63 5.72 -25.04 -0.14 -1.78 16 13 C -0.08 -1.20 0.67 -153.12 -0.10 -1.31 16 14 C -0.13 -1.80 8.05 37.16 0.30 -1.50 16 15 C 0.17 3.23 4.85 -4.04 -0.02 3.21 16 16 N -0.75 -17.15 4.92 -59.91 -0.29 -17.45 16 17 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 20 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 21 Si 0.88 21.60 27.73 -169.99 -4.71 16.88 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 25 C 0.12 1.59 6.28 -2.98 -0.02 1.57 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 33 H 0.09 0.91 7.81 -51.93 -0.41 0.51 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.59 6.35 -51.93 -0.33 0.26 16 36 H 0.08 0.70 5.65 -51.93 -0.29 0.41 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.83 4.80 -51.93 -0.25 0.58 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 41 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.99 6.75 -51.93 -0.35 0.64 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.55 8.11 -51.93 -0.42 0.13 16 47 H 0.36 7.93 4.04 -40.82 -0.16 7.76 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 50 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -32.30 384.71 -7.80 -40.11 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.81 Total: 5.06 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.12 Total: -2.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.08 Total: -54.36 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.03 Total: -2.13 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.30 -7.80 -40.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.186 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds