Wall clock time and date at job start Tue Mar 31 2020 10:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47164 * 2 1 4 4 C 1.42901 * 114.00018 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46775 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47430 * 64.99683 * 5 4 3 7 7 C 1.42901 * 114.00050 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47446 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99486 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99983 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.21137 * 36.92881 * 11 10 8 13 13 C 1.50121 * 110.24950 * 159.01845 * 11 10 8 14 14 C 1.54846 * 110.81557 * 216.65312 * 13 11 10 15 15 C 1.54409 * 110.06959 * 321.07686 * 14 13 11 16 16 N 1.43431 * 116.38784 * 318.64859 * 15 14 13 17 17 C 1.36934 * 120.53818 * 271.73183 * 16 15 14 18 18 H 1.08008 * 120.00113 * 336.78917 * 17 16 15 19 19 C 1.38810 * 120.00261 * 156.79420 * 17 16 15 20 20 N 1.31616 * 120.00171 * 339.99783 * 19 17 16 21 21 Si 1.86800 * 120.00079 * 159.72699 * 19 17 16 22 22 H 1.48502 * 109.47146 * 89.99941 * 21 19 17 23 23 H 1.48504 * 109.46971 * 209.99762 * 21 19 17 24 24 H 1.48506 * 109.47232 * 329.99807 * 21 19 17 25 25 C 1.50168 * 118.92685 * 91.45779 * 16 15 14 26 26 C 1.46246 * 107.53307 * 289.83827 * 25 16 15 27 27 H 1.08998 * 109.47503 * 299.99545 * 1 2 3 28 28 H 1.08996 * 109.47337 * 60.00591 * 1 2 3 29 29 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47000 * 239.99883 * 2 1 3 31 31 H 1.09004 * 109.47154 * 120.00222 * 2 1 3 32 32 H 1.08992 * 109.47129 * 60.00272 * 4 3 2 33 33 H 1.09000 * 109.46980 * 299.99575 * 4 3 2 34 34 H 1.09004 * 109.47106 * 304.99346 * 5 4 3 35 35 H 1.08998 * 109.46841 * 185.00019 * 5 4 3 36 36 H 1.09002 * 109.47511 * 59.99761 * 7 6 5 37 37 H 1.09007 * 109.46687 * 299.99943 * 7 6 5 38 38 H 0.96993 * 120.00376 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.20848 * 336.99791 * 13 11 10 40 40 H 1.09003 * 109.20767 * 96.31084 * 13 11 10 41 41 H 1.09002 * 109.35766 * 81.33812 * 14 13 11 42 42 H 1.08990 * 109.36139 * 200.92674 * 14 13 11 43 43 H 1.09001 * 107.88395 * 196.93267 * 15 14 13 44 44 H 1.09000 * 108.09918 * 80.53272 * 15 14 13 45 45 H 0.96997 * 120.00500 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.84712 * 49.34594 * 25 16 15 47 47 H 1.08999 * 109.84629 * 170.26886 * 25 16 15 48 48 H 1.09000 * 108.51960 * 179.64883 * 26 25 16 49 49 H 1.08992 * 108.52050 * 297.16948 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3985 3.5448 1.2216 7 6 3.7192 4.9335 1.3243 8 6 3.2260 5.4668 2.6446 9 8 2.6556 4.7302 3.4211 10 7 3.4179 6.7625 2.9622 11 6 2.9380 7.2810 4.2456 12 1 3.0639 6.5304 5.0258 13 6 3.6746 8.5384 4.6061 14 6 3.9263 8.6102 6.1323 15 6 2.6961 8.0770 6.8980 16 7 1.4120 8.4701 6.3941 17 6 0.8242 9.6320 6.8179 18 1 1.1043 10.0638 7.7675 19 6 -0.1318 10.2548 6.0273 20 7 -0.1999 9.9842 4.7411 21 14 -1.3265 11.4713 6.7904 22 1 -0.7471 12.8374 6.7315 23 1 -2.6075 11.4441 6.0397 24 1 -1.5746 11.0995 8.2066 25 6 0.7254 7.5901 5.3895 26 6 1.4719 7.6873 4.1356 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8332 0.9768 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 3.3491 3.4419 -0.8413 35 1 4.9080 3.0255 -0.0899 36 1 3.2405 5.4782 0.5104 37 1 4.7998 5.0624 1.2616 38 1 3.8738 7.3517 2.3410 39 1 4.6310 8.5561 4.0836 40 1 3.0831 9.4010 4.2993 41 1 4.7991 8.0074 6.3833 42 1 4.1099 9.6453 6.4199 43 1 2.7731 8.4141 7.9317 44 1 2.7425 6.9880 6.8971 45 1 -0.8677 10.4197 4.1885 46 1 0.7248 6.5583 5.7407 47 1 -0.2991 7.9302 5.2386 48 1 0.9900 7.0485 3.3954 49 1 1.4236 8.7175 3.7829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755033975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:52 Heat of formation + Delta-G solvation = -123.009295 kcal Electronic energy + Delta-G solvation = -27128.033895 eV Core-core repulsion = 23283.501313 eV Total energy + Delta-G solvation = -3844.532582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10730 -39.62006 -39.07108 -38.00499 -36.16434 -34.23286 -32.91663 -32.66015 -32.30011 -30.49728 -28.65536 -27.55146 -25.30813 -24.93520 -23.68674 -23.49082 -21.93340 -21.51135 -20.75588 -18.60106 -18.25127 -17.96608 -17.91418 -17.12889 -16.91598 -16.79036 -16.42237 -15.91555 -15.60864 -15.56924 -15.37312 -15.18887 -14.89925 -14.39794 -14.23259 -13.74655 -13.54398 -13.49101 -13.36736 -13.24005 -13.05561 -12.91232 -12.63086 -12.56835 -12.38198 -12.19622 -12.07671 -11.88121 -11.85908 -11.71432 -11.65660 -11.20431 -11.02635 -10.75825 -10.67613 -10.53695 -10.49505 -9.91599 -8.67400 -7.81428 -5.21935 1.47563 1.51290 1.59462 1.65222 1.90611 2.55322 2.77762 3.04472 3.32100 3.57526 3.79937 4.02527 4.08318 4.14009 4.15225 4.21659 4.25977 4.27970 4.34006 4.35961 4.47653 4.51495 4.53923 4.54721 4.64075 4.68467 4.75773 4.86189 4.89100 4.94775 5.01881 5.08371 5.20710 5.23779 5.24822 5.32213 5.39012 5.54013 5.63246 5.70071 5.72448 6.06030 6.10033 6.33572 6.42452 6.67733 7.16938 7.35068 7.90322 8.43513 9.23460 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.002685 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.944757 B =10424.920556 C =11320.591222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.058 3.942 5 C 0.056 3.944 6 O -0.397 6.397 7 C 0.051 3.949 8 C 0.502 3.498 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.163 3.837 12 H 0.064 0.936 13 C -0.102 4.102 14 C -0.132 4.132 15 C 0.146 3.854 16 N -0.600 5.600 17 C -0.259 4.259 18 H 0.065 0.935 19 C -0.044 4.044 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.116 4.116 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.415 0.585 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.247 0.753 46 H 0.004 0.996 47 H 0.059 0.941 48 H 0.014 0.986 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.816 -14.157 -14.122 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.336 6.336 4 C -0.018 4.018 5 C -0.020 4.020 6 O -0.316 6.316 7 C -0.028 4.028 8 C 0.289 3.711 9 O -0.457 6.457 10 N -0.360 5.360 11 C 0.058 3.942 12 H 0.083 0.917 13 C -0.140 4.140 14 C -0.173 4.173 15 C 0.018 3.982 16 N -0.322 5.322 17 C -0.389 4.389 18 H 0.083 0.917 19 C -0.239 4.239 20 N -0.563 5.563 21 Si 0.788 3.212 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.204 1.204 25 C 0.050 3.950 26 C -0.156 4.156 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.252 0.748 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.064 -14.576 -13.519 23.254 hybrid contribution -0.689 0.991 0.005 1.207 sum 11.376 -13.585 -13.514 22.284 Atomic orbital electron populations 1.21779 0.93758 1.03264 1.02216 1.22623 0.95927 0.83039 1.00905 1.87964 1.22125 1.27907 1.95590 1.22727 0.81304 0.95848 1.01964 1.22879 1.00335 0.92560 0.86244 1.88056 1.81851 1.21917 1.39773 1.22299 1.02644 0.83834 0.94014 1.21075 0.78865 0.82103 0.89043 1.90713 1.43223 1.58660 1.53069 1.45953 1.59636 1.09881 1.20513 1.20066 0.93970 0.95496 0.84665 0.91743 1.21535 0.99624 0.95661 0.97215 1.22646 0.98728 1.01182 0.94771 1.20485 0.85376 0.96442 0.95902 1.44332 1.15449 1.22267 1.50179 1.19402 1.18847 1.00606 1.00057 0.91722 1.25529 1.02900 1.00282 0.95233 1.70111 1.35871 1.46290 1.04032 0.85419 0.78847 0.79135 0.77809 1.21189 1.22242 1.20433 1.19902 0.97288 0.89347 0.88508 1.21102 0.94590 1.01834 0.98070 0.93729 0.92103 0.88870 0.91275 0.93364 0.88541 0.93066 0.91552 0.88234 0.87985 0.86351 0.74814 0.90007 0.93174 0.90375 0.92850 0.94868 0.95120 0.94372 0.97839 0.92280 0.96686 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.28 71.98 0.74 -1.92 16 2 C 0.05 0.92 6.66 71.98 0.48 1.40 16 3 O -0.42 -10.18 10.31 -144.34 -1.49 -11.67 16 4 C 0.06 1.01 6.32 71.98 0.45 1.46 16 5 C 0.06 0.94 6.32 71.98 0.45 1.40 16 6 O -0.40 -10.87 9.84 -125.55 -1.24 -12.11 16 7 C 0.05 1.11 6.42 71.24 0.46 1.56 16 8 C 0.50 16.37 7.76 87.66 0.68 17.05 16 9 O -0.58 -25.86 16.22 16.00 0.26 -25.60 16 10 N -0.71 -20.81 5.01 -447.72 -2.24 -23.05 16 11 C 0.16 6.12 2.17 43.91 0.10 6.21 16 12 H 0.06 2.73 5.83 -2.39 -0.01 2.71 16 13 C -0.10 -3.54 5.30 30.30 0.16 -3.38 16 14 C -0.13 -4.66 6.40 31.70 0.20 -4.46 16 15 C 0.15 6.22 5.13 87.43 0.45 6.67 16 16 N -0.60 -30.56 2.61 -708.84 -1.85 -32.41 16 17 C -0.26 -14.22 9.62 84.03 0.81 -13.41 16 18 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 19 C -0.04 -2.40 4.90 84.86 0.42 -1.98 16 20 N -0.92 -52.03 9.44 21.65 0.20 -51.82 16 21 Si 0.96 45.04 29.60 68.60 2.03 47.07 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C 0.17 8.96 5.25 83.58 0.44 9.40 16 26 C -0.12 -5.37 4.73 28.36 0.13 -5.24 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.41 8.67 8.45 -92.71 -0.78 7.88 16 39 H 0.08 2.17 7.81 -2.39 -0.02 2.15 16 40 H 0.05 2.08 6.83 -2.39 -0.02 2.07 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.03 1.39 7.99 -2.39 -0.02 1.37 16 44 H 0.03 1.28 6.90 -2.39 -0.02 1.27 16 45 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 46 H 0.00 0.18 8.13 -2.39 -0.02 0.16 16 47 H 0.06 3.40 6.04 -2.39 -0.01 3.38 16 48 H 0.01 0.70 7.90 -2.39 -0.02 0.68 16 49 H 0.08 4.10 5.31 -2.39 -0.01 4.09 16 Total: -1.00 -76.43 384.83 1.79 -74.64 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.14 Total: 20.19 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.97 Total: 14.75 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -3.89 Total: -107.28 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -2.46 Total: -49.37 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.43 1.79 -74.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755033975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.371 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds