Wall clock time and date at job start Tue Mar 31 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47021 * 305.00408 * 5 4 3 7 7 F 1.39901 * 109.46680 * 64.99909 * 5 4 3 8 8 C 1.50699 * 109.47053 * 184.99965 * 5 4 3 9 9 O 1.21284 * 119.99857 * 10.00725 * 8 5 4 10 10 N 1.34779 * 119.99895 * 190.00052 * 8 5 4 11 11 C 1.47025 * 125.64796 * 0.02750 * 10 8 5 12 12 C 1.54322 * 107.27140 * 181.02277 * 11 10 8 13 13 C 1.55160 * 102.94087 * 22.19310 * 12 11 10 14 14 C 1.52992 * 111.00560 * 82.61416 * 13 12 11 15 15 C 1.53004 * 111.00331 * 206.42681 * 13 12 11 16 16 N 1.46504 * 109.46768 * 298.54539 * 15 13 12 17 17 C 1.36936 * 119.99779 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00256 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00143 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99632 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00365 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47576 * 89.99202 * 21 19 17 23 23 H 1.48492 * 109.46985 * 209.99830 * 21 19 17 24 24 H 1.48510 * 109.46916 * 329.99354 * 21 19 17 25 25 C 1.47415 * 125.64731 * 179.71863 * 10 8 5 26 26 H 1.08998 * 109.47533 * 299.99495 * 1 2 3 27 27 H 1.09001 * 109.47502 * 60.00153 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00325 * 2 1 3 30 30 H 1.08992 * 109.47303 * 120.00621 * 2 1 3 31 31 H 1.09001 * 109.46993 * 59.99869 * 3 2 1 32 32 H 1.09004 * 109.47298 * 300.00283 * 3 2 1 33 33 H 1.09001 * 109.46832 * 60.00325 * 4 3 2 34 34 H 1.08993 * 109.47194 * 299.99846 * 4 3 2 35 35 H 1.08992 * 109.47518 * 59.99913 * 6 5 4 36 36 H 1.09002 * 109.46905 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47446 * 299.99458 * 6 5 4 38 38 H 1.09003 * 109.88064 * 300.44278 * 11 10 8 39 39 H 1.08996 * 109.88002 * 61.44714 * 11 10 8 40 40 H 1.08994 * 110.72318 * 140.55837 * 12 11 10 41 41 H 1.08995 * 110.71869 * 263.65372 * 12 11 10 42 42 H 1.08997 * 109.47356 * 61.45120 * 14 13 12 43 43 H 1.09001 * 109.47668 * 181.45357 * 14 13 12 44 44 H 1.09005 * 109.46877 * 301.44656 * 14 13 12 45 45 H 1.09001 * 109.47428 * 58.54303 * 15 13 12 46 46 H 1.08993 * 109.47183 * 178.54653 * 15 13 12 47 47 H 0.96997 * 120.00398 * 359.97438 * 16 15 13 48 48 H 0.97004 * 120.00049 * 179.97438 * 20 19 17 49 49 H 1.08999 * 110.36685 * 274.74666 * 25 10 8 50 50 H 1.09006 * 110.36849 * 37.07282 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 3.4703 3.6420 -1.1803 7 9 3.7093 3.5101 1.1968 8 6 5.5819 2.8868 -0.1219 9 8 6.1701 1.8590 -0.3837 10 7 6.2715 4.0307 0.0587 11 6 5.6879 5.3415 0.3792 12 6 6.8510 6.3521 0.4660 13 6 7.9676 5.6690 -0.3671 14 6 7.7756 5.9326 -1.8619 15 6 9.3531 6.1260 0.0938 16 7 9.4798 7.5726 -0.1006 17 6 10.6420 8.2103 0.2426 18 1 11.4653 7.6469 0.6563 19 6 10.7620 9.5810 0.0589 20 7 9.7588 10.2675 -0.4457 21 14 12.3476 10.4508 0.5264 22 1 13.2671 10.4646 -0.6396 23 1 12.0449 11.8461 0.9347 24 1 12.9914 9.7332 1.6560 25 6 7.7362 4.1734 -0.0262 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8898 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9285 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 2.3840 3.6407 -1.0912 36 1 3.8333 4.6698 -1.1796 37 1 3.7591 3.1550 -2.1118 38 1 4.9945 5.6408 -0.4068 39 1 5.1655 5.2911 1.3345 40 1 6.5671 7.3060 0.0216 41 1 7.1667 6.4888 1.5002 42 1 7.8331 7.0043 -2.0522 43 1 8.5569 5.4213 -2.4243 44 1 6.8001 5.5599 -2.1742 45 1 9.4813 5.8888 1.1500 46 1 10.1176 5.6127 -0.4892 47 1 8.7409 8.0785 -0.4731 48 1 9.8425 11.2254 -0.5737 49 1 8.1977 3.9239 0.9293 50 1 8.1340 3.5384 -0.8179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754699078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:11 Heat of formation + Delta-G solvation = -93.950386 kcal Electronic energy + Delta-G solvation = -27453.731366 eV Core-core repulsion = 23622.831662 eV Total energy + Delta-G solvation = -3830.899704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.12016 -40.26243 -38.30631 -36.38520 -34.88819 -33.30053 -32.57549 -30.33628 -29.51041 -29.03108 -26.91393 -26.01283 -25.25658 -23.37078 -22.53691 -22.05131 -20.87315 -19.49017 -18.85413 -17.48145 -17.02850 -16.43271 -16.32013 -15.90247 -15.43280 -15.24838 -14.60612 -14.24295 -14.09160 -13.97386 -13.77086 -13.59661 -13.43110 -13.20637 -13.06722 -12.76833 -12.66347 -12.53957 -12.43409 -12.35708 -12.01085 -11.72288 -11.65147 -11.53491 -11.37916 -11.30798 -11.05180 -10.93275 -10.83245 -10.81338 -10.57327 -10.36063 -10.26711 -10.00181 -9.79331 -9.65940 -8.89470 -8.66112 -6.93725 -5.78828 -3.06843 2.32786 2.75910 3.42660 3.48231 3.49456 3.97666 4.12534 4.18691 4.46298 4.53527 4.67556 4.67942 4.73002 4.79447 4.84046 5.02797 5.06267 5.15590 5.26829 5.34333 5.37607 5.40590 5.44214 5.49165 5.53293 5.57141 5.65656 5.69695 5.71065 5.78182 5.83530 5.85489 5.95845 5.97189 6.00075 6.03914 6.10781 6.24111 6.26861 6.37516 6.47163 6.60710 6.72345 6.81349 7.39249 7.68991 7.90440 8.40358 9.52056 10.08899 10.44199 11.44087 Molecular weight = 314.21amu Principal moments of inertia in cm(-1) A = 0.040101 B = 0.002404 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.063238 B =11643.023198 C =11863.101998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.124 4.124 5 C 0.112 3.888 6 C -0.180 4.180 7 F -0.193 7.193 8 C 0.513 3.487 9 O -0.531 6.531 10 N -0.602 5.602 11 C 0.092 3.908 12 C -0.116 4.116 13 C -0.078 4.078 14 C -0.128 4.128 15 C 0.169 3.831 16 N -0.728 5.728 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.115 3.885 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.072 0.928 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 -16.779 -0.650 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.161 4.161 4 C -0.162 4.162 5 C 0.090 3.910 6 C -0.237 4.237 7 F -0.174 7.174 8 C 0.299 3.701 9 O -0.408 6.408 10 N -0.334 5.334 11 C -0.030 4.030 12 C -0.154 4.154 13 C -0.079 4.079 14 C -0.185 4.185 15 C 0.041 3.959 16 N -0.372 5.372 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.007 4.007 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.863 -17.338 -0.699 24.904 hybrid contribution 0.657 0.881 0.272 1.132 sum -17.206 -16.457 -0.427 23.813 Atomic orbital electron populations 1.21772 0.95773 1.01600 1.01857 1.21504 0.95874 0.96505 1.02271 1.21718 0.94049 0.97490 1.02818 1.21979 0.96257 0.92856 1.05153 1.21123 0.91481 0.95158 0.83198 1.22544 1.02721 1.01578 0.96878 1.92887 1.92423 1.84119 1.47944 1.20440 0.89089 0.82724 0.77895 1.90719 1.70265 1.31254 1.48568 1.48481 1.08450 1.08428 1.68047 1.22406 0.97280 0.82350 1.01005 1.22683 0.93224 0.97745 1.01699 1.21982 0.96998 0.92588 0.96327 1.21662 1.00341 1.02958 0.93582 1.20549 0.91140 0.87082 0.97120 1.42301 1.16765 1.01307 1.76875 1.19224 0.92568 0.90617 1.34512 0.91210 1.24719 0.97800 0.96452 1.01996 1.69649 1.30781 1.06987 1.50834 0.86191 0.82982 0.79010 0.78013 1.21772 1.21812 1.20796 1.22424 0.79349 0.96995 1.01953 0.92699 0.92737 0.92783 0.91860 0.91907 0.91323 0.91255 0.89074 0.90278 0.89698 0.90343 0.90049 0.91245 0.90616 0.89325 0.90016 0.91057 0.92626 0.93718 0.96027 0.95977 0.78106 0.93543 0.90969 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.91 4.64 -26.73 -0.12 -1.04 16 4 C -0.12 -1.18 4.02 -26.73 -0.11 -1.29 16 5 C 0.11 1.20 0.90 -91.77 -0.08 1.12 16 6 C -0.18 -1.52 8.33 37.16 0.31 -1.21 16 7 F -0.19 -2.26 14.66 2.25 0.03 -2.23 16 8 C 0.51 7.11 6.88 -10.98 -0.08 7.04 16 9 O -0.53 -8.83 16.13 5.55 0.09 -8.74 16 10 N -0.60 -8.17 3.31 -170.38 -0.56 -8.74 16 11 C 0.09 1.12 5.47 -3.06 -0.02 1.11 16 12 C -0.12 -1.66 5.38 -24.90 -0.13 -1.79 16 13 C -0.08 -1.20 0.62 -152.24 -0.09 -1.30 16 14 C -0.13 -1.95 8.41 37.15 0.31 -1.63 16 15 C 0.17 3.26 5.23 -4.04 -0.02 3.24 16 16 N -0.73 -17.53 5.17 -59.91 -0.31 -17.84 16 17 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.12 1.66 5.85 -2.41 -0.01 1.65 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 32 H 0.07 0.45 6.35 -51.93 -0.33 0.12 16 33 H 0.09 0.89 7.81 -51.93 -0.41 0.48 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 36 H 0.08 0.68 5.44 -51.93 -0.28 0.39 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.75 5.78 -51.93 -0.30 0.45 16 39 H 0.08 0.90 7.08 -51.93 -0.37 0.53 16 40 H 0.09 1.32 7.95 -51.93 -0.41 0.91 16 41 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 42 H 0.07 1.22 7.19 -51.93 -0.37 0.84 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 45 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.38 9.60 6.37 -40.82 -0.26 9.34 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 49 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 50 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -30.78 387.95 -8.19 -38.97 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.90 Total: 5.13 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.08 Total: -2.75 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.15 Total: -53.36 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.23 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.78 -8.19 -38.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.982 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds