Wall clock time and date at job start Tue Mar 31 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46953 * 304.99470 * 5 4 3 7 7 F 1.39892 * 109.47474 * 64.99853 * 5 4 3 8 8 C 1.50703 * 109.46801 * 184.99876 * 5 4 3 9 9 O 1.21279 * 120.00274 * 10.00521 * 8 5 4 10 10 N 1.34779 * 119.99950 * 189.99399 * 8 5 4 11 11 C 1.48116 * 127.03146 * 359.69123 * 10 8 5 12 12 C 1.54597 * 103.42114 * 219.28162 * 11 10 8 13 13 C 1.54618 * 102.91096 * 322.86830 * 12 11 10 14 14 C 1.53005 * 110.32682 * 262.80513 * 13 12 11 15 15 C 1.52998 * 110.32433 * 140.59264 * 13 12 11 16 16 N 1.46499 * 109.47526 * 64.38285 * 15 13 12 17 17 C 1.36941 * 120.00330 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99400 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00107 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00049 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47089 * 89.99990 * 21 19 17 23 23 H 1.48500 * 109.46985 * 209.99793 * 21 19 17 24 24 H 1.48499 * 109.47301 * 330.00062 * 21 19 17 25 25 C 1.47476 * 127.03555 * 179.97438 * 10 8 5 26 26 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 31 31 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 32 32 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 35 35 H 1.09002 * 109.46957 * 60.00792 * 6 5 4 36 36 H 1.09004 * 109.46951 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47815 * 300.00593 * 6 5 4 38 38 H 1.08997 * 110.66256 * 337.76110 * 11 10 8 39 39 H 1.09000 * 110.66332 * 100.88420 * 11 10 8 40 40 H 1.09005 * 110.83332 * 204.44849 * 12 11 10 41 41 H 1.09005 * 110.73119 * 81.24163 * 12 11 10 42 42 H 1.08995 * 109.47228 * 175.62294 * 14 13 12 43 43 H 1.08995 * 109.47174 * 295.62308 * 14 13 12 44 44 H 1.08997 * 109.46686 * 55.62197 * 14 13 12 45 45 H 1.09000 * 109.46958 * 184.37727 * 15 13 12 46 46 H 1.09001 * 109.47147 * 304.37715 * 15 13 12 47 47 H 0.97000 * 119.99469 * 359.97438 * 16 15 13 48 48 H 0.96992 * 119.99981 * 179.97438 * 20 19 17 49 49 H 1.09001 * 109.91409 * 273.88286 * 25 10 8 50 50 H 1.09004 * 109.91298 * 34.96605 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 3.4705 3.6418 -1.1804 7 9 3.7094 3.5101 1.1966 8 6 5.5820 2.8867 -0.1219 9 8 6.1702 1.8589 -0.3836 10 7 6.2716 4.0305 0.0586 11 6 5.7160 5.3666 0.3748 12 6 6.5848 6.3258 -0.4710 13 6 7.9888 5.6835 -0.3888 14 6 8.8214 6.3633 0.7002 15 6 8.6982 5.7818 -1.7408 16 7 8.9319 7.1904 -2.0684 17 6 9.5570 7.5264 -3.2396 18 1 9.8780 6.7528 -3.9215 19 6 9.7780 8.8611 -3.5503 20 7 10.3793 9.1840 -4.6757 21 14 9.2221 10.1990 -2.3711 22 1 10.3152 10.4986 -1.4116 23 1 8.8859 11.4257 -3.1373 24 1 8.0234 9.7361 -1.6268 25 6 7.7332 4.2091 -0.0241 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9562 -0.8899 33 1 3.9337 0.9284 -0.8891 34 1 3.9329 0.9287 0.8909 35 1 2.3841 3.6405 -1.0913 36 1 3.8342 4.6694 -1.1802 37 1 3.7592 3.1547 -2.1119 38 1 4.6704 5.4295 0.0735 39 1 5.8254 5.5873 1.4366 40 1 6.5920 7.3261 -0.0378 41 1 6.2339 6.3559 -1.5026 42 1 9.7780 5.8505 0.7994 43 1 8.9938 7.4047 0.4287 44 1 8.2853 6.3189 1.6481 45 1 9.6525 5.2576 -1.6893 46 1 8.0754 5.3279 -2.5117 47 1 8.6433 7.8850 -1.4561 48 1 10.5334 10.1167 -4.8929 49 1 8.1902 3.9799 0.9385 50 1 8.1439 3.5565 -0.7946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754699077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:08 Heat of formation + Delta-G solvation = -106.357709 kcal Electronic energy + Delta-G solvation = -27625.215201 eV Core-core repulsion = 23793.777475 eV Total energy + Delta-G solvation = -3831.437726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.01855 -41.39726 -39.59011 -37.10873 -36.66065 -34.55364 -33.80856 -32.58711 -30.72000 -29.78382 -28.02065 -27.62881 -26.30696 -24.60535 -23.87694 -22.99438 -21.62180 -20.59461 -20.30562 -19.53464 -18.39869 -17.60933 -17.20849 -16.83728 -16.51886 -16.24887 -16.12405 -15.71701 -15.34774 -15.19059 -15.08212 -14.60763 -14.46354 -14.31607 -14.11890 -13.97614 -13.77902 -13.62768 -13.50097 -13.39781 -13.17993 -13.03921 -12.89238 -12.83740 -12.63103 -12.26192 -12.17390 -12.13191 -11.98351 -11.97458 -11.73350 -11.64010 -11.53909 -11.43704 -11.39759 -10.98120 -10.83812 -9.88167 -9.30436 -8.02380 -5.36498 1.25489 1.37283 1.42862 1.50069 1.67640 2.49133 2.99470 3.27708 3.31127 3.37827 3.42892 3.54668 3.66631 3.73589 3.95439 4.09299 4.11501 4.15051 4.23603 4.28716 4.33742 4.45230 4.46696 4.59325 4.66622 4.67383 4.73609 4.77008 4.80223 4.84348 4.87956 4.92995 4.94491 5.01978 5.05148 5.09495 5.13479 5.17631 5.19438 5.28525 5.31678 5.39630 5.45338 5.48745 5.74948 6.20728 6.31894 6.80818 7.08077 7.82118 8.04926 9.19387 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.002771 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.705729 B =10103.733127 C =10261.628860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.122 4.122 5 C 0.118 3.882 6 C -0.179 4.179 7 F -0.194 7.194 8 C 0.508 3.492 9 O -0.566 6.566 10 N -0.609 5.609 11 C 0.100 3.900 12 C -0.123 4.123 13 C -0.074 4.074 14 C -0.132 4.132 15 C 0.171 3.829 16 N -0.747 5.747 17 C -0.236 4.236 18 H 0.049 0.951 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.242 1.242 25 C 0.119 3.881 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.021 0.979 46 H 0.013 0.987 47 H 0.370 0.630 48 H 0.258 0.742 49 H 0.086 0.914 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.910 -12.957 16.092 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.160 4.160 5 C 0.097 3.903 6 C -0.236 4.236 7 F -0.174 7.174 8 C 0.296 3.704 9 O -0.446 6.446 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.162 4.162 13 C -0.075 4.075 14 C -0.189 4.189 15 C 0.044 3.956 16 N -0.394 5.394 17 C -0.367 4.367 18 H 0.067 0.933 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.166 1.166 25 C -0.004 4.004 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.039 0.961 46 H 0.031 0.969 47 H 0.205 0.795 48 H 0.067 0.933 49 H 0.104 0.896 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.559 -13.627 15.790 29.286 hybrid contribution 0.581 0.894 -0.074 1.069 sum -19.978 -12.732 15.716 28.429 Atomic orbital electron populations 1.21765 0.94933 1.02028 1.02164 1.21511 0.96587 0.96055 1.02119 1.21687 0.92178 0.98101 1.03414 1.21970 0.97817 0.91915 1.04320 1.21123 0.89088 0.96252 0.83844 1.22613 1.04079 1.01008 0.95909 1.92891 1.92247 1.84141 1.48159 1.21091 0.90413 0.82096 0.76834 1.90707 1.71239 1.32581 1.50026 1.48895 1.08297 1.09223 1.67688 1.22885 0.99101 0.79339 1.00809 1.22779 0.93066 0.99498 1.00822 1.21565 0.96413 0.94193 0.95361 1.21820 0.99597 1.00206 0.97275 1.20752 0.96437 0.84867 0.93511 1.42581 1.71803 1.03184 1.21844 1.18993 1.28973 0.92261 0.96470 0.93284 1.25566 1.01392 0.99553 0.99185 1.69900 1.49720 1.17570 1.26438 0.85402 0.79407 0.78404 0.78590 1.20258 1.22399 1.16600 1.22091 0.80568 0.95648 1.02126 0.92279 0.92377 0.92511 0.91931 0.92264 0.91197 0.90035 0.89789 0.91357 0.87302 0.90280 0.89991 0.88085 0.88435 0.88434 0.91634 0.92214 0.92930 0.89915 0.96148 0.96886 0.79529 0.93331 0.89570 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.13 -1.50 5.93 30.59 0.18 -1.32 16 3 C -0.12 -1.49 4.64 30.59 0.14 -1.35 16 4 C -0.12 -2.18 4.02 30.59 0.12 -2.06 16 5 C 0.12 2.31 0.86 -11.54 -0.01 2.30 16 6 C -0.18 -2.71 8.22 71.98 0.59 -2.12 16 7 F -0.19 -3.78 15.09 44.97 0.68 -3.10 16 8 C 0.51 13.51 6.91 87.66 0.61 14.12 16 9 O -0.57 -19.05 16.21 -3.02 -0.05 -19.09 16 10 N -0.61 -14.93 3.29 -810.07 -2.67 -17.60 16 11 C 0.10 1.90 6.01 86.61 0.52 2.42 16 12 C -0.12 -2.90 5.72 31.69 0.18 -2.72 16 13 C -0.07 -2.01 0.67 -51.28 -0.03 -2.04 16 14 C -0.13 -3.15 8.05 71.98 0.58 -2.57 16 15 C 0.17 6.45 4.85 86.38 0.42 6.87 16 16 N -0.75 -33.76 4.92 -343.46 -1.69 -35.45 16 17 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 18 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.99 -63.30 13.97 21.65 0.30 -63.00 16 21 Si 0.96 43.97 27.73 68.60 1.90 45.88 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 25 C 0.12 3.10 6.28 86.54 0.54 3.64 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.89 7.93 -2.39 -0.02 0.87 16 32 H 0.08 0.86 6.35 -2.39 -0.02 0.84 16 33 H 0.08 1.64 7.81 -2.39 -0.02 1.62 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.15 6.35 -2.39 -0.02 1.13 16 36 H 0.08 1.20 5.65 -2.38 -0.01 1.19 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.62 4.80 -2.39 -0.01 1.61 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 2.06 7.85 -2.38 -0.02 2.04 16 41 H 0.06 1.79 7.84 -2.38 -0.02 1.77 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.41 6.75 -2.39 -0.02 1.40 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.01 0.53 8.11 -2.39 -0.02 0.51 16 47 H 0.37 15.42 4.04 -92.71 -0.37 15.04 16 48 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 49 H 0.09 2.00 7.68 -2.39 -0.02 1.98 16 50 H 0.06 1.86 7.60 -2.39 -0.02 1.84 16 Total: -1.00 -72.00 384.71 4.86 -67.14 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.48 Total: 26.82 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.90 Total: -1.60 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.06 Total: -116.05 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.68 Total: -3.10 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.88 kcal Total: -72.00 4.86 -67.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.214 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds