Wall clock time and date at job start Tue Mar 31 2020 10:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47164 * 2 1 4 4 C 1.42901 * 114.00018 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46775 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47430 * 64.99683 * 5 4 3 7 7 C 1.42901 * 114.00050 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47446 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99486 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99983 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.21137 * 36.92881 * 11 10 8 13 13 C 1.50121 * 110.24950 * 159.01845 * 11 10 8 14 14 C 1.54846 * 110.81557 * 216.65312 * 13 11 10 15 15 C 1.54409 * 110.06959 * 321.07686 * 14 13 11 16 16 N 1.43431 * 116.38784 * 318.64859 * 15 14 13 17 17 C 1.36934 * 120.53818 * 271.73183 * 16 15 14 18 18 H 1.08008 * 120.00113 * 336.78917 * 17 16 15 19 19 C 1.38810 * 120.00261 * 156.79420 * 17 16 15 20 20 N 1.31616 * 120.00171 * 339.99783 * 19 17 16 21 21 Si 1.86800 * 120.00079 * 159.72699 * 19 17 16 22 22 H 1.48502 * 109.47146 * 89.99941 * 21 19 17 23 23 H 1.48504 * 109.46971 * 209.99762 * 21 19 17 24 24 H 1.48506 * 109.47232 * 329.99807 * 21 19 17 25 25 C 1.50168 * 118.92685 * 91.45779 * 16 15 14 26 26 C 1.46246 * 107.53307 * 289.83827 * 25 16 15 27 27 H 1.08998 * 109.47503 * 299.99545 * 1 2 3 28 28 H 1.08996 * 109.47337 * 60.00591 * 1 2 3 29 29 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47000 * 239.99883 * 2 1 3 31 31 H 1.09004 * 109.47154 * 120.00222 * 2 1 3 32 32 H 1.08992 * 109.47129 * 60.00272 * 4 3 2 33 33 H 1.09000 * 109.46980 * 299.99575 * 4 3 2 34 34 H 1.09004 * 109.47106 * 304.99346 * 5 4 3 35 35 H 1.08998 * 109.46841 * 185.00019 * 5 4 3 36 36 H 1.09002 * 109.47511 * 59.99761 * 7 6 5 37 37 H 1.09007 * 109.46687 * 299.99943 * 7 6 5 38 38 H 0.96993 * 120.00376 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.20848 * 336.99791 * 13 11 10 40 40 H 1.09003 * 109.20767 * 96.31084 * 13 11 10 41 41 H 1.09002 * 109.35766 * 81.33812 * 14 13 11 42 42 H 1.08990 * 109.36139 * 200.92674 * 14 13 11 43 43 H 1.09001 * 107.88395 * 196.93267 * 15 14 13 44 44 H 1.09000 * 108.09918 * 80.53272 * 15 14 13 45 45 H 0.96997 * 120.00500 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.84712 * 49.34594 * 25 16 15 47 47 H 1.08999 * 109.84629 * 170.26886 * 25 16 15 48 48 H 1.09000 * 108.51960 * 179.64883 * 26 25 16 49 49 H 1.08992 * 108.52050 * 297.16948 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3985 3.5448 1.2216 7 6 3.7192 4.9335 1.3243 8 6 3.2260 5.4668 2.6446 9 8 2.6556 4.7302 3.4211 10 7 3.4179 6.7625 2.9622 11 6 2.9380 7.2810 4.2456 12 1 3.0639 6.5304 5.0258 13 6 3.6746 8.5384 4.6061 14 6 3.9263 8.6102 6.1323 15 6 2.6961 8.0770 6.8980 16 7 1.4120 8.4701 6.3941 17 6 0.8242 9.6320 6.8179 18 1 1.1043 10.0638 7.7675 19 6 -0.1318 10.2548 6.0273 20 7 -0.1999 9.9842 4.7411 21 14 -1.3265 11.4713 6.7904 22 1 -0.7471 12.8374 6.7315 23 1 -2.6075 11.4441 6.0397 24 1 -1.5746 11.0995 8.2066 25 6 0.7254 7.5901 5.3895 26 6 1.4719 7.6873 4.1356 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8332 0.9768 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 3.3491 3.4419 -0.8413 35 1 4.9080 3.0255 -0.0899 36 1 3.2405 5.4782 0.5104 37 1 4.7998 5.0624 1.2616 38 1 3.8738 7.3517 2.3410 39 1 4.6310 8.5561 4.0836 40 1 3.0831 9.4010 4.2993 41 1 4.7991 8.0074 6.3833 42 1 4.1099 9.6453 6.4199 43 1 2.7731 8.4141 7.9317 44 1 2.7425 6.9880 6.8971 45 1 -0.8677 10.4197 4.1885 46 1 0.7248 6.5583 5.7407 47 1 -0.2991 7.9302 5.2386 48 1 0.9900 7.0485 3.3954 49 1 1.4236 8.7175 3.7829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755033975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:53 Heat of formation + Delta-G solvation = -100.524894 kcal Electronic energy + Delta-G solvation = -27127.058898 eV Core-core repulsion = 23283.501313 eV Total energy + Delta-G solvation = -3843.557586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.72099 -38.59044 -37.76494 -36.91544 -34.48081 -32.50843 -32.08074 -31.02474 -30.49282 -29.64061 -27.44392 -25.85850 -23.66458 -23.05784 -22.98162 -22.77077 -20.35871 -19.92294 -19.11730 -17.35767 -17.10893 -16.79306 -16.60159 -15.98720 -15.94790 -15.34251 -14.92420 -14.78631 -14.26473 -13.90398 -13.82145 -13.70241 -13.49055 -13.23296 -12.85638 -12.74513 -12.43246 -12.22505 -11.92271 -11.74553 -11.66640 -11.47087 -11.36506 -11.18362 -11.15688 -10.74228 -10.70449 -10.30382 -10.14979 -9.92503 -9.85485 -9.79682 -9.75969 -9.48209 -9.34993 -9.19212 -8.59557 -8.26552 -6.66533 -5.74296 -3.12480 2.92962 2.99241 3.40610 3.44357 3.48550 3.51701 4.01732 4.55405 4.70935 4.82801 4.89224 4.92566 5.02166 5.06121 5.11695 5.14901 5.16927 5.20600 5.38216 5.43551 5.46039 5.54790 5.66522 5.72284 5.72722 5.80293 5.95866 6.16770 6.32029 6.36422 6.52173 6.59595 6.71971 6.87596 6.90799 6.94886 6.98449 7.04072 7.13664 7.18534 7.35702 7.65956 7.79057 7.89513 8.02078 8.47912 8.60387 9.24088 9.92441 10.46256 11.32908 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.002685 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.944757 B =10424.920556 C =11320.591222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.353 6.353 7 C 0.044 3.956 8 C 0.509 3.491 9 O -0.517 6.517 10 N -0.720 5.720 11 C 0.148 3.852 12 H 0.083 0.917 13 C -0.112 4.112 14 C -0.140 4.140 15 C 0.154 3.846 16 N -0.588 5.588 17 C -0.246 4.246 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.169 3.831 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.393 0.607 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.252 0.748 46 H 0.010 0.990 47 H 0.091 0.909 48 H 0.030 0.970 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 -14.011 -12.684 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.271 6.271 7 C -0.036 4.036 8 C 0.293 3.707 9 O -0.392 6.392 10 N -0.372 5.372 11 C 0.045 3.955 12 H 0.101 0.899 13 C -0.150 4.150 14 C -0.181 4.181 15 C 0.024 3.976 16 N -0.309 5.309 17 C -0.375 4.375 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.729 3.271 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.045 3.955 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.028 0.972 47 H 0.109 0.891 48 H 0.048 0.952 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.577 -14.450 -12.055 21.115 hybrid contribution 0.071 1.021 -0.457 1.120 sum 9.649 -13.429 -12.512 20.736 Atomic orbital electron populations 1.21740 0.93654 1.02090 1.03490 1.22452 0.95860 0.83849 0.99751 1.88009 1.20289 1.26181 1.95333 1.22473 0.82506 0.95376 1.00757 1.22575 0.98226 0.92924 0.87828 1.88106 1.80753 1.20898 1.37318 1.22245 1.00138 0.84364 0.96889 1.20091 0.80223 0.82534 0.87838 1.90737 1.40486 1.57162 1.50800 1.46178 1.60157 1.09565 1.21348 1.20489 0.96168 0.95514 0.83279 0.89901 1.21696 0.98381 0.97851 0.97055 1.22755 0.99391 1.00916 0.95067 1.20335 0.85504 0.96208 0.95523 1.44292 1.13845 1.22804 1.50002 1.19198 1.18141 1.00164 1.00029 0.91564 1.24878 1.01635 0.98409 0.94796 1.69966 1.35799 1.45504 1.03305 0.86357 0.81118 0.80910 0.78727 1.21704 1.21703 1.20688 1.20098 0.98363 0.89955 0.87094 1.21323 0.92285 1.03557 1.00024 0.91431 0.91933 0.91227 0.93741 0.93354 0.91897 0.92300 0.92271 0.91722 0.90434 0.90746 0.77363 0.94124 0.90073 0.93679 0.92659 0.94939 0.95267 0.93835 0.97198 0.89110 0.95154 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.54 6.66 37.16 0.25 0.78 16 3 O -0.38 -4.73 10.31 -40.09 -0.41 -5.14 16 4 C 0.07 0.63 6.32 37.16 0.23 0.86 16 5 C 0.06 0.60 6.32 37.16 0.23 0.83 16 6 O -0.35 -5.09 9.84 -59.73 -0.59 -5.68 16 7 C 0.04 0.53 6.42 36.00 0.23 0.77 16 8 C 0.51 8.57 7.76 -10.99 -0.09 8.48 16 9 O -0.52 -11.36 16.22 -14.36 -0.23 -11.59 16 10 N -0.72 -11.23 5.01 -55.44 -0.28 -11.51 16 11 C 0.15 2.83 2.17 -69.60 -0.15 2.68 16 12 H 0.08 1.76 5.83 -51.93 -0.30 1.45 16 13 C -0.11 -2.03 5.30 -27.19 -0.14 -2.18 16 14 C -0.14 -2.60 6.40 -25.02 -0.16 -2.76 16 15 C 0.15 3.29 5.13 -4.93 -0.03 3.27 16 16 N -0.59 -14.68 2.61 -175.40 -0.46 -15.13 16 17 C -0.25 -6.64 9.62 -15.06 -0.14 -6.79 16 18 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 19 C 0.00 0.01 4.90 -17.43 -0.09 -0.07 16 20 N -0.90 -24.89 9.44 55.49 0.52 -24.36 16 21 Si 0.90 21.60 29.60 -169.99 -5.03 16.57 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.17 4.17 5.25 -5.20 -0.03 4.15 16 26 C -0.13 -2.97 4.73 -30.18 -0.14 -3.11 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.39 4.73 8.45 -40.82 -0.34 4.39 16 39 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 40 H 0.08 1.72 6.83 -51.93 -0.35 1.37 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.69 7.99 -51.93 -0.41 0.27 16 44 H 0.03 0.61 6.90 -51.93 -0.36 0.25 16 45 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 47 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 48 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 49 H 0.10 2.50 5.31 -51.93 -0.28 2.23 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -33.32 384.83 -8.96 -42.28 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.65 Total: 2.82 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 0.36 Total: 5.96 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.21 Total: -51.01 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.23 Total: -22.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.32 -8.96 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755033975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.248 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds